ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart29c06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK106208.1| Oryza sativa (japonica cultivar-group) cDNA clon... 278 2e-71
2dbj|AK104379.1| Oryza sativa (japonica cultivar-group) cDNA clon... 278 2e-71
3dbj|AK059992.1| Oryza sativa (japonica cultivar-group) cDNA clon... 278 2e-71
4ref|NM_193188.1| Oryza sativa (japonica cultivar-group), predic... 276 7e-71
5gb|BT016534.1| Zea mays clone Contig367 mRNA sequence 206 5e-50
6gb|AY104907.1| Zea mays PCO117250 mRNA sequence 206 5e-50
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 190 3e-45
8dbj|AP003350.3| Oryza sativa (japonica cultivar-group) genomic D... 190 3e-45
9gb|AY086081.1| Arabidopsis thaliana clone 2114 mRNA, complete se... 52 0.002
10ref|NM_128811.2| Arabidopsis thaliana hydrolase AT2G32520 mRNA, ... 44 0.46
11gb|AC159436.1| Trypanosoma brucei chromosome 5 clone RPCI93-29K2... 44 0.46
12emb|AL354814.19| Human DNA sequence from clone RP11-94N9 on chro... 44 0.46
13emb|AL671259.1|TBH25N7 Trypanosoma brucei 221 VSG expression sit... 44 0.46
14gb|AC015724.9| Homo sapiens chromosome 17, clone RP11-45J24, com... 44 0.46
15gb|AC093427.2| Homo sapiens chromosome 1 clone RP5-1080K5, compl... 44 0.46
16gb|BT006416.1| Arabidopsis thaliana At2g32520 gene, complete cds 44 0.46
17gb|AC007688.15| Homo sapiens 12 BAC RPCI11-392P7 (Roswell Park C... 42 1.8
18gb|AC004681.3| Arabidopsis thaliana chromosome 2 clone T26B15 ma... 42 1.8
19gb|AC153986.8| Mus musculus 6 BAC RP24-105F24 (Roswell Park Canc... 42 1.8
20dbj|AP001073.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
21gb|CP000026.1| Salmonella enterica subsp. enterica serovar Parat... 42 1.8
22dbj|AK067610.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.8
23gb|AC006449.19|AC006449 Homo sapiens chromosome 17, clone hCIT.5... 42 1.8
24gb|AC153640.6| Mus musculus 6 BAC RP23-230A2 (Roswell Park Cance... 42 1.8
25gb|AC167172.3| Mus musculus BAC clone RP23-166M7 from chromosome... 40 7.1
26gb|AC163722.6| Mus musculus BAC clone RP23-447O11 from chromosom... 40 7.1
27gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.1
28gb|AC131672.3| Mus musculus chromosome UNK clone RP23-314O21, co... 40 7.1
29gb|AC146254.2| Pan troglodytes BAC clone CH251-128L22 from Y, co... 40 7.1
30gb|AC138171.17| Medicago truncatula clone mth2-7f10, complete se... 40 7.1
31gb|AC139708.15| Medicago truncatula clone mth2-9f16, complete se... 40 7.1
32gb|AC152407.19| Medicago truncatula clone mth2-77l23, complete s... 40 7.1
33gb|AC096035.6| Rattus norvegicus 4 BAC CH230-16M16 (Children's H... 40 7.1
34emb|AL356096.11| Human DNA sequence from clone RP11-366K1 on chr... 40 7.1
35emb|BX045613.1|CNS097CX Single read from an extremity of a full-... 40 7.1
36gb|AC046170.6| Homo sapiens chromosome 17, clone RP11-219F9, com... 40 7.1
37gb|AF377865.1| Feline papillomavirus putative transforming prote... 40 7.1
38dbj|BS000629.2| Pan troglodytes chromosome Y clone: PTB-194O02, ... 40 7.1
39dbj|BS000552.1| Pan troglodytes chromosome Y clone:PTB-302F24, c... 40 7.1
40gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 7.1
41gb|AC157978.25| Medicago truncatula clone mth2-47l16, complete s... 40 7.1
42gb|AC118981.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 7.1
43dbj|AK135908.1| Mus musculus in vitro fertilized eggs cDNA, RIKE... 40 7.1
44gb|AF480454.1| Felis domesticus papillomavirus type 1, complete ... 40 7.1
45gb|AC159032.2| Pan troglodytes BAC clone CH251-358H13 from chrom... 40 7.1
46gb|AC149130.2| Medicago truncatula chromosome 2 BAC clone mth2-1... 40 7.1
47gb|AC148918.3| Medicago truncatula chromosome 2 BAC clone mth2-4... 40 7.1
48dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
49gb|AC139026.4| Homo sapiens chromosome 17, clone CTD-2514I13, co... 40 7.1
50emb|BX005183.9| Zebrafish DNA sequence from clone CH211-136A14 i... 40 7.1
51gb|AC069164.11|AC069164 Homo sapiens chromosome 13 clone RP11-33... 40 7.1
52gb|AC018686.7| Homo sapiens BAC clone RP11-458M16 from 2, comple... 40 7.1
53gb|AC135972.11| Homo sapiens chromosome 17, clone CTD-2530H17, c... 40 7.1
54gb|AC004098.1|AC004098 Homo sapiens chromosome 17, clone HCIT305... 40 7.1
55dbj|AP000416.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 7.1
56gb|AC004474.1|AC004474 Homo sapiens chromosome Y, clone 475I1, c... 40 7.1
57emb|CR962124.2| Medicago truncatula chromosome 5 clone mth2-44c1... 40 7.1
58gb|AC142274.3| Mus musculus BAC clone RP23-251M14 from 6, comple... 40 7.1
59emb|AL606920.5| Mouse DNA sequence from clone RP23-183J6 on chro... 40 7.1
60emb|AL844199.8| Mouse DNA sequence from clone RP23-39F22 on chro... 40 7.1 
>dbj|AK106208.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-G04, full
           insert sequence
          Length = 1086

 Score =  278 bits (140), Expect = 2e-71
 Identities = 236/268 (88%)
 Strand = Plus / Minus

                                                                       
Query: 259 gctcatgcagatcccaggaaacggcccatccaagtggagaagcggggccatgccaggtca 318
           ||||| || ||||| |||||||| ||||||||||| |||||||| | ||| |||||||||
Sbjct: 891 gctcacgccgatccaaggaaacgacccatccaagtcgagaagcgagaccaggccaggtca 832

                                                                       
Query: 319 atggctccctgattctcatcagtcaaacccatgcccttcctcctctcgagggcctcaggc 378
           || ||| |||| ||||||||||||| ||||||  |||||||||||| || ||||||||| 
Sbjct: 831 attgctgcctggttctcatcagtcagacccatctccttcctcctcttgacggcctcaggt 772

                                                                       
Query: 379 gatgcgttcatgaaggcgtgggagcatccagggtatatgtggacttcatgtgccactcca 438
           |||| |||||| || || || ||||| |||||||| |||||||||||||||| ||| |||
Sbjct: 771 gatgtgttcataaaagcatgcgagcagccagggtagatgtggacttcatgtggcacgcca 712

                                                                       
Query: 439 gaagccttgagcttctcctccaacgacttggccgcggtaacatctgcaaatccaacaaaa 498
           || | ||||||||||||||||| ||||||||| || || |||||||||||||||||||||
Sbjct: 711 gatgacttgagcttctcctccagcgacttggctgccgtgacatctgcaaatccaacaaaa 652

                                       
Query: 499 ctgtcaagctccccaaaatgagcctgga 526
           ||||||||||||||||||||||||||||
Sbjct: 651 ctgtcaagctccccaaaatgagcctgga 624
to top
>dbj|AK104379.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-G12, full
           insert sequence
          Length = 1010

 Score =  278 bits (140), Expect = 2e-71
 Identities = 236/268 (88%)
 Strand = Plus / Minus

                                                                       
Query: 259 gctcatgcagatcccaggaaacggcccatccaagtggagaagcggggccatgccaggtca 318
           ||||| || ||||| |||||||| ||||||||||| |||||||| | ||| |||||||||
Sbjct: 835 gctcacgccgatccaaggaaacgacccatccaagtcgagaagcgagaccaggccaggtca 776

                                                                       
Query: 319 atggctccctgattctcatcagtcaaacccatgcccttcctcctctcgagggcctcaggc 378
           || ||| |||| ||||||||||||| ||||||  |||||||||||| || ||||||||| 
Sbjct: 775 attgctgcctggttctcatcagtcagacccatctccttcctcctcttgacggcctcaggt 716

                                                                       
Query: 379 gatgcgttcatgaaggcgtgggagcatccagggtatatgtggacttcatgtgccactcca 438
           |||| |||||| || || || ||||| |||||||| |||||||||||||||| ||| |||
Sbjct: 715 gatgtgttcataaaagcatgcgagcagccagggtagatgtggacttcatgtggcacgcca 656

                                                                       
Query: 439 gaagccttgagcttctcctccaacgacttggccgcggtaacatctgcaaatccaacaaaa 498
           || | ||||||||||||||||| ||||||||| || || |||||||||||||||||||||
Sbjct: 655 gatgacttgagcttctcctccagcgacttggctgccgtgacatctgcaaatccaacaaaa 596

                                       
Query: 499 ctgtcaagctccccaaaatgagcctgga 526
           ||||||||||||||||||||||||||||
Sbjct: 595 ctgtcaagctccccaaaatgagcctgga 568
to top
>dbj|AK059992.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-C04, full
           insert sequence
          Length = 1014

 Score =  278 bits (140), Expect = 2e-71
 Identities = 236/268 (88%)
 Strand = Plus / Minus

                                                                       
Query: 259 gctcatgcagatcccaggaaacggcccatccaagtggagaagcggggccatgccaggtca 318
           ||||| || ||||| |||||||| ||||||||||| |||||||| | ||| |||||||||
Sbjct: 837 gctcacgccgatccaaggaaacgacccatccaagtcgagaagcgagaccaggccaggtca 778

                                                                       
Query: 319 atggctccctgattctcatcagtcaaacccatgcccttcctcctctcgagggcctcaggc 378
           || ||| |||| ||||||||||||| ||||||  |||||||||||| || ||||||||| 
Sbjct: 777 attgctgcctggttctcatcagtcagacccatctccttcctcctcttgacggcctcaggt 718

                                                                       
Query: 379 gatgcgttcatgaaggcgtgggagcatccagggtatatgtggacttcatgtgccactcca 438
           |||| |||||| || || || ||||| |||||||| |||||||||||||||| ||| |||
Sbjct: 717 gatgtgttcataaaagcatgcgagcagccagggtagatgtggacttcatgtggcacgcca 658

                                                                       
Query: 439 gaagccttgagcttctcctccaacgacttggccgcggtaacatctgcaaatccaacaaaa 498
           || | ||||||||||||||||| ||||||||| || || |||||||||||||||||||||
Sbjct: 657 gatgacttgagcttctcctccagcgacttggctgccgtgacatctgcaaatccaacaaaa 598

                                       
Query: 499 ctgtcaagctccccaaaatgagcctgga 526
           ||||||||||||||||||||||||||||
Sbjct: 597 ctgtcaagctccccaaaatgagcctgga 570
to top
>ref|NM_193188.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 846

 Score =  276 bits (139), Expect = 7e-71
 Identities = 229/259 (88%)
 Strand = Plus / Minus

                                                                       
Query: 268 gatcccaggaaacggcccatccaagtggagaagcggggccatgccaggtcaatggctccc 327
           ||||| |||||||| ||||||||||| |||||||| | ||| ||||||||||| ||| ||
Sbjct: 839 gatccaaggaaacgacccatccaagtcgagaagcgagaccaggccaggtcaattgctgcc 780

                                                                       
Query: 328 tgattctcatcagtcaaacccatgcccttcctcctctcgagggcctcaggcgatgcgttc 387
           || ||||||||||||| ||||||  |||||||||||| || ||||||||| |||| ||||
Sbjct: 779 tggttctcatcagtcagacccatctccttcctcctcttgacggcctcaggtgatgtgttc 720

                                                                       
Query: 388 atgaaggcgtgggagcatccagggtatatgtggacttcatgtgccactccagaagccttg 447
           || || || || ||||| |||||||| |||||||||||||||| ||| ||||| | ||||
Sbjct: 719 ataaaagcatgcgagcagccagggtagatgtggacttcatgtggcacgccagatgacttg 660

                                                                       
Query: 448 agcttctcctccaacgacttggccgcggtaacatctgcaaatccaacaaaactgtcaagc 507
           ||||||||||||| ||||||||| || || ||||||||||||||||||||||||||||||
Sbjct: 659 agcttctcctccagcgacttggctgccgtgacatctgcaaatccaacaaaactgtcaagc 600

                              
Query: 508 tccccaaaatgagcctgga 526
           |||||||||||||||||||
Sbjct: 599 tccccaaaatgagcctgga 581
to top
>gb|BT016534.1| Zea mays clone Contig367 mRNA sequence
          Length = 1037

 Score =  206 bits (104), Expect = 5e-50
 Identities = 221/260 (85%)
 Strand = Plus / Minus

                                                                       
Query: 265 gcagatcccaggaaacggcccatccaagtggagaagcggggccatgccaggtcaatggct 324
           |||||||| ||||| |||||||||||||  |||||||| | ||| |||||||| | ||||
Sbjct: 867 gcagatccgaggaaccggcccatccaagaagagaagcgagaccaggccaggtcgacggct 808

                                                                       
Query: 325 ccctgattctcatcagtcaaacccatgcccttcctcctctcgagggcctcaggcgatgcg 384
            |||| ||||||||||||| |||||| |||||| |||||| ||| ||||||||||| | |
Sbjct: 807 tcctggttctcatcagtcagacccatccccttcttcctcttgagtgcctcaggcgaagtg 748

                                                                       
Query: 385 ttcatgaaggcgtgggagcatccagggtatatgtggacttcatgtgccactccagaagcc 444
           ||||||||||| || || ||||||||||||||||| ||||||| ||  |  || ||||  
Sbjct: 747 ttcatgaaggcatgcgaacatccagggtatatgtgaacttcatatggtatcccggaagat 688

                                                                       
Query: 445 ttgagcttctcctccaacgacttggccgcggtaacatctgcaaatccaacaaaactgtca 504
           ||||||||||||||||  |||||||| || || ||||||| ||| |||||||||||||||
Sbjct: 687 ttgagcttctcctccagggacttggctgcagtgacatctgaaaaaccaacaaaactgtca 628

                               
Query: 505 agctccccaaaatgagcctg 524
            ||||||| |||||||||||
Sbjct: 627 tgctccccgaaatgagcctg 608
to top
>gb|AY104907.1| Zea mays PCO117250 mRNA sequence
          Length = 1130

 Score =  206 bits (104), Expect = 5e-50
 Identities = 221/260 (85%)
 Strand = Plus / Minus

                                                                       
Query: 265 gcagatcccaggaaacggcccatccaagtggagaagcggggccatgccaggtcaatggct 324
           |||||||| ||||| |||||||||||||  |||||||| | ||| |||||||| | ||||
Sbjct: 880 gcagatccgaggaaccggcccatccaagaagagaagcgagaccaggccaggtcgacggct 821

                                                                       
Query: 325 ccctgattctcatcagtcaaacccatgcccttcctcctctcgagggcctcaggcgatgcg 384
            |||| ||||||||||||| |||||| |||||| |||||| ||| ||||||||||| | |
Sbjct: 820 tcctggttctcatcagtcagacccatccccttcttcctcttgagtgcctcaggcgaagtg 761

                                                                       
Query: 385 ttcatgaaggcgtgggagcatccagggtatatgtggacttcatgtgccactccagaagcc 444
           ||||||||||| || || ||||||||||||||||| ||||||| ||  |  || ||||  
Sbjct: 760 ttcatgaaggcatgcgaacatccagggtatatgtgaacttcatatggtatcccggaagat 701

                                                                       
Query: 445 ttgagcttctcctccaacgacttggccgcggtaacatctgcaaatccaacaaaactgtca 504
           ||||||||||||||||  |||||||| || || ||||||| ||| |||||||||||||||
Sbjct: 700 ttgagcttctcctccagggacttggctgcagtgacatctgaaaaaccaacaaaactgtca 641

                               
Query: 505 agctccccaaaatgagcctg 524
            ||||||| |||||||||||
Sbjct: 640 tgctccccgaaatgagcctg 621
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  190 bits (96), Expect = 3e-45
 Identities = 183/212 (86%)
 Strand = Plus / Minus

                                                                            
Query: 259      gctcatgcagatcccaggaaacggcccatccaagtggagaagcggggccatgccaggtca 318
                ||||| || ||||| |||||||| ||||||||||| |||||||| | ||| |||||||||
Sbjct: 19135808 gctcacgccgatccaaggaaacgacccatccaagtcgagaagcgagaccaggccaggtca 19135749

                                                                            
Query: 319      atggctccctgattctcatcagtcaaacccatgcccttcctcctctcgagggcctcaggc 378
                || ||| |||| ||||||||||||| ||||||  |||||||||||| || ||||||||| 
Sbjct: 19135748 attgctgcctggttctcatcagtcagacccatctccttcctcctcttgacggcctcaggt 19135689

                                                                            
Query: 379      gatgcgttcatgaaggcgtgggagcatccagggtatatgtggacttcatgtgccactcca 438
                |||| |||||| || || || ||||| |||||||| |||||||||||||||| ||| |||
Sbjct: 19135688 gatgtgttcataaaagcatgcgagcagccagggtagatgtggacttcatgtggcacgcca 19135629

                                                
Query: 439      gaagccttgagcttctcctccaacgacttggc 470
                || | ||||||||||||||||| |||||||||
Sbjct: 19135628 gatgacttgagcttctcctccagcgacttggc 19135597



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 49/49 (100%)
 Strand = Plus / Minus

                                                                 
Query: 478      acatctgcaaatccaacaaaactgtcaagctccccaaaatgagcctgga 526
                |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19135310 acatctgcaaatccaacaaaactgtcaagctccccaaaatgagcctgga 19135262



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 232     attcagagaaccatatggatg 252
               |||||||||||||||||||||
Sbjct: 9273040 attcagagaaccatatggatg 9273060
to top
>dbj|AP003350.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0702H08
          Length = 166899

 Score =  190 bits (96), Expect = 3e-45
 Identities = 183/212 (86%)
 Strand = Plus / Minus

                                                                          
Query: 259    gctcatgcagatcccaggaaacggcccatccaagtggagaagcggggccatgccaggtca 318
              ||||| || ||||| |||||||| ||||||||||| |||||||| | ||| |||||||||
Sbjct: 101225 gctcacgccgatccaaggaaacgacccatccaagtcgagaagcgagaccaggccaggtca 101166

                                                                          
Query: 319    atggctccctgattctcatcagtcaaacccatgcccttcctcctctcgagggcctcaggc 378
              || ||| |||| ||||||||||||| ||||||  |||||||||||| || ||||||||| 
Sbjct: 101165 attgctgcctggttctcatcagtcagacccatctccttcctcctcttgacggcctcaggt 101106

                                                                          
Query: 379    gatgcgttcatgaaggcgtgggagcatccagggtatatgtggacttcatgtgccactcca 438
              |||| |||||| || || || ||||| |||||||| |||||||||||||||| ||| |||
Sbjct: 101105 gatgtgttcataaaagcatgcgagcagccagggtagatgtggacttcatgtggcacgcca 101046

                                              
Query: 439    gaagccttgagcttctcctccaacgacttggc 470
              || | ||||||||||||||||| |||||||||
Sbjct: 101045 gatgacttgagcttctcctccagcgacttggc 101014



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 49/49 (100%)
 Strand = Plus / Minus

                                                               
Query: 478    acatctgcaaatccaacaaaactgtcaagctccccaaaatgagcctgga 526
              |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100727 acatctgcaaatccaacaaaactgtcaagctccccaaaatgagcctgga 100679
to top
>gb|AY086081.1| Arabidopsis thaliana clone 2114 mRNA, complete sequence
          Length = 931

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 89/110 (80%)
 Strand = Plus / Minus

                                                                       
Query: 415 atgtggacttcatgtgccactccagaagccttgagcttctcctccaacgacttggccgcg 474
           ||||| ||||||||||| |||||||| || || |||||||| || |    ||| || || 
Sbjct: 614 atgtgaacttcatgtgctactccagacgctttcagcttctcttcgagattctttgctgcc 555

                                                             
Query: 475 gtaacatctgcaaatccaacaaaactgtcaagctccccaaaatgagcctg 524
           || ||||| | ||| ||||||||| |||| ||||| ||||||||||||||
Sbjct: 554 gtgacatcagaaaaaccaacaaaattgtcgagctctccaaaatgagcctg 505
to top
>ref|NM_128811.2| Arabidopsis thaliana hydrolase AT2G32520 mRNA, complete cds
          Length = 1118

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 88/110 (80%)
 Strand = Plus / Minus

                                                                       
Query: 415 atgtggacttcatgtgccactccagaagccttgagcttctcctccaacgacttggccgcg 474
           ||||| ||||||||||| |||||||| || || |||||||| || |    ||| || || 
Sbjct: 666 atgtgaacttcatgtgctactccagacgctttcagcttctcttcgagattctttgctgcc 607

                                                             
Query: 475 gtaacatctgcaaatccaacaaaactgtcaagctccccaaaatgagcctg 524
           || ||||| | ||| || |||||| |||| ||||| ||||||||||||||
Sbjct: 606 gtgacatcagaaaaaccgacaaaattgtcgagctctccaaaatgagcctg 557
to top
>gb|AC159436.1| Trypanosoma brucei chromosome 5 clone RPCI93-29K2, complete sequence
          Length = 135147

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 56   ccttccctggagatattccatc 77
            ||||||||||||||||||||||
Sbjct: 2237 ccttccctggagatattccatc 2216
to top
>emb|AL354814.19| Human DNA sequence from clone RP11-94N9 on chromosome 13q13.3-14.3
             Contains a guanine nucleotide binding protein (G protein),
             gamma 5 (GNG5) pseudogene, complete sequence
          Length = 70126

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 257   ttgctcatgcagatcccaggaaacggccca 286
             |||||| ||||||||||||||||| |||||
Sbjct: 64827 ttgctcctgcagatcccaggaaacagccca 64856
to top
>emb|AL671259.1|TBH25N7 Trypanosoma brucei 221 VSG expression site BAC
          Length = 123706

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 56    ccttccctggagatattccatc 77
             ||||||||||||||||||||||
Sbjct: 25527 ccttccctggagatattccatc 25548
to top
>gb|AC015724.9| Homo sapiens chromosome 17, clone RP11-45J24, complete sequence
          Length = 189055

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 226    tacatcattcagagaaccatat 247
              ||||||||||||||||||||||
Sbjct: 106483 tacatcattcagagaaccatat 106504
to top
>gb|AC093427.2| Homo sapiens chromosome 1 clone RP5-1080K5, complete sequence
          Length = 131877

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 90    aaccacaaccacaacacaacacaaaa 115
             |||||||||||||||| |||||||||
Sbjct: 67258 aaccacaaccacaacaaaacacaaaa 67283
to top
>gb|BT006416.1| Arabidopsis thaliana At2g32520 gene, complete cds
          Length = 720

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 88/110 (80%)
 Strand = Plus / Minus

                                                                       
Query: 415 atgtggacttcatgtgccactccagaagccttgagcttctcctccaacgacttggccgcg 474
           ||||| ||||||||||| |||||||| || || |||||||| || |    ||| || || 
Sbjct: 572 atgtgaacttcatgtgctactccagacgctttcagcttctcttcgagattctttgctgcc 513

                                                             
Query: 475 gtaacatctgcaaatccaacaaaactgtcaagctccccaaaatgagcctg 524
           || ||||| | ||| || |||||| |||| ||||| ||||||||||||||
Sbjct: 512 gtgacatcagaaaaaccgacaaaattgtcgagctctccaaaatgagcctg 463
to top
>gb|AC007688.15| Homo sapiens 12 BAC RPCI11-392P7 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 161577

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 487   aatccaacaaaactgtcaagctccc 511
             |||||||||||||||| ||||||||
Sbjct: 17558 aatccaacaaaactgtgaagctccc 17534
to top
>gb|AC004681.3| Arabidopsis thaliana chromosome 2 clone T26B15 map TEn5, complete
             sequence
          Length = 78732

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 415   atgtggacttcatgtgccactccagaagccttgagcttctc 455
             ||||| ||||||||||| |||||||| || || ||||||||
Sbjct: 26332 atgtgaacttcatgtgctactccagacgctttcagcttctc 26372



 Score = 40.1 bits (20), Expect = 7.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 493   acaaaactgtcaagctccccaaaatgagcctg 524
             |||||| |||| ||||| ||||||||||||||
Sbjct: 26494 acaaaattgtcgagctctccaaaatgagcctg 26525
to top
>gb|AC153986.8| Mus musculus 6 BAC RP24-105F24 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 162415

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 23    gtttatgtgacgtgttcagaa 43
             |||||||||||||||||||||
Sbjct: 21329 gtttatgtgacgtgttcagaa 21349
to top
>dbj|AP001073.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0667A10
          Length = 152237

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 232   attcagagaaccatatggatg 252
             |||||||||||||||||||||
Sbjct: 49634 attcagagaaccatatggatg 49654
to top
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
          Length = 4585229

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 429     tgccactccagaagccttgag 449
               |||||||||||||||||||||
Sbjct: 2567360 tgccactccagaagccttgag 2567340
to top
>dbj|AK067610.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013112F12, full
            insert sequence
          Length = 2264

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 232  attcagagaaccatatggatg 252
            |||||||||||||||||||||
Sbjct: 2100 attcagagaaccatatggatg 2080
to top
>gb|AC006449.19|AC006449 Homo sapiens chromosome 17, clone hCIT.58_E_17, complete sequence
          Length = 286758

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 345    acccatgcccttcctcctctc 365
              |||||||||||||||||||||
Sbjct: 155183 acccatgcccttcctcctctc 155163
to top
>gb|AC153640.6| Mus musculus 6 BAC RP23-230A2 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 208897

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 345   acccatgcccttcctcctctc 365
             |||||||||||||||||||||
Sbjct: 44461 acccatgcccttcctcctctc 44481
to top
>gb|AC167172.3| Mus musculus BAC clone RP23-166M7 from chromosome 3, complete sequence
          Length = 204419

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 89     taaccacaaccacaacacaa 108
              ||||||||||||||||||||
Sbjct: 100806 taaccacaaccacaacacaa 100825
to top
>gb|AC163722.6| Mus musculus BAC clone RP23-447O11 from chromosome 19, complete
             sequence
          Length = 178562

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 346   cccatgcccttcctcctctc 365
             ||||||||||||||||||||
Sbjct: 80775 cccatgcccttcctcctctc 80794
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 203     tgagctgactgacagacacc 222
               ||||||||||||||||||||
Sbjct: 7276375 tgagctgactgacagacacc 7276356
to top
>gb|AC131672.3| Mus musculus chromosome UNK clone RP23-314O21, complete sequence
          Length = 199837

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 201    tctgagctgactgacagaca 220
              ||||||||||||||||||||
Sbjct: 192476 tctgagctgactgacagaca 192457
to top
>gb|AC146254.2| Pan troglodytes BAC clone CH251-128L22 from Y, complete sequence
          Length = 177240

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    gtgttcagaagtgtttcatt 53
             ||||||||||||||||||||
Sbjct: 43736 gtgttcagaagtgtttcatt 43755
to top
>gb|AC138171.17| Medicago truncatula clone mth2-7f10, complete sequence
          Length = 104336

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 479   catctgcaaatccaacaaaa 498
             ||||||||||||||||||||
Sbjct: 28075 catctgcaaatccaacaaaa 28094
to top
>gb|AC139708.15| Medicago truncatula clone mth2-9f16, complete sequence
          Length = 117358

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 479   catctgcaaatccaacaaaa 498
             ||||||||||||||||||||
Sbjct: 94025 catctgcaaatccaacaaaa 94006
to top
>gb|AC152407.19| Medicago truncatula clone mth2-77l23, complete sequence
          Length = 113470

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 479   catctgcaaatccaacaaaa 498
             ||||||||||||||||||||
Sbjct: 20365 catctgcaaatccaacaaaa 20384
to top
>gb|AC096035.6| Rattus norvegicus 4 BAC CH230-16M16 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 228433

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 91     accacaaccacaacacaaca 110
              ||||||||||||||||||||
Sbjct: 129673 accacaaccacaacacaaca 129692
to top
>emb|AL356096.11| Human DNA sequence from clone RP11-366K1 on chromosome 13 Contains a
              novel gene and a CpG island, complete sequence
          Length = 190101

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 185    ccagacattttattcttctg 204
              ||||||||||||||||||||
Sbjct: 176645 ccagacattttattcttctg 176626
to top
>emb|BX045613.1|CNS097CX Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAC19DD11 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 782

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 94  acaaccacaacacaacacaa 113
           ||||||||||||||||||||
Sbjct: 140 acaaccacaacacaacacaa 121
to top
>gb|AC046170.6| Homo sapiens chromosome 17, clone RP11-219F9, complete sequence
          Length = 198470

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 438   agaagccttgagcttctcct 457
             ||||||||||||||||||||
Sbjct: 44748 agaagccttgagcttctcct 44729
to top
>gb|AF377865.1| Feline papillomavirus putative transforming protein E6 (E6), putative
            transforming protein E7 (E7), putative replication
            protein E1 (E1), and putative regulatory protein E2 (E2)
            genes, complete cds; putative protein E4 (E4) gene,
            partial cds; and putative minor capsid protein L2 (L2)
            and putative major capsid protein L1 (L1) genes, complete
            cds
          Length = 8300

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 495  aaaactgtcaagctccccaa 514
            ||||||||||||||||||||
Sbjct: 3542 aaaactgtcaagctccccaa 3561
to top
>dbj|BS000629.2| Pan troglodytes chromosome Y clone: PTB-194O02, complete sequence
          Length = 184689

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 34     gtgttcagaagtgtttcatt 53
              ||||||||||||||||||||
Sbjct: 109378 gtgttcagaagtgtttcatt 109397
to top
>dbj|BS000552.1| Pan troglodytes chromosome Y clone:PTB-302F24, complete sequences
          Length = 157728

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 34     gtgttcagaagtgtttcatt 53
              ||||||||||||||||||||
Sbjct: 100716 gtgttcagaagtgtttcatt 100697
to top
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 34       gtgttcagaagtgtttcatt 53
                ||||||||||||||||||||
Sbjct: 18032323 gtgttcagaagtgtttcatt 18032304
to top
>gb|AC157978.25| Medicago truncatula clone mth2-47l16, complete sequence
          Length = 125021

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 479   catctgcaaatccaacaaaa 498
             ||||||||||||||||||||
Sbjct: 80937 catctgcaaatccaacaaaa 80918
to top
>gb|AC118981.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0060E18, from chromosome 3, complete sequence
          Length = 147983

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 203   tgagctgactgacagacacc 222
             ||||||||||||||||||||
Sbjct: 27631 tgagctgactgacagacacc 27612
to top
>dbj|AK135908.1| Mus musculus in vitro fertilized eggs cDNA, RIKEN full-length
            enriched library, clone:7420436A12
            product:unclassifiable, full insert sequence
          Length = 3733

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 91   accacaaccacaacacaacacaaa 114
            ||||||||||||||| ||||||||
Sbjct: 3361 accacaaccacaacaaaacacaaa 3384
to top
>gb|AF480454.1| Felis domesticus papillomavirus type 1, complete genome
          Length = 8300

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 495  aaaactgtcaagctccccaa 514
            ||||||||||||||||||||
Sbjct: 3682 aaaactgtcaagctccccaa 3701
to top
>gb|AC159032.2| Pan troglodytes BAC clone CH251-358H13 from chromosome unknown,
             complete sequence
          Length = 183880

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 443   ccttgagcttctcctccaac 462
             ||||||||||||||||||||
Sbjct: 60034 ccttgagcttctcctccaac 60053
to top
>gb|AC149130.2| Medicago truncatula chromosome 2 BAC clone mth2-193n2, complete
             sequence
          Length = 132313

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    ccacaaccacaacacaacac 111
             ||||||||||||||||||||
Sbjct: 66862 ccacaaccacaacacaacac 66881
to top
>gb|AC148918.3| Medicago truncatula chromosome 2 BAC clone mth2-44o11, complete
             sequence
          Length = 126437

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 92    ccacaaccacaacacaacac 111
             ||||||||||||||||||||
Sbjct: 32924 ccacaaccacaacacaacac 32905
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 203     tgagctgactgacagacacc 222
               ||||||||||||||||||||
Sbjct: 7274270 tgagctgactgacagacacc 7274251
to top
>gb|AC139026.4| Homo sapiens chromosome 17, clone CTD-2514I13, complete sequence
          Length = 226696

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 438   agaagccttgagcttctcct 457
             ||||||||||||||||||||
Sbjct: 36110 agaagccttgagcttctcct 36129
to top
>emb|BX005183.9| Zebrafish DNA sequence from clone CH211-136A14 in linkage group 3,
             complete sequence
          Length = 168366

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 486   aaatccaacaaaactgtcaa 505
             ||||||||||||||||||||
Sbjct: 53125 aaatccaacaaaactgtcaa 53106
to top
>gb|AC069164.11|AC069164 Homo sapiens chromosome 13 clone RP11-338F18, complete sequence
          Length = 169903

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 185   ccagacattttattcttctg 204
             ||||||||||||||||||||
Sbjct: 25189 ccagacattttattcttctg 25170
to top
>gb|AC018686.7| Homo sapiens BAC clone RP11-458M16 from 2, complete sequence
          Length = 223367

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 441    agccttgagcttctcctcca 460
              ||||||||||||||||||||
Sbjct: 103270 agccttgagcttctcctcca 103251
to top
>gb|AC135972.11| Homo sapiens chromosome 17, clone CTD-2530H17, complete sequence
          Length = 158617

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 438    agaagccttgagcttctcct 457
              ||||||||||||||||||||
Sbjct: 105927 agaagccttgagcttctcct 105908
to top
>gb|AC004098.1|AC004098 Homo sapiens chromosome 17, clone HCIT305D20, complete sequence
          Length = 166978

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 438   agaagccttgagcttctcct 457
             ||||||||||||||||||||
Sbjct: 43719 agaagccttgagcttctcct 43700
to top
>dbj|AP000416.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MLE3
          Length = 3059

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 479 catctgcaaatccaacaaaa 498
           ||||||||||||||||||||
Sbjct: 725 catctgcaaatccaacaaaa 706
to top
>gb|AC004474.1|AC004474 Homo sapiens chromosome Y, clone 475I1, complete sequence
          Length = 148280

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 34    gtgttcagaagtgtttcatt 53
             ||||||||||||||||||||
Sbjct: 70380 gtgttcagaagtgtttcatt 70361
to top
>emb|CR962124.2| Medicago truncatula chromosome 5 clone mth2-44c15, COMPLETE SEQUENCE
          Length = 136068

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    ccacaaccacaacacaacac 111
             ||||||||||||||||||||
Sbjct: 33011 ccacaaccacaacacaacac 33030
to top
>gb|AC142274.3| Mus musculus BAC clone RP23-251M14 from 6, complete sequence
          Length = 179732

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 91    accacaaccacaacacaacacaaa 114
             ||||||||||||||| ||||||||
Sbjct: 27998 accacaaccacaacaaaacacaaa 27975
to top
>emb|AL606920.5| Mouse DNA sequence from clone RP23-183J6 on chromosome 3, complete
             sequence
          Length = 89297

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 89    taaccacaaccacaacacaa 108
             ||||||||||||||||||||
Sbjct: 86079 taaccacaaccacaacacaa 86060
to top
>emb|AL844199.8| Mouse DNA sequence from clone RP23-39F22 on chromosome 4, complete
              sequence
          Length = 205589

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 200    ttctgagctgactgacagacacca 223
              |||||||||||| |||||||||||
Sbjct: 142386 ttctgagctgacagacagacacca 142409


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,929,112
Number of Sequences: 3902068
Number of extensions: 4929112
Number of successful extensions: 100934
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100648
Number of HSP's gapped (non-prelim): 284
length of query: 526
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 503
effective length of database: 17,143,297,704
effective search space: 8623078745112
effective search space used: 8623078745112
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top