ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart29c05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009434.1| Triticum aestivum clone wlmk4.pk0003.f5:fis, full... 593 e-166
2ref|XM_466806.1| Oryza sativa (japonica cultivar-group), mRNA 260 3e-66
3ref|XM_506871.1| PREDICTED Oryza sativa (japonica cultivar-group... 260 3e-66
4dbj|AK103525.1| Oryza sativa (japonica cultivar-group) cDNA clon... 260 3e-66
5dbj|AK101006.1| Oryza sativa (japonica cultivar-group) cDNA clon... 260 3e-66
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 103 4e-19
7dbj|AP004053.3| Oryza sativa (japonica cultivar-group) genomic D... 103 4e-19
8gb|DQ200398.1| Solanum tuberosum clone 071C05 succinyl-CoA ligas... 72 2e-09
9gb|DQ294279.1| Solanum tuberosum clone 180E05 succinyl CoA ligas... 72 2e-09
10gb|BT013785.1| Lycopersicon esculentum clone 132678F, mRNA sequence 64 4e-07
11gb|AY180975.1| Lycopersicon esculentum succinyl CoA ligase beta ... 64 4e-07
12ref|NM_127601.2| Arabidopsis thaliana catalytic/ succinate-CoA l... 46 0.089
13emb|AJ001808.1|ATSCLBS Arabidopsis thaliana mRNA for Succinyl-Co... 46 0.089
14gb|AY128889.1| Arabidopsis thaliana succinyl-CoA ligase beta sub... 46 0.089
15gb|AY099707.1| Arabidopsis thaliana succinyl-CoA ligase beta sub... 46 0.089
16gb|AC007109.7| Arabidopsis thaliana chromosome 2 clone T13C7 map... 46 0.089
17gb|AC006569.5| Arabidopsis thaliana chromosome 2 clone F11A3 map... 46 0.089
18dbj|AK221149.1| Arabidopsis thaliana mRNA for succinyl-CoA ligas... 46 0.089
19gb|AY087596.1| Arabidopsis thaliana clone 36904 mRNA, complete s... 46 0.089
20emb|AL844600.3| Mouse DNA sequence from clone RP24-92D2 on chrom... 44 0.35
21gb|AF332093.1|AF332093 White spot syndrome virus, complete genome 42 1.4
22gb|AC025270.6| Homo sapiens chromosome 15 clone CTD-2165P21 map ... 42 1.4
23gb|AC009996.7|AC009996 Homo sapiens chromosome 15 clone RP11-151... 42 1.4
24gb|AF369029.2| White spot syndrome virus, complete genome 42 1.4
25gb|AF440570.1| Shrimp white spot syndrome virus, complete genome 42 1.4
26gb|AF061021.1|AF061021 Spirogyra sp. SVCK-253 actin mRNA, partia... 42 1.4
27gb|AC162884.4| Mus musculus chromosome 5, clone RP24-169E23, com... 40 5.5
28emb|Z72501.1|CEC04C11 Caenorhabditis elegans Cosmid C04C11, comp... 40 5.5
29emb|CR769786.9| Zebrafish DNA sequence from clone DKEY-256I5 in ... 40 5.5
30emb|AL512428.13| Human DNA sequence from clone RP11-373L11 on ch... 40 5.5
31emb|AL034545.2|HS542O23 Human DNA sequence from clone RP4-542O23... 40 5.5
32gb|CP000282.1| Saccharophagus degradans 2-40, complete genome 40 5.5
33gb|AC108497.1| Caenorhabditis briggsae cosmid CB010P02, complete... 40 5.5
34gb|AC101685.9| Mus musculus chromosome 5, clone RP23-187K3, comp... 40 5.5
35gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 40 5.5
36emb|AJ296145.1|FRU296145 Fugu rubripes ghrhr gene for growth hor... 40 5.5
37emb|Z79038.1|HSPA21A12 H.sapiens flow-sorted chromosome 6 HindII... 40 5.5 
>gb|BT009434.1| Triticum aestivum clone wlmk4.pk0003.f5:fis, full insert mRNA
           sequence
          Length = 955

 Score =  593 bits (299), Expect = e-166
 Identities = 382/411 (92%), Gaps = 2/411 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaacttcataacagttgctgcccaattttgtgcccatatagatttattaacacaaagatc 60
           ||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 922 gaacttcataacagtggctgctcaattttgtgcccatataggtttattaacacaaagatc 863

                                                                       
Query: 61  acaagtttaaagcaaaactcaaagtggaatcactccacttcnnnnnnn--tgcacttcaa 118
           ||| |||| ||| ||||||| ||||||||||||||||||||         ||||||||||
Sbjct: 862 acatgtttgaaggaaaactccaagtggaatcactccacttcaaaagaaaatgcacttcaa 803

                                                                       
Query: 119 gatttcgtcccccgaaatcagtaagaaagcaccactcctcttgtacgagtgaaaacagaa 178
           ||||||| |||||||||| || |||| |||| ||||||||| |||| |||||||||||||
Sbjct: 802 gatttcggcccccgaaataagcaagagagcagcactcctctcgtaccagtgaaaacagaa 743

                                                                       
Query: 179 ctttagactgatatgggacaatcattaatcatttgaccgatgcttttacagccttctcgg 238
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 742 ctttagactgatatggtacaatcattaatcatttgaccgatgcttttacagccttctctg 683

                                                                       
Query: 239 cagcatcatcaagatcctctgcagggatcaatggcattccactttccttaaaaatccttt 298
           |||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct: 682 cagcatcatcaagatcctctgcagtgatcaatgtcattccactttccttaagaatccttt 623

                                                                       
Query: 299 tcccttggtctacattggtgccttctagccgaacaacaacagggaccttaagatcaacct 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tcccttggtctacattggtgccttctagccgaacaacaacagggaccttaagatcaacct 563

                                                              
Query: 359 gtttagctgcattcactattccacttgctatcacatcacatttcatgatac 409
           |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 562 gtttagctgcattcactattccacttgctatcacgtcacatttcatgatac 512
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>ref|XM_466806.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1726

 Score =  260 bits (131), Expect = 3e-66
 Identities = 188/207 (90%)
 Strand = Plus / Minus

                                                                        
Query: 203  ttaatcatttgaccgatgcttttacagccttctcggcagcatcatcaagatcctctgcag 262
            ||||| ||||||| |||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct: 1393 ttaattatttgacagatgcttttacagctttctcagccgcatcatcaagatcctctgcag 1334

                                                                        
Query: 263  ggatcaatggcattccactttccttaaaaatccttttcccttggtctacattggtgcctt 322
             ||| || | ||||||||||||||| | |||||| ||||||||||| |||||||||||||
Sbjct: 1333 tgattaaggtcattccactttcctttagaatcctcttcccttggtcaacattggtgcctt 1274

                                                                        
Query: 323  ctagccgaacaacaacagggaccttaagatcaacctgtttagctgcattcactattccac 382
            | | ||||||||||||||| ||||| || ||||||||||| |||||||||||||||||||
Sbjct: 1273 ccaaccgaacaacaacaggcaccttcaggtcaacctgttttgctgcattcactattccac 1214

                                       
Query: 383  ttgctatcacatcacatttcatgatac 409
            |||||||||||||||||||||||||||
Sbjct: 1213 ttgctatcacatcacatttcatgatac 1187
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>ref|XM_506871.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1234_B11.18 mRNA
          Length = 1966

 Score =  260 bits (131), Expect = 3e-66
 Identities = 188/207 (90%)
 Strand = Plus / Minus

                                                                        
Query: 203  ttaatcatttgaccgatgcttttacagccttctcggcagcatcatcaagatcctctgcag 262
            ||||| ||||||| |||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct: 1393 ttaattatttgacagatgcttttacagctttctcagccgcatcatcaagatcctctgcag 1334

                                                                        
Query: 263  ggatcaatggcattccactttccttaaaaatccttttcccttggtctacattggtgcctt 322
             ||| || | ||||||||||||||| | |||||| ||||||||||| |||||||||||||
Sbjct: 1333 tgattaaggtcattccactttcctttagaatcctcttcccttggtcaacattggtgcctt 1274

                                                                        
Query: 323  ctagccgaacaacaacagggaccttaagatcaacctgtttagctgcattcactattccac 382
            | | ||||||||||||||| ||||| || ||||||||||| |||||||||||||||||||
Sbjct: 1273 ccaaccgaacaacaacaggcaccttcaggtcaacctgttttgctgcattcactattccac 1214

                                       
Query: 383  ttgctatcacatcacatttcatgatac 409
            |||||||||||||||||||||||||||
Sbjct: 1213 ttgctatcacatcacatttcatgatac 1187
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>dbj|AK103525.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033131K22, full
            insert sequence
          Length = 1726

 Score =  260 bits (131), Expect = 3e-66
 Identities = 188/207 (90%)
 Strand = Plus / Minus

                                                                        
Query: 203  ttaatcatttgaccgatgcttttacagccttctcggcagcatcatcaagatcctctgcag 262
            ||||| ||||||| |||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct: 1393 ttaattatttgacagatgcttttacagctttctcagccgcatcatcaagatcctctgcag 1334

                                                                        
Query: 263  ggatcaatggcattccactttccttaaaaatccttttcccttggtctacattggtgcctt 322
             ||| || | ||||||||||||||| | |||||| ||||||||||| |||||||||||||
Sbjct: 1333 tgattaaggtcattccactttcctttagaatcctcttcccttggtcaacattggtgcctt 1274

                                                                        
Query: 323  ctagccgaacaacaacagggaccttaagatcaacctgtttagctgcattcactattccac 382
            | | ||||||||||||||| ||||| || ||||||||||| |||||||||||||||||||
Sbjct: 1273 ccaaccgaacaacaacaggcaccttcaggtcaacctgttttgctgcattcactattccac 1214

                                       
Query: 383  ttgctatcacatcacatttcatgatac 409
            |||||||||||||||||||||||||||
Sbjct: 1213 ttgctatcacatcacatttcatgatac 1187
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>dbj|AK101006.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023148E03, full
            insert sequence
          Length = 1966

 Score =  260 bits (131), Expect = 3e-66
 Identities = 188/207 (90%)
 Strand = Plus / Minus

                                                                        
Query: 203  ttaatcatttgaccgatgcttttacagccttctcggcagcatcatcaagatcctctgcag 262
            ||||| ||||||| |||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct: 1393 ttaattatttgacagatgcttttacagctttctcagccgcatcatcaagatcctctgcag 1334

                                                                        
Query: 263  ggatcaatggcattccactttccttaaaaatccttttcccttggtctacattggtgcctt 322
             ||| || | ||||||||||||||| | |||||| ||||||||||| |||||||||||||
Sbjct: 1333 tgattaaggtcattccactttcctttagaatcctcttcccttggtcaacattggtgcctt 1274

                                                                        
Query: 323  ctagccgaacaacaacagggaccttaagatcaacctgtttagctgcattcactattccac 382
            | | ||||||||||||||| ||||| || ||||||||||| |||||||||||||||||||
Sbjct: 1273 ccaaccgaacaacaacaggcaccttcaggtcaacctgttttgctgcattcactattccac 1214

                                       
Query: 383  ttgctatcacatcacatttcatgatac 409
            |||||||||||||||||||||||||||
Sbjct: 1213 ttgctatcacatcacatttcatgatac 1187
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  103 bits (52), Expect = 4e-19
 Identities = 55/56 (98%)
 Strand = Plus / Minus

                                                                        
Query: 354      aacctgtttagctgcattcactattccacttgctatcacatcacatttcatgatac 409
                ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24766043 aacctgttttgctgcattcactattccacttgctatcacatcacatttcatgatac 24765988



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 75/84 (89%)
 Strand = Plus / Minus

                                                                            
Query: 203      ttaatcatttgaccgatgcttttacagccttctcggcagcatcatcaagatcctctgcag 262
                ||||| ||||||| |||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct: 24766769 ttaattatttgacagatgcttttacagctttctcagccgcatcatcaagatcctctgcag 24766710

                                        
Query: 263      ggatcaatggcattccactttcct 286
                 ||| || | ||||||||||||||
Sbjct: 24766709 tgattaaggtcattccactttcct 24766686



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Minus

                                                                            
Query: 291      aatccttttcccttggtctacattggtgccttctagccgaacaacaacagggaccttaag 350
                |||||| ||||||||||| |||||||||||||| | ||||||||||||||| ||||| ||
Sbjct: 24766584 aatcctcttcccttggtcaacattggtgccttccaaccgaacaacaacaggcaccttcag 24766525

                         
Query: 351      atcaacctg 359
                 ||||||||
Sbjct: 24766524 gtcaacctg 24766516
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>dbj|AP004053.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1234_B11
          Length = 128095

 Score =  103 bits (52), Expect = 4e-19
 Identities = 55/56 (98%)
 Strand = Plus / Minus

                                                                     
Query: 354   aacctgtttagctgcattcactattccacttgctatcacatcacatttcatgatac 409
             ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65691 aacctgttttgctgcattcactattccacttgctatcacatcacatttcatgatac 65636



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 75/84 (89%)
 Strand = Plus / Minus

                                                                         
Query: 203   ttaatcatttgaccgatgcttttacagccttctcggcagcatcatcaagatcctctgcag 262
             ||||| ||||||| |||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct: 66417 ttaattatttgacagatgcttttacagctttctcagccgcatcatcaagatcctctgcag 66358

                                     
Query: 263   ggatcaatggcattccactttcct 286
              ||| || | ||||||||||||||
Sbjct: 66357 tgattaaggtcattccactttcct 66334



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Minus

                                                                         
Query: 291   aatccttttcccttggtctacattggtgccttctagccgaacaacaacagggaccttaag 350
             |||||| ||||||||||| |||||||||||||| | ||||||||||||||| ||||| ||
Sbjct: 66232 aatcctcttcccttggtcaacattggtgccttccaaccgaacaacaacaggcaccttcag 66173

                      
Query: 351   atcaacctg 359
              ||||||||
Sbjct: 66172 gtcaacctg 66164
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>gb|DQ200398.1| Solanum tuberosum clone 071C05 succinyl-CoA ligase beta subunit-like
            protein mRNA, complete cds
          Length = 1550

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 105/128 (82%)
 Strand = Plus / Minus

                                                                        
Query: 277  ccactttccttaaaaatccttttcccttggtctacattggtgccttctagccgaacaaca 336
            ||||||||||||| ||| || |||||||| || || ||||| ||||| || |||||||  
Sbjct: 1207 ccactttccttaagaattctcttcccttgttcgacgttggttccttccagacgaacaatc 1148

                                                                        
Query: 337  acagggaccttaagatcaacctgtttagctgcattcactattccacttgctatcacatca 396
            ||||| || || || | ||||||||| || ||||| || || ||||| ||||||||||||
Sbjct: 1147 acaggcactttcagttgaacctgtttggcagcattaacaataccactggctatcacatca 1088

                    
Query: 397  catttcat 404
            || |||||
Sbjct: 1087 cacttcat 1080
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>gb|DQ294279.1| Solanum tuberosum clone 180E05 succinyl CoA ligase beta subunit-like
            protein mRNA, complete cds
          Length = 1388

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 105/128 (82%)
 Strand = Plus / Minus

                                                                        
Query: 277  ccactttccttaaaaatccttttcccttggtctacattggtgccttctagccgaacaaca 336
            ||||||||||||| ||| || |||||||| || || ||||| ||||| || |||||||  
Sbjct: 1203 ccactttccttaagaattctcttcccttgttcgacgttggttccttccagacgaacaatc 1144

                                                                        
Query: 337  acagggaccttaagatcaacctgtttagctgcattcactattccacttgctatcacatca 396
            ||||| || || || | ||||||||| || ||||| || || ||||| ||||||||||||
Sbjct: 1143 acaggcactttcagttgaacctgtttggcagcattaacaataccactggctatcacatca 1084

                    
Query: 397  catttcat 404
            || |||||
Sbjct: 1083 cacttcat 1076
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>gb|BT013785.1| Lycopersicon esculentum clone 132678F, mRNA sequence
          Length = 1491

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 104/128 (81%)
 Strand = Plus / Minus

                                                                        
Query: 277  ccactttccttaaaaatccttttcccttggtctacattggtgccttctagccgaacaaca 336
            ||||||||||| | ||| || |||||||| || || ||||| ||||| || |||||||  
Sbjct: 1311 ccactttccttgagaattctcttcccttgttcgacgttggttccttccagacgaacaatc 1252

                                                                        
Query: 337  acagggaccttaagatcaacctgtttagctgcattcactattccacttgctatcacatca 396
            ||||| || || || | |||||| || |||||||| || || ||||| ||||||||||||
Sbjct: 1251 acaggtactttcagttgaacctgcttggctgcattaacaataccactggctatcacatca 1192

                    
Query: 397  catttcat 404
            || |||||
Sbjct: 1191 cacttcat 1184
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>gb|AY180975.1| Lycopersicon esculentum succinyl CoA ligase beta subunit mRNA,
            complete cds; nuclear gene for mitochondrial product
          Length = 1427

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 104/128 (81%)
 Strand = Plus / Minus

                                                                        
Query: 277  ccactttccttaaaaatccttttcccttggtctacattggtgccttctagccgaacaaca 336
            ||||||||||| | ||| || |||||||| || || ||||| ||||| || |||||||  
Sbjct: 1200 ccactttccttgagaattctcttcccttgttcgacgttggttccttccagacgaacaatc 1141

                                                                        
Query: 337  acagggaccttaagatcaacctgtttagctgcattcactattccacttgctatcacatca 396
            ||||| || || || | |||||| || |||||||| || || ||||| ||||||||||||
Sbjct: 1140 acaggtactttcagttgaacctgcttggctgcattaacaataccactggctatcacatca 1081

                    
Query: 397  catttcat 404
            || |||||
Sbjct: 1080 cacttcat 1073
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>ref|NM_127601.2| Arabidopsis thaliana catalytic/ succinate-CoA ligase (GDP-forming)
            AT2G20420 mRNA, complete cds
          Length = 1632

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 370  ttcactattccacttgctatcacatcacatttcat 404
            ||||| |||||||| || |||||||||||||||||
Sbjct: 1221 ttcacgattccactagcaatcacatcacatttcat 1187
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>emb|AJ001808.1|ATSCLBS Arabidopsis thaliana mRNA for Succinyl-CoA-ligase beta subunit
          Length = 1546

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 370  ttcactattccacttgctatcacatcacatttcat 404
            ||||| |||||||| || |||||||||||||||||
Sbjct: 1187 ttcacgattccactagcaatcacatcacatttcat 1153
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>gb|AY128889.1| Arabidopsis thaliana succinyl-CoA ligase beta subunit (At2g20420)
            mRNA, complete cds
          Length = 1333

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 370  ttcactattccacttgctatcacatcacatttcat 404
            ||||| |||||||| || |||||||||||||||||
Sbjct: 1103 ttcacgattccactagcaatcacatcacatttcat 1069
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>gb|AY099707.1| Arabidopsis thaliana succinyl-CoA ligase beta subunit (At2g20420)
            mRNA, complete cds
          Length = 1477

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 370  ttcactattccacttgctatcacatcacatttcat 404
            ||||| |||||||| || |||||||||||||||||
Sbjct: 1187 ttcacgattccactagcaatcacatcacatttcat 1153
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>gb|AC007109.7| Arabidopsis thaliana chromosome 2 clone T13C7 map mi148, complete
            sequence
          Length = 52784

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 370  ttcactattccacttgctatcacatcacatttcat 404
            ||||| |||||||| || |||||||||||||||||
Sbjct: 1066 ttcacgattccactagcaatcacatcacatttcat 1032
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>gb|AC006569.5| Arabidopsis thaliana chromosome 2 clone F11A3 map mi148, complete
            sequence
          Length = 93868

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                               
Query: 370  ttcactattccacttgctatcacatcacatttcat 404
            ||||| |||||||| || |||||||||||||||||
Sbjct: 4157 ttcacgattccactagcaatcacatcacatttcat 4191
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>dbj|AK221149.1| Arabidopsis thaliana mRNA for succinyl-CoA ligase beta subunit,
           partial cds, clone: RAFL22-94-A01
          Length = 802

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 370 ttcactattccacttgctatcacatcacatttcat 404
           ||||| |||||||| || |||||||||||||||||
Sbjct: 470 ttcacgattccactagcaatcacatcacatttcat 436
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>gb|AY087596.1| Arabidopsis thaliana clone 36904 mRNA, complete sequence
          Length = 1511

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 370  ttcactattccacttgctatcacatcacatttcat 404
            ||||| |||||||| || |||||||||||||||||
Sbjct: 1221 ttcacgattccactagcaatcacatcacatttcat 1187
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>emb|AL844600.3| Mouse DNA sequence from clone RP24-92D2 on chromosome 4, complete
              sequence
          Length = 149318

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 64     agtttaaagcaaaactcaaagt 85
              ||||||||||||||||||||||
Sbjct: 122089 agtttaaagcaaaactcaaagt 122110
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>gb|AF332093.1|AF332093 White spot syndrome virus, complete genome
          Length = 305107

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 228    agccttctcggcagcatcatc 248
              |||||||||||||||||||||
Sbjct: 199002 agccttctcggcagcatcatc 199022
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>gb|AC025270.6| Homo sapiens chromosome 15 clone CTD-2165P21 map 15q15, complete
           sequence
          Length = 128484

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 139 gtaagaaagcaccactcctct 159
           |||||||||||||||||||||
Sbjct: 989 gtaagaaagcaccactcctct 969
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>gb|AC009996.7|AC009996 Homo sapiens chromosome 15 clone RP11-151N17 map 15q15, complete
             sequence
          Length = 162495

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 139   gtaagaaagcaccactcctct 159
             |||||||||||||||||||||
Sbjct: 76246 gtaagaaagcaccactcctct 76226
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>gb|AF369029.2| White spot syndrome virus, complete genome
          Length = 292967

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 228    agccttctcggcagcatcatc 248
              |||||||||||||||||||||
Sbjct: 248051 agccttctcggcagcatcatc 248071
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>gb|AF440570.1| Shrimp white spot syndrome virus, complete genome
          Length = 307287

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 228    agccttctcggcagcatcatc 248
              |||||||||||||||||||||
Sbjct: 232610 agccttctcggcagcatcatc 232630
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>gb|AF061021.1|AF061021 Spirogyra sp. SVCK-253 actin mRNA, partial cds
          Length = 1094

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 390 cacatcacatttcatgataca 410
           |||||||||||||||||||||
Sbjct: 831 cacatcacatttcatgataca 811
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>gb|AC162884.4| Mus musculus chromosome 5, clone RP24-169E23, complete sequence
          Length = 158942

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 282   ttccttaaaaatccttttcc 301
             ||||||||||||||||||||
Sbjct: 51552 ttccttaaaaatccttttcc 51533
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>emb|Z72501.1|CEC04C11 Caenorhabditis elegans Cosmid C04C11, complete sequence
          Length = 39757

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 276   tccactttccttaaaaatcctttt 299
             |||||||||||||||| |||||||
Sbjct: 37485 tccactttccttaaaagtcctttt 37508
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>emb|CR769786.9| Zebrafish DNA sequence from clone DKEY-256I5 in linkage group 3,
             complete sequence
          Length = 91701

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 207   tcatttgaccgatgctttta 226
             ||||||||||||||||||||
Sbjct: 14553 tcatttgaccgatgctttta 14534
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>emb|AL512428.13| Human DNA sequence from clone RP11-373L11 on chromosome 6 Contains
            the 3' end of the C6orf32 gene for chromosome 6 open
            reading frame 32 (PL48, DIFF40, DIFF48) and a CpG island,
            complete sequence
          Length = 70800

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 53   caaagatcacaagtttaaag 72
            ||||||||||||||||||||
Sbjct: 5377 caaagatcacaagtttaaag 5358
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>emb|AL034545.2|HS542O23 Human DNA sequence from clone RP4-542O23 on chromosome Xq21.1-21.33,
             complete sequence
          Length = 76277

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 170   aaaacagaactttagactga 189
             ||||||||||||||||||||
Sbjct: 41232 aaaacagaactttagactga 41213
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>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome
          Length = 5057531

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                       
Query: 319     ccttctagccgaacaacaacagggaccttaagatcaacct 358
               |||||||  |||||||||||||| ||||||| | ||||||
Sbjct: 2686654 ccttctaaacgaacaacaacaggaaccttaacaccaacct 2686693
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>gb|AC108497.1| Caenorhabditis briggsae cosmid CB010P02, complete sequence
          Length = 88191

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 285   cttaaaaatccttttccctt 304
             ||||||||||||||||||||
Sbjct: 65420 cttaaaaatccttttccctt 65401
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>gb|AC101685.9| Mus musculus chromosome 5, clone RP23-187K3, complete sequence
          Length = 185522

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 282   ttccttaaaaatccttttcc 301
             ||||||||||||||||||||
Sbjct: 32371 ttccttaaaaatccttttcc 32390
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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 8       ataacagttgctgcccaattttgt 31
               |||| |||||||||||||||||||
Sbjct: 4652362 ataaaagttgctgcccaattttgt 4652339
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>emb|AJ296145.1|FRU296145 Fugu rubripes ghrhr gene for growth hormone releasing hormone-like
             peptide receptor, exons 1-13
          Length = 23157

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 289   aaaatccttttcccttggtc 308
             ||||||||||||||||||||
Sbjct: 19066 aaaatccttttcccttggtc 19047
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>emb|Z79038.1|HSPA21A12 H.sapiens flow-sorted chromosome 6 HindIII fragment, SC6pA21A12
          Length = 377

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 44 ttattaacacaaagatcaca 63
          ||||||||||||||||||||
Sbjct: 40 ttattaacacaaagatcaca 21


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,927,884
Number of Sequences: 3902068
Number of extensions: 3927884
Number of successful extensions: 82419
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82298
Number of HSP's gapped (non-prelim): 121
length of query: 412
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 390
effective length of database: 17,147,199,772
effective search space: 6687407911080
effective search space used: 6687407911080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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