ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart29d04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MEF2_DROME (P40791) Myocyte-specific enhancer factor 2 (MADS dom... 31 2.2
2TRPD_BUCAP (P42392) Anthranilate phosphoribosyltransferase (EC 2... 31 2.2
3YCF2_MARPO (P09975) Protein ycf2 29 6.3
4UBP16_HUMAN (Q9Y5T5) Ubiquitin carboxyl-terminal hydrolase 16 (E... 29 8.2

>MEF2_DROME (P40791) Myocyte-specific enhancer factor 2 (MADS domain|
           transcription factor D-mef2)
          Length = 539

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +2

Query: 5   NQRHLF*NEKNIIDKKTKSGRFSPNYRSIYTHNSKTKAIHSRHRKYDRVF 154
           N+ H     KNII+K+ K+G  SP+     T  + T    +++ K D  F
Sbjct: 73  NEPHESLTNKNIIEKENKNGVMSPDSPEAETDYTLTPRTEAKYNKIDEEF 122



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>TRPD_BUCAP (P42392) Anthranilate phosphoribosyltransferase (EC 2.4.2.18)|
          Length = 335

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 26  NEKNIIDKKTKSGRFSPNYRSIYTHNSKTKAI 121
           N K I+DK      F+P Y S++ + SKT++I
Sbjct: 136 NSKKILDKLNICFLFAPKYHSVFKYASKTRSI 167



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>YCF2_MARPO (P09975) Protein ycf2|
          Length = 2136

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = +2

Query: 26  NEKNIIDKKTKSGRFSPNYRSIYTHNSKTKAIHSRHRKY 142
           NEK +  K+ K+ +F+PN + +  +NS  K I+ +++ +
Sbjct: 664 NEKELNKKRKKNFQFNPNIKILSFYNSSKKNIYLQNKYF 702



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>UBP16_HUMAN (Q9Y5T5) Ubiquitin carboxyl-terminal hydrolase 16 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 16)
           (Ubiquitin-specific-processing protease 16)
           (Deubiquitinating enzyme 16) (Ubiquitin-processing
           protease UBP-M)
          Length = 823

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -3

Query: 433 KKTRSQQDPEMARHLLDGGAADKDQRVSATVL 338
           K  + Q   E+ R+LLDG  A++ QRVS  +L
Sbjct: 293 KGYQQQDSQELLRYLLDGMRAEEHQRVSKGIL 324


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,296,742
Number of Sequences: 219361
Number of extensions: 1171291
Number of successful extensions: 3107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3103
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3638905326
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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