ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart29d03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK070663.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056F20, full insert sequence Length = 1533 Score = 379 bits (191), Expect = e-102 Identities = 353/407 (86%) Strand = Plus / Minus Query: 130 ctagatgtttgctaccccgactacgtacgcgttccaagcatctgcctggttgaaacgctg 189 |||||| |||||||| || || || || || |||||||||||||| || |||||| |||| Sbjct: 1229 ctagatatttgctactccaacaacatatgcattccaagcatctgcttgattgaaatgctg 1170 Query: 190 gagctcttcgtacttcacgtcgcggtccgcggtgtactccttggcgtttccgcttgattt 249 | ||||| || ||||| || |||| || | || || || || ||||| ||||||| Sbjct: 1169 taattcttcatatttcacatcacggttggcattatattctttagcatttccacttgattg 1110 Query: 250 ggtgtctggcatctccctgacccagacgtggatggacttgaatccagcttcctccaggca 309 ||| | |||||||||||||| |||||| ||||| || || |||||||||||||||| ||| Sbjct: 1109 ggtatttggcatctccctgatccagacatggattgatttaaatccagcttcctccaagca 1050 Query: 310 atccttgatttctggtatcgaccacaggcgccaatggtacgtgaaagcatgccgtatcat 369 || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 1049 gtctttgatttctggtatcgaccacaggcgccaatggtacgtgaaagcatgccgtaacat 990 Query: 370 ttgcttctttccaacttgaaagtggaggctgatccttgtttcgcgagtgatgatatcaaa 429 ||||||||||||| |||| |||||||| ||||||||||||| | || | |||||||| || Sbjct: 989 ttgcttctttccagcttggaagtggagactgatccttgtttggtgacttatgatatcgaa 930 Query: 430 ctcttcttgctcccagaaataagtaaagctggggaatctcctctggagacgaagcttgca 489 |||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||||| Sbjct: 929 ctcttcttgctcccagaaataagtgaagctggggaacctcctctgcagacgtagcttgcg 870 Query: 490 ttcagatgatgtgccgccatatacatccattacaaatataccacctc 536 ||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 869 ttcagatgatgtgccaccatacacatccattacaaatataccacctc 823
>dbj|AK119765.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-172-A01, full insert sequence Length = 2131 Score = 363 bits (183), Expect = 4e-97 Identities = 352/407 (86%), Gaps = 1/407 (0%) Strand = Plus / Minus Query: 130 ctagatgtttgctaccccgactacgtacgcgttccaagcatctgcctggttgaaacgctg 189 |||||| |||||||| || || || || || |||||||||||||| || |||||| |||| Sbjct: 1234 ctagatatttgctactccaacaacatatgcattccaagcatctgcttgattgaaatgctg 1175 Query: 190 gagctcttcgtacttcacgtcgcggtccgcggtgtactccttggcgtttccgcttgattt 249 | ||||| || ||||| || |||| || | || || || || ||||| ||||||| Sbjct: 1174 taattcttcatatttcacatcacggttggcattatattctttagcatttccacttgattg 1115 Query: 250 ggtgtctggcatctccctgacccagacgtggatggacttgaatccagcttcctccaggca 309 ||| | |||||||||||||| |||||| ||||| || || |||||||||||||||| ||| Sbjct: 1114 ggtatttggcatctccctgatccagacatggattgatttaaatccagcttcctccaagca 1055 Query: 310 atccttgatttctggtatcgaccacaggcgccaatggtacgtgaaagcatgccgtatcat 369 || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 1054 gtctttgatttctggtatcgaccacaggcgccaatggtacgtgaaagcatgccgtaacat 995 Query: 370 ttgcttctttccaacttgaaagtggaggctgatccttgtttcgcgagtgatgatatcaaa 429 ||||||||||||| |||| |||||||| ||||||||||||| | || | |||||||| || Sbjct: 994 ttgcttctttccagcttggaagtggagactgatccttgtttggtgacttatgatatcgaa 935 Query: 430 ctcttcttgctcccagaaataagtaaagctggggaatctcctctggagacgaagcttgca 489 |||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||||| Sbjct: 934 ctcttcttgctcccagaaataagtgaagctggggaacctcctctgcagacgtagcttgcg 875 Query: 490 ttcagatgatgtgccgccatatacatccattacaaatataccacctc 536 ||||||||||||||| ||||| ||||||||||||||| ||||||||| Sbjct: 874 ttcagatgatgtgccaccatacacatccattacaaat-taccacctc 829
>ref|NM_190683.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1320 Score = 264 bits (133), Expect = 3e-67 Identities = 274/321 (85%) Strand = Plus / Minus Query: 130 ctagatgtttgctaccccgactacgtacgcgttccaagcatctgcctggttgaaacgctg 189 |||||| |||||||| || || || || || |||||||||||||| || |||||| |||| Sbjct: 1320 ctagatatttgctactccaacaacatatgcattccaagcatctgcttgattgaaatgctg 1261 Query: 190 gagctcttcgtacttcacgtcgcggtccgcggtgtactccttggcgtttccgcttgattt 249 | ||||| || ||||| || |||| || | || || || || ||||| ||||||| Sbjct: 1260 taattcttcatatttcacatcacggttggcattatattctttagcatttccacttgattg 1201 Query: 250 ggtgtctggcatctccctgacccagacgtggatggacttgaatccagcttcctccaggca 309 ||| | |||||||||||||| |||||| ||||| || || |||||||||||||||| ||| Sbjct: 1200 ggtatttggcatctccctgatccagacatggattgatttaaatccagcttcctccaagca 1141 Query: 310 atccttgatttctggtatcgaccacaggcgccaatggtacgtgaaagcatgccgtatcat 369 || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 1140 gtctttgatttctggtatcgaccacaggcgccaatggtacgtgaaagcatgccgtaacat 1081 Query: 370 ttgcttctttccaacttgaaagtggaggctgatccttgtttcgcgagtgatgatatcaaa 429 ||||||||||||| |||| |||||||| ||||||||||||| | || | |||||||| || Sbjct: 1080 ttgcttctttccagcttggaagtggagactgatccttgtttggtgacttatgatatcgaa 1021 Query: 430 ctcttcttgctcccagaaata 450 ||||||||||||||||||||| Sbjct: 1020 ctcttcttgctcccagaaata 1000 Score = 115 bits (58), Expect = 2e-22 Identities = 76/82 (92%) Strand = Plus / Minus Query: 455 aagctggggaatctcctctggagacgaagcttgcattcagatgatgtgccgccatataca 514 ||||||||||| |||||||| ||||| ||||||| ||||||||||||||| ||||| ||| Sbjct: 977 aagctggggaacctcctctgcagacgtagcttgcgttcagatgatgtgccaccatacaca 918 Query: 515 tccattacaaatataccacctc 536 |||||||||||||||||||||| Sbjct: 917 tccattacaaatataccacctc 896
>gb|AY108943.1| Zea mays PCO088651 mRNA sequence Length = 1033 Score = 174 bits (88), Expect = 2e-40 Identities = 124/136 (91%) Strand = Plus / Minus Query: 403 ccttgtttcgcgagtgatgatatcaaactcttcttgctcccagaaataagtaaagctggg 462 |||||||| |||| |||||||||||||||| ||||||||||||||||| || |||||||| Sbjct: 1033 ccttgtttggcgactgatgatatcaaactcatcttgctcccagaaatacgtgaagctggg 974 Query: 463 gaatctcctctggagacgaagcttgcattcagatgatgtgccgccatatacatccattac 522 |||| ||| ||||||||| | ||||| |||||||||| |||| ||||||||||||||||| Sbjct: 973 gaatttccgctggagacgtaacttgcgttcagatgatatgccaccatatacatccattac 914 Query: 523 aaatataccacctctt 538 |||||||||||||||| Sbjct: 913 aaatataccacctctt 898
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 163 bits (82), Expect = 7e-37 Identities = 109/118 (92%) Strand = Plus / Minus Query: 333 acaggcgccaatggtacgtgaaagcatgccgtatcatttgcttctttccaacttgaaagt 392 ||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||| Sbjct: 37118328 acaggcgccaatggtacgtgaaagcatgccgtaacatttgcttctttccagcttggaagt 37118269 Query: 393 ggaggctgatccttgtttcgcgagtgatgatatcaaactcttcttgctcccagaaata 450 |||| ||||||||||||| | || | |||||||| ||||||||||||||||||||||| Sbjct: 37118268 ggagactgatccttgtttggtgacttatgatatcgaactcttcttgctcccagaaata 37118211 Score = 115 bits (58), Expect = 2e-22 Identities = 76/82 (92%) Strand = Plus / Minus Query: 455 aagctggggaatctcctctggagacgaagcttgcattcagatgatgtgccgccatataca 514 ||||||||||| |||||||| ||||| ||||||| ||||||||||||||| ||||| ||| Sbjct: 37117645 aagctggggaacctcctctgcagacgtagcttgcgttcagatgatgtgccaccatacaca 37117586 Query: 515 tccattacaaatataccacctc 536 |||||||||||||||||||||| Sbjct: 37117585 tccattacaaatataccacctc 37117564 Score = 105 bits (53), Expect = 1e-19 Identities = 167/205 (81%) Strand = Plus / Minus Query: 130 ctagatgtttgctaccccgactacgtacgcgttccaagcatctgcctggttgaaacgctg 189 |||||| |||||||| || || || || || |||||||||||||| || |||||| |||| Sbjct: 37119211 ctagatatttgctactccaacaacatatgcattccaagcatctgcttgattgaaatgctg 37119152 Query: 190 gagctcttcgtacttcacgtcgcggtccgcggtgtactccttggcgtttccgcttgattt 249 | ||||| || ||||| || |||| || | || || || || ||||| ||||||| Sbjct: 37119151 taattcttcatatttcacatcacggttggcattatattctttagcatttccacttgattg 37119092 Query: 250 ggtgtctggcatctccctgacccagacgtggatggacttgaatccagcttcctccaggca 309 ||| | |||||||||||||| |||||| ||||| || || |||||||||||||||| ||| Sbjct: 37119091 ggtatttggcatctccctgatccagacatggattgatttaaatccagcttcctccaagca 37119032 Query: 310 atccttgatttctggtatcgaccac 334 || ||||||||||||||||||||| Sbjct: 37119031 gtctttgatttctggtatcgaccac 37119007
>dbj|AP003289.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0683F02 Length = 153388 Score = 163 bits (82), Expect = 7e-37 Identities = 109/118 (92%) Strand = Plus / Minus Query: 333 acaggcgccaatggtacgtgaaagcatgccgtatcatttgcttctttccaacttgaaagt 392 ||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||| Sbjct: 119469 acaggcgccaatggtacgtgaaagcatgccgtaacatttgcttctttccagcttggaagt 119410 Query: 393 ggaggctgatccttgtttcgcgagtgatgatatcaaactcttcttgctcccagaaata 450 |||| ||||||||||||| | || | |||||||| ||||||||||||||||||||||| Sbjct: 119409 ggagactgatccttgtttggtgacttatgatatcgaactcttcttgctcccagaaata 119352 Score = 115 bits (58), Expect = 2e-22 Identities = 76/82 (92%) Strand = Plus / Minus Query: 455 aagctggggaatctcctctggagacgaagcttgcattcagatgatgtgccgccatataca 514 ||||||||||| |||||||| ||||| ||||||| ||||||||||||||| ||||| ||| Sbjct: 118786 aagctggggaacctcctctgcagacgtagcttgcgttcagatgatgtgccaccatacaca 118727 Query: 515 tccattacaaatataccacctc 536 |||||||||||||||||||||| Sbjct: 118726 tccattacaaatataccacctc 118705 Score = 105 bits (53), Expect = 1e-19 Identities = 167/205 (81%) Strand = Plus / Minus Query: 130 ctagatgtttgctaccccgactacgtacgcgttccaagcatctgcctggttgaaacgctg 189 |||||| |||||||| || || || || || |||||||||||||| || |||||| |||| Sbjct: 120352 ctagatatttgctactccaacaacatatgcattccaagcatctgcttgattgaaatgctg 120293 Query: 190 gagctcttcgtacttcacgtcgcggtccgcggtgtactccttggcgtttccgcttgattt 249 | ||||| || ||||| || |||| || | || || || || ||||| ||||||| Sbjct: 120292 taattcttcatatttcacatcacggttggcattatattctttagcatttccacttgattg 120233 Query: 250 ggtgtctggcatctccctgacccagacgtggatggacttgaatccagcttcctccaggca 309 ||| | |||||||||||||| |||||| ||||| || || |||||||||||||||| ||| Sbjct: 120232 ggtatttggcatctccctgatccagacatggattgatttaaatccagcttcctccaagca 120173 Query: 310 atccttgatttctggtatcgaccac 334 || ||||||||||||||||||||| Sbjct: 120172 gtctttgatttctggtatcgaccac 120148
>gb|AF175982.1|AF175982 Rana sylvatica translation elongation factor 1 gamma subunit mRNA, partial cds Length = 1586 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 288 tgaatccagcttcctccaggca 309 |||||||||||||||||||||| Sbjct: 1077 tgaatccagcttcctccaggca 1056
>gb|AC169190.3| Erinaceus europaeus, clone XX-29935257F24, complete sequence Length = 38698 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 281 atggacttgaatccagcttcct 302 |||||||||||||||||||||| Sbjct: 28852 atggacttgaatccagcttcct 28831
>ref|XM_630283.1| Dictyostelium discoideum hypothetical protein (DDB0219655), partial mRNA Length = 972 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 ctttccaacttgaaagtgga 395 |||||||||||||||||||| Sbjct: 56 ctttccaacttgaaagtgga 75
>gb|AC150788.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0073C10, complete sequence Length = 165350 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 444 agaaataagtaaagctggggaatc 467 ||||||| |||||||||||||||| Sbjct: 96587 agaaatatgtaaagctggggaatc 96610
>gb|AC146500.2| Danio rerio clone CH211-130P22, complete sequence Length = 165269 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 caaaacggatgcttttatta 59 |||||||||||||||||||| Sbjct: 35548 caaaacggatgcttttatta 35567
>emb|CR392003.9| Zebrafish DNA sequence from clone DKEY-242N9 in linkage group 3, complete sequence Length = 182043 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 caaaacggatgcttttatta 59 |||||||||||||||||||| Sbjct: 152029 caaaacggatgcttttatta 152010
>gb|AC113941.16| Mus musculus chromosome 8, clone RP23-161H3, complete sequence Length = 194913 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 ttattacagaaagtagttca 73 |||||||||||||||||||| Sbjct: 67282 ttattacagaaagtagttca 67301
>emb|AL590868.10| Human DNA sequence from clone RP11-105L5 on chromosome 6 Contains part of the gene for phenylalanine-tRNA synthetase (FARS1), complete sequence Length = 71257 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 acagaaagtagttcagaact 78 |||||||||||||||||||| Sbjct: 19996 acagaaagtagttcagaact 19977
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 ggcgtttccgcttgatttgg 251 |||||||||||||||||||| Sbjct: 1085831 ggcgtttccgcttgatttgg 1085812
>emb|AL645591.17| Mouse DNA sequence from clone RP23-298I13 on chromosome 11, complete sequence Length = 148183 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 ttcttgctcccagaaataag 452 |||||||||||||||||||| Sbjct: 124799 ttcttgctcccagaaataag 124818
>emb|BX649211.10| Zebrafish DNA sequence from clone DKEY-215O18 in linkage group 3, complete sequence Length = 125992 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 caaaacggatgcttttatta 59 |||||||||||||||||||| Sbjct: 39959 caaaacggatgcttttatta 39940
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 444 agaaataagtaaagctggggaatc 467 ||||||| |||||||||||||||| Sbjct: 3898700 agaaatatgtaaagctggggaatc 3898723
>gb|AC006450.13|AC006450 Homo sapiens chromosome 9, clone RP11-85O21, complete sequence Length = 177555 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 aagcatctgcctggttgaaa 184 |||||||||||||||||||| Sbjct: 72511 aagcatctgcctggttgaaa 72530
>emb|BX511007.16| Zebrafish DNA sequence from clone CH211-89P3 in linkage group 20, complete sequence Length = 174463 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 tgcattcagatgatgtgccg 505 |||||||||||||||||||| Sbjct: 172009 tgcattcagatgatgtgccg 172028
>gb|AC102618.19| Mus musculus chromosome 18, clone RP23-426G16, complete sequence Length = 242449 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 ttcttgctcccagaaataag 452 |||||||||||||||||||| Sbjct: 146827 ttcttgctcccagaaataag 146846
>gb|AC163692.4| Mus musculus BAC clone RP24-68H1 from chromosome 14, complete sequence Length = 224333 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 ttcttgctcccagaaataag 452 |||||||||||||||||||| Sbjct: 51132 ttcttgctcccagaaataag 51151 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,290,188 Number of Sequences: 3902068 Number of extensions: 4290188 Number of successful extensions: 75490 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75410 Number of HSP's gapped (non-prelim): 80 length of query: 538 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 515 effective length of database: 17,143,297,704 effective search space: 8828798317560 effective search space used: 8828798317560 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
