>HSBH1_SOYBN (P46608) Homeobox protein SBH1|
          Length = 379

 Score = 37.4 bits (85), Expect = 0.025
 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
 Frame = +3

Query: 72  SIQHESNHNHNTTQNHDELA*Y**HNHTSLGWILTYCTQTFYSSELTDRHHIHHSENHMD 251
           SI   +NHN+N T + D       +N+T LG         +Y  E +D HH HH  N+ +
Sbjct: 70  SIMLHNNHNNNKTDDDDN------NNNTGLG---------YYFME-SDHHHHHHGNNNNN 113

Query: 252 GNCSCRSQET------AHP 290
           G+ S  S         AHP
Sbjct: 114 GSSSSSSSSAVKAKIMAHP 132

>SECA_PEA (Q41062) Preprotein translocase secA subunit, chloroplast precursor|
          Length = 1011

 Score = 33.1 bits (74), Expect = 0.47
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = -3

Query: 494 VGFADVTAAKSLEEKLKASGVAHEVHIYPGCSHAFMNASPEALERRKGMGLTDENQGAID 315
           VG   V  + SL ++LK +G+ HEV          +NA PE +ER   +       GA+ 
Sbjct: 497 VGTTSVEQSDSLSQQLKEAGILHEV----------LNAKPENVEREAEIVAQSGRLGAVT 546

Query: 314 LA 309
           +A
Sbjct: 547 IA 548

>KNOB_PLAFG (P09346) Knob-associated histidine-rich protein precursor (KAHRP)|
           (KP)
          Length = 634

 Score = 32.7 bits (73), Expect = 0.62
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = +3

Query: 78  QHESNHNHNTTQNHDELA*Y**HNHTSLGWILTYCTQTFYSSELTDRHHIHHSENH 245
           QHE +H+H+    H   A +  H+H   G +     Q        D+ H HH  +H
Sbjct: 60  QHEHHHHHHHQHQHQHQAPHQAHHHHHHGEVNHQAPQVHQQVHGQDQAHHHHHHHH 115

>KNOB_PLAFA (P13817) Knob-associated histidine-rich protein precursor (KAHRP)|
           (HRPI) (Fragment)
          Length = 473

 Score = 32.7 bits (73), Expect = 0.62
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = +3

Query: 78  QHESNHNHNTTQNHDELA*Y**HNHTSLGWILTYCTQTFYSSELTDRHHIHHSENH 245
           QHE +H+H+    H   A +  H+H   G +     Q        D+ H HH  +H
Sbjct: 60  QHEHHHHHHHQHQHQHQAPHQAHHHHHHGEVNHQAPQVHQQVHGQDQAHHHHHHHH 115

>SECA_SPIOL (Q36795) Preprotein translocase secA subunit, chloroplast precursor|
          Length = 1036

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 21/70 (30%), Positives = 32/70 (45%)
 Frame = -3

Query: 518 HFGELDSFVGFADVTAAKSLEEKLKASGVAHEVHIYPGCSHAFMNASPEALERRKGMGLT 339
           H   L   VG   V  ++SL E+L+ + + HEV          +NA PE +ER   +   
Sbjct: 511 HKTGLPVLVGTTSVEQSESLSEQLQQASIPHEV----------LNAKPENVEREAEIVAQ 560

Query: 338 DENQGAIDLA 309
               GA+ +A
Sbjct: 561 SGRLGAVTIA 570

>HXB3_HUMAN (P14651) Homeobox protein Hox-B3 (Hox-2G) (Hox-2.7)|
          Length = 431

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 225 IHHSENHMDGNCSCRSQETAHPSGEAGPCQVNGSLILISQTHALPP 362
           ++H  +H  GN          PS   GPC+ + +   +S  HA PP
Sbjct: 373 LNHLSHHPSGNLDYNGAPPMAPSQHHGPCEPHPTYTDLSSHHAPPP 418

>GCVK_HCMVT (Q68101) Phosphotransferase UL97 (EC 2.7.1.-) (Ganciclovir kinase)|
          Length = 707

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 255 NCSCRSQETAHPSGEAGPCQVNGSLILISQTHALPPLEGLRR-CVHE 392
           NCS R +E  HP+    P Q     +LI   HA  P+ GLRR C+ E
Sbjct: 510 NCSHRLRECYHPAFRPMPLQ----KLLICDPHARFPVAGLRRYCMSE 552

>GCVK_HCMVA (P16788) Phosphotransferase UL97 (EC 2.7.1.-) (Ganciclovir kinase)|
           (HSRF3 protein)
          Length = 707

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 255 NCSCRSQETAHPSGEAGPCQVNGSLILISQTHALPPLEGLRR-CVHE 392
           NCS R +E  HP+    P Q     +LI   HA  P+ GLRR C+ E
Sbjct: 510 NCSHRLRECYHPAFRPMPLQ----KLLICDPHARFPVAGLRRYCMSE 552

>OL56_STRAT (Q07017) Oleandomycin polyketide synthase, modules 5 and 6|
          Length = 3519

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +3

Query: 294  GEAGPCQVNG--SLILISQTHALPPLEGLRRCVHEGVGASRVYVDFMCHSRSLELLLQRL 467
            G      VNG  S ++     AL  L  L  C  EGV A RV VD+  HS  ++ L   L
Sbjct: 2368 GRVSVAAVNGPSSTVVSGDVQALDEL--LAGCEREGVRARRVPVDYASHSAQMDQLRDEL 2425



 Score = 30.4 bits (67), Expect = 3.1
 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +3

Query: 294 GEAGPCQVNG--SLILISQTHALPPLEGLRRCVHEGVGASRVYVDFMCHSRSLELLLQRL 467
           G      VNG  S ++     AL  L  L  C  EGV A RV VD+  HS  ++ L   L
Sbjct: 717 GRLSVAAVNGPSSTVVSGDVQALDEL--LAGCEREGVRARRVPVDYASHSAQMDQLRDEL 774

>ZFP90_RAT (Q4V8A8) Zinc finger protein 90 (Zfp-90)|
          Length = 633

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +3

Query: 180 CTQTF-YSSELTDRHHIHHSENHMDGNCSCRSQETAHPSGEAGPCQVNG 323
           C + F + ++ T+   IH  EN  D   + R Q  +HP  +   C V G
Sbjct: 452 CGKDFSHITDFTEHQRIHAGENSYDSEQALRQQSLSHPREKPYQCNVCG 500

>YB88_YEAST (P38330) Protein YBR238C|
          Length = 731

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 19/77 (24%)
 Frame = +3

Query: 90  NHNHNTTQNHDELA*Y**HNHTSLG-------------WILTYC------TQTFYSSELT 212
           NH+HN  +NH +      HNH+                W    C      +QT Y S+  
Sbjct: 105 NHHHNNNRNHHQNN----HNHSKYNNSNQGNSISPDSPWFHKVCAFEDCVSQTLYMSQTP 160

Query: 213 DRHHIHHSENHMDGNCS 263
            R ++ H   H + N +
Sbjct: 161 RRQNMKHHSEHPNSNAN 177

>Y1571_AERPE (Q9YBM7) Hypothetical protein APE1571|
          Length = 469

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = +1

Query: 223 IYIIQRTIWMVIAHADPRKRPIQVEKRGHARSMAP*FSSVKPMPFLLSRASGDAFMK-AW 399
           ++ + + IW V +H DP +R + V    H   + P      P P   S+   DA  K   
Sbjct: 384 VHDVNQVIWAVSSHVDP-QRDVLVVPHSHTDELDP----ATPTPMYGSKLGIDATRKLPE 438

Query: 400 EHPGYMWTSCATPE 441
           E+ G  W     P+
Sbjct: 439 EYGGKQWPEEVAPD 452

>SECA_ARATH (Q9SYI0) Preprotein translocase secA subunit, chloroplast precursor|
          Length = 1021

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -3

Query: 494 VGFADVTAAKSLEEKLKASGVAHEVHIYPGCSHAFMNASPEALERRKGMGLTDENQGAID 315
           VG   V  +  L + L+ +G+ HEV          +NA PE +ER   +       GA+ 
Sbjct: 510 VGTTSVEQSDELSQLLREAGITHEV----------LNAKPENVEREAEIVAQSGRLGAVT 559

Query: 314 LA 309
           +A
Sbjct: 560 IA 561

>DLL4_XENLA (P53775) Homeobox protein DLL-4 (XDLL-4)|
          Length = 285

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 293 WRSGAMPGQWLPDSHQSNPCPSSS 364
           W+SG +P   LP   +S+PC S S
Sbjct: 186 WKSGEIPSDQLPVGSESSPCSSPS 209

>ADA12_HUMAN (O43184) ADAM 12 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 12) (Meltrin alpha)
          Length = 909

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = -2

Query: 282 PFPGICMSNYHPYGSLNDVYGVCQSAQKNKMSGCNMSVSNLG*YGC 145
           P PGIC    +  G   D YG C    K+  + C M  +  G   C
Sbjct: 543 PAPGICFERVNSAG---DPYGNCGKVSKSSFAKCEMRDAKCGKIQC 585

>ZBT39_HUMAN (O15060) Zinc finger and BTB domain-containing protein 39|
          Length = 712

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +3

Query: 168 ILTYCTQTFYSSELTDRHH--IHHSENHMDGNCSCRSQETAHPSGE 299
           +L  C  TF   E T R       SE+H  G  SC S E AHP GE
Sbjct: 114 LLQACHSTFPDLESTARAKPLTSTSESH-SGTLSCPSAEPAHPLGE 158

>Y4495_PHOPR (Q6LK12) UPF0060 membrane protein PBPRB0495|
          Length = 110

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = -1

Query: 256 LPSIWFSE*-CIWCLSVSSEE*NVWVQYVSIQPRLVWLCYQYYANSS*FCVVLWLWL 89
           LP +W  E   IW L  ++    ++   +++ P      Y  Y     F  +LWLWL
Sbjct: 23  LPYLWLREGKTIWLLIPAAISLALFAWLLTLHPAAAGRVYAAYGGVYIFTAILWLWL 79

>ZFP90_HUMAN (Q8TF47) Zinc finger protein 90 homolog (Zfp-90)|
          Length = 636

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
 Frame = +3

Query: 72  SIQHESNHNHNTTQNHDELA*Y**HNHTSLGWILTY----CTQTF-YSSELTDRHHIHHS 236
           S  +  +  H+T+   DE         ++L  + +Y    C + F + ++ TD   IH +
Sbjct: 424 SSNYSIDFKHSTSLTQDE---------STLTEVKSYHCNDCGEDFSHITDFTDHQRIHTA 474

Query: 237 ENHMDGNCSCRSQETAHPSGEAGPCQVNG 323
           EN  D   +   Q  +HP  +   C V G
Sbjct: 475 ENPYDCEQAFSQQAISHPGEKPYQCNVCG 503

>NMDE2_RAT (Q00960) Glutamate [NMDA] receptor subunit epsilon 2 precursor|
            (N-methyl D-aspartate receptor subtype 2B) (NR2B)
            (NMDAR2B)
          Length = 1482

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +2

Query: 302  GAMPGQWLPD---SHQSNPCPSSSRGPQAMRS*RRGSI 406
            GA+PG++  D    +QSNPC  +++ P+A      G +
Sbjct: 1434 GAVPGRFQKDICIGNQSNPCVPNNKNPRAFNGSSNGHV 1471

>NMDE2_MOUSE (Q01097) Glutamate [NMDA] receptor subunit epsilon 2 precursor|
            (N-methyl D-aspartate receptor subtype 2B) (NR2B)
            (NMDAR2B)
          Length = 1482

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +2

Query: 302  GAMPGQWLPD---SHQSNPCPSSSRGPQAMRS*RRGSI 406
            GA+PG++  D    +QSNPC  +++ P+A      G +
Sbjct: 1434 GAVPGRFQKDICIGNQSNPCVPNNKNPRAFNGSSNGHV 1471

>CRT10_YEAST (Q08226) Protein CRT10 (Constitutive RNR transcription regulator|
           10)
          Length = 957

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +3

Query: 327 LILISQTH-ALPPLEGLRRCVHEGVGASRVYVDFMCHSRSLELL 455
           LI+IS TH  + PL+G+  C  + +  +   ++F+CH + L  +
Sbjct: 792 LIIISATHHEIFPLDGVVTCASKSLLQALNRINFVCHIKELNCI 835

>YAC1_MAIZE (P08771) Transposable element activator hypothetical 12 kDa protein|
           (AC 12 kDa protein)
          Length = 102

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 51  ISLPWRYSIQHESNHNHNTTQNH 119
           + + W   + H  NHNHN   NH
Sbjct: 10  VKMIWLLFMNHNHNHNHNQNHNH 32


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,573,313
Number of Sequences: 219361
Number of extensions: 1996882
Number of successful extensions: 5318
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 5032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5299
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 3970331829
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)