Clone Name | rbart29c09 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_469561.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3138 Score = 87.7 bits (44), Expect = 3e-14 Identities = 116/140 (82%) Strand = Plus / Minus Query: 11 cccatatagattgttatttgacagatcgaccatcttcaggtctggcaactcagcaagctc 70 |||||| ||||||||||| |||||||| ||| | |||| | ||||| |||||| ||| Sbjct: 1386 cccataaagattgttattcgacagatcaacctccgtcagagcaggcaaagcagcaacctc 1327 Query: 71 cttcggcaccgtaccagtaatgttgttgtttgaaagaattagcgtcacaagtgtggcaat 130 |||||||||||| |||||||| ||||||| || |||||| ||| || |||||| | ||| Sbjct: 1326 cttcggcaccgtgccagtaatattgttgtctgcaagaataagcttctgaagtgttgtaat 1267 Query: 131 cttcccgatagatggtgaga 150 ||||||||||| ||| |||| Sbjct: 1266 cttcccgatagctggggaga 1247 Score = 85.7 bits (43), Expect = 1e-13 Identities = 61/67 (91%) Strand = Plus / Minus Query: 256 ctgcgagctttgccgggtacatgaacccagccgctacctccagcagcaggtctacacggg 315 |||||||||| ||||||||| |||| ||||||| |||||||||||||||| |||||||| Sbjct: 1141 ctgcgagcttcgccgggtactggaactcagccgccacctccagcagcaggtttacacggg 1082 Query: 316 gatcaca 322 ||||||| Sbjct: 1081 gatcaca 1075
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 87.7 bits (44), Expect = 3e-14 Identities = 116/140 (82%) Strand = Plus / Plus Query: 11 cccatatagattgttatttgacagatcgaccatcttcaggtctggcaactcagcaagctc 70 |||||| ||||||||||| |||||||| ||| | |||| | ||||| |||||| ||| Sbjct: 28723722 cccataaagattgttattcgacagatcaacctccgtcagagcaggcaaagcagcaacctc 28723781 Query: 71 cttcggcaccgtaccagtaatgttgttgtttgaaagaattagcgtcacaagtgtggcaat 130 |||||||||||| |||||||| ||||||| || |||||| ||| || |||||| | ||| Sbjct: 28723782 cttcggcaccgtgccagtaatattgttgtctgcaagaataagcttctgaagtgttgtaat 28723841 Query: 131 cttcccgatagatggtgaga 150 ||||||||||| ||| |||| Sbjct: 28723842 cttcccgatagctggggaga 28723861 Score = 85.7 bits (43), Expect = 1e-13 Identities = 61/67 (91%) Strand = Plus / Plus Query: 256 ctgcgagctttgccgggtacatgaacccagccgctacctccagcagcaggtctacacggg 315 |||||||||| ||||||||| |||| ||||||| |||||||||||||||| |||||||| Sbjct: 28723967 ctgcgagcttcgccgggtactggaactcagccgccacctccagcagcaggtttacacggg 28724026 Query: 316 gatcaca 322 ||||||| Sbjct: 28724027 gatcaca 28724033
>emb|Y07748.1|OSTMK O.sativa mRNA for leucine rich repeat receptor-like kinase Length = 3123 Score = 87.7 bits (44), Expect = 3e-14 Identities = 116/140 (82%) Strand = Plus / Minus Query: 11 cccatatagattgttatttgacagatcgaccatcttcaggtctggcaactcagcaagctc 70 |||||| ||||||||||| |||||||| ||| | |||| | ||||| |||||| ||| Sbjct: 1381 cccataaagattgttattcgacagatcaacctccgtcagagcaggcaaagcagcaacctc 1322 Query: 71 cttcggcaccgtaccagtaatgttgttgtttgaaagaattagcgtcacaagtgtggcaat 130 |||||||||||| |||||||| ||||||| || |||||| ||| || |||||| | ||| Sbjct: 1321 cttcggcaccgtgccagtaatattgttgtctgcaagaataagcttctgaagtgttgtaat 1262 Query: 131 cttcccgatagatggtgaga 150 ||||||||||| ||| |||| Sbjct: 1261 cttcccgatagctggggaga 1242 Score = 85.7 bits (43), Expect = 1e-13 Identities = 61/67 (91%) Strand = Plus / Minus Query: 256 ctgcgagctttgccgggtacatgaacccagccgctacctccagcagcaggtctacacggg 315 |||||||||| ||||||||| |||||||||||| ||||||||||||||| |||||||| Sbjct: 1136 ctgcgagcttcgccgggtactggaacccagccgccacctccagcagcaggcttacacggg 1077 Query: 316 gatcaca 322 ||||||| Sbjct: 1076 gatcaca 1070
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 87.7 bits (44), Expect = 3e-14 Identities = 116/140 (82%) Strand = Plus / Plus Query: 11 cccatatagattgttatttgacagatcgaccatcttcaggtctggcaactcagcaagctc 70 |||||| ||||||||||| |||||||| ||| | |||| | ||||| |||||| ||| Sbjct: 28815046 cccataaagattgttattcgacagatcaacctccgtcagagcaggcaaagcagcaacctc 28815105 Query: 71 cttcggcaccgtaccagtaatgttgttgtttgaaagaattagcgtcacaagtgtggcaat 130 |||||||||||| |||||||| ||||||| || |||||| ||| || |||||| | ||| Sbjct: 28815106 cttcggcaccgtgccagtaatattgttgtctgcaagaataagcttctgaagtgttgtaat 28815165 Query: 131 cttcccgatagatggtgaga 150 ||||||||||| ||| |||| Sbjct: 28815166 cttcccgatagctggggaga 28815185 Score = 85.7 bits (43), Expect = 1e-13 Identities = 61/67 (91%) Strand = Plus / Plus Query: 256 ctgcgagctttgccgggtacatgaacccagccgctacctccagcagcaggtctacacggg 315 |||||||||| ||||||||| |||| ||||||| |||||||||||||||| |||||||| Sbjct: 28815291 ctgcgagcttcgccgggtactggaactcagccgccacctccagcagcaggtttacacggg 28815350 Query: 316 gatcaca 322 ||||||| Sbjct: 28815351 gatcaca 28815357
>gb|AC091532.13| Oryza sativa chromosome 3 BAC OSJNBa0078A17 genomic sequence, complete sequence Length = 147344 Score = 87.7 bits (44), Expect = 3e-14 Identities = 116/140 (82%) Strand = Plus / Plus Query: 11 cccatatagattgttatttgacagatcgaccatcttcaggtctggcaactcagcaagctc 70 |||||| ||||||||||| |||||||| ||| | |||| | ||||| |||||| ||| Sbjct: 30703 cccataaagattgttattcgacagatcaacctccgtcagagcaggcaaagcagcaacctc 30762 Query: 71 cttcggcaccgtaccagtaatgttgttgtttgaaagaattagcgtcacaagtgtggcaat 130 |||||||||||| |||||||| ||||||| || |||||| ||| || |||||| | ||| Sbjct: 30763 cttcggcaccgtgccagtaatattgttgtctgcaagaataagcttctgaagtgttgtaat 30822 Query: 131 cttcccgatagatggtgaga 150 ||||||||||| ||| |||| Sbjct: 30823 cttcccgatagctggggaga 30842 Score = 85.7 bits (43), Expect = 1e-13 Identities = 61/67 (91%) Strand = Plus / Plus Query: 256 ctgcgagctttgccgggtacatgaacccagccgctacctccagcagcaggtctacacggg 315 |||||||||| ||||||||| |||| ||||||| |||||||||||||||| |||||||| Sbjct: 30948 ctgcgagcttcgccgggtactggaactcagccgccacctccagcagcaggtttacacggg 31007 Query: 316 gatcaca 322 ||||||| Sbjct: 31008 gatcaca 31014
>dbj|AK066295.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013060B13, full insert sequence Length = 2957 Score = 87.7 bits (44), Expect = 3e-14 Identities = 116/140 (82%) Strand = Plus / Minus Query: 11 cccatatagattgttatttgacagatcgaccatcttcaggtctggcaactcagcaagctc 70 |||||| ||||||||||| |||||||| ||| | |||| | ||||| |||||| ||| Sbjct: 977 cccataaagattgttattcgacagatcaacctccgtcagagcaggcaaagcagcaacctc 918 Query: 71 cttcggcaccgtaccagtaatgttgttgtttgaaagaattagcgtcacaagtgtggcaat 130 |||||||||||| |||||||| ||||||| || |||||| ||| || |||||| | ||| Sbjct: 917 cttcggcaccgtgccagtaatattgttgtctgcaagaataagcttctgaagtgttgtaat 858 Query: 131 cttcccgatagatggtgaga 150 ||||||||||| ||| |||| Sbjct: 857 cttcccgatagctggggaga 838 Score = 85.7 bits (43), Expect = 1e-13 Identities = 61/67 (91%) Strand = Plus / Minus Query: 256 ctgcgagctttgccgggtacatgaacccagccgctacctccagcagcaggtctacacggg 315 |||||||||| ||||||||| |||| ||||||| |||||||||||||||| |||||||| Sbjct: 732 ctgcgagcttcgccgggtactggaactcagccgccacctccagcagcaggtttacacggg 673 Query: 316 gatcaca 322 ||||||| Sbjct: 672 gatcaca 666
>dbj|AK062249.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-F10, full insert sequence Length = 1857 Score = 69.9 bits (35), Expect = 7e-09 Identities = 83/99 (83%) Strand = Plus / Minus Query: 11 cccatatagattgttatttgacagatcgaccatcttcaggtctggcaactcagcaagctc 70 |||||| ||||||||||| |||||||| ||| | |||| | ||||| |||||| ||| Sbjct: 105 cccataaagattgttattcgacagatcaacctccgtcagagcaggcaaagcagcaacctc 46 Query: 71 cttcggcaccgtaccagtaatgttgttgtttgaaagaat 109 |||||||||||| |||||||| ||||||| || |||||| Sbjct: 45 cttcggcaccgtgccagtaatattgttgtctgcaagaat 7
>gb|AF497474.1| Aegilops tauschii leucine-rich-like protein gene, partial cds; seed globulin (Glo-2) gene, complete cds; HMW-glutenin (Glu-Dty) gene, Glu-Dty-T2 allele, complete cds; and HMW-glutenin (HMW) gene, HMW-Dtx2 allele, complete cds Length = 102842 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 93 ttgttgtttgaaagaattagc 113 ||||||||||||||||||||| Sbjct: 572 ttgttgtttgaaagaattagc 592
>emb|AL137244.28| Human DNA sequence from clone RP11-173B14 on chromosome 13 Contains 2 novel genes, the UCHL3 gene for ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase), the 5' end of the LMO7 gene for LIM domain only 7 (KIAA0858) and 2 CpG islands, complete sequence Length = 183358 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 169 atttgggaaaattcagcaatg 189 ||||||||||||||||||||| Sbjct: 124556 atttgggaaaattcagcaatg 124576
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 93 ttgttgtttgaaagaattagc 113 ||||||||||||||||||||| Sbjct: 23161555 ttgttgtttgaaagaattagc 23161575 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 93 ttgttgtttgaaagaattagc 113 ||||||||||||||||||||| Sbjct: 22219643 ttgttgtttgaaagaattagc 22219663 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 93 ttgttgtttgaaagaattagc 113 ||||||||||||||||||||| Sbjct: 21930241 ttgttgtttgaaagaattagc 21930261 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 93 ttgttgtttgaaagaattagc 113 ||||||||||||||||||||| Sbjct: 21821462 ttgttgtttgaaagaattagc 21821482 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 93 ttgttgtttgaaagaattagc 113 ||||||||||||||||||||| Sbjct: 13699259 ttgttgtttgaaagaattagc 13699239
>emb|AL713910.2|CNS07YQB Oryza sativa chromosome 12, . BAC OSJNBa0042B03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 145118 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 93 ttgttgtttgaaagaattagc 113 ||||||||||||||||||||| Sbjct: 32860 ttgttgtttgaaagaattagc 32840
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 93 ttgttgtttgaaagaattagc 113 ||||||||||||||||||||| Sbjct: 23089746 ttgttgtttgaaagaattagc 23089766 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 93 ttgttgtttgaaagaattagc 113 ||||||||||||||||||||| Sbjct: 22147988 ttgttgtttgaaagaattagc 22148008 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 93 ttgttgtttgaaagaattagc 113 ||||||||||||||||||||| Sbjct: 21858586 ttgttgtttgaaagaattagc 21858606 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 93 ttgttgtttgaaagaattagc 113 ||||||||||||||||||||| Sbjct: 21749807 ttgttgtttgaaagaattagc 21749827 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 93 ttgttgtttgaaagaattagc 113 ||||||||||||||||||||| Sbjct: 13653533 ttgttgtttgaaagaattagc 13653513
>emb|AL731742.3|CNS08C7R Oryza sativa chromosome 12, . BAC OJ1123_B09 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155585 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 93 ttgttgtttgaaagaattagc 113 ||||||||||||||||||||| Sbjct: 33367 ttgttgtttgaaagaattagc 33347
>emb|AL831807.7|CNS08CAK Oryza sativa chromosome 12, . BAC OSJNBa0062E22 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 138308 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 93 ttgttgtttgaaagaattagc 113 ||||||||||||||||||||| Sbjct: 36369 ttgttgtttgaaagaattagc 36389
>emb|AL732647.4|CNS08C9M Oryza sativa chromosome 12, . BAC OSJNBb0087J18 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 121592 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 93 ttgttgtttgaaagaattagc 113 ||||||||||||||||||||| Sbjct: 101870 ttgttgtttgaaagaattagc 101850
>emb|AL928753.3|CNS08CBQ Oryza sativa chromosome 12, . BAC OSJNBb0076G11 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 135323 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 93 ttgttgtttgaaagaattagc 113 ||||||||||||||||||||| Sbjct: 16842 ttgttgtttgaaagaattagc 16822
>emb|BX664709.2|CNS09SBZ Oryza sativa chromosome 12, . BAC B1270G11 of chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155451 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 93 ttgttgtttgaaagaattagc 113 ||||||||||||||||||||| Sbjct: 14912 ttgttgtttgaaagaattagc 14892
>gb|DP000016.1| Pan troglodytes target 1 genomic scaffold Length = 1623484 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 tttcctccccaagcagctgc 259 |||||||||||||||||||| Sbjct: 979428 tttcctccccaagcagctgc 979447
>gb|BC079755.1| Xenopus laevis cDNA clone IMAGE:6951677, partial cds Length = 2496 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 tttgggaaaattcagcaatg 189 |||||||||||||||||||| Sbjct: 2378 tttgggaaaattcagcaatg 2359
>gb|AC002542.1| Homo sapiens BAC clone CTB-114A6 from 7, complete sequence Length = 188741 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 tttcctccccaagcagctgc 259 |||||||||||||||||||| Sbjct: 80594 tttcctccccaagcagctgc 80613
>emb|AL592429.6| Human DNA sequence from clone RP11-12A2 on chromosome 6 Contains a DnaJ (Hsp40) homolog subfamily C member 7 (DNAJC7) pseudogene, the CITED2 gene for Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 2 (MRG1, P35SRJ) and a putative novel gene. Contains two CpG islands, complete sequence Length = 167460 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 ttgatttttacccgacttgt 366 |||||||||||||||||||| Sbjct: 71193 ttgatttttacccgacttgt 71212
>gb|AC114699.5| Rattus norvegicus 19 BAC CH230-235A3 (Children's Hospital Oakland Research Institute) complete sequence Length = 224930 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 tcacattcttcagagacttg 446 |||||||||||||||||||| Sbjct: 48492 tcacattcttcagagacttg 48473
>gb|AC144752.3| Pan troglodytes clone CH251-65N5, complete sequence Length = 113988 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 tttcctccccaagcagctgc 259 |||||||||||||||||||| Sbjct: 79681 tttcctccccaagcagctgc 79700
>emb|BX569692.1| Synechococcus sp. WH8102 complete genome; segment 4/7 Length = 345997 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 cagccgctacctccagcagc 302 |||||||||||||||||||| Sbjct: 207538 cagccgctacctccagcagc 207519
>gb|AC146706.8| Medicago truncatula clone mth2-108g5, complete sequence Length = 106753 Score = 40.1 bits (20), Expect = 6.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 2 aggaatctccccatatagattgttatttgaca 33 ||||||||| ||| ||||||||||||| |||| Sbjct: 51067 aggaatctctccagatagattgttattagaca 51036
>gb|DP000025.1| Gorilla gorilla gorilla target 1 genomic scaffold Length = 1787293 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 tttcctccccaagcagctgc 259 |||||||||||||||||||| Sbjct: 898837 tttcctccccaagcagctgc 898856
>gb|AC010128.3|AC010128 Homo sapiens BAC clone RP11-15H4 from Y, complete sequence Length = 62786 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 12 ccatatagattgttatttgacaga 35 |||||||||||| ||||||||||| Sbjct: 3586 ccatatagattgatatttgacaga 3563 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,659,524 Number of Sequences: 3902068 Number of extensions: 3659524 Number of successful extensions: 86937 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86767 Number of HSP's gapped (non-prelim): 163 length of query: 446 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 424 effective length of database: 17,147,199,772 effective search space: 7270412703328 effective search space used: 7270412703328 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)