ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart29c03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC169376.2| Sorghum bicolor clone SB_BBc0046M17, complete sequence Length = 127914 Score = 83.8 bits (42), Expect = 5e-13 Identities = 57/62 (91%) Strand = Plus / Minus Query: 438 cgcgcattggggccttggtcgccgaagatgggcagcatgacgagtgggtgcccgaacagg 497 ||||| |||||||||||||||||||||||||||||||||| || |||||||||||| || Sbjct: 86001 cgcgcgttggggccttggtcgccgaagatgggcagcatgatcagcgggtgcccgaactgg 85942 Query: 498 ag 499 || Sbjct: 85941 ag 85940
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 79.8 bits (40), Expect = 8e-12 Identities = 82/96 (85%) Strand = Plus / Plus Query: 396 tccctcgccacctgcaaccccgccaccttcgcctccatttggcgcgcattggggccttgg 455 |||||||||||||||| |||| || | |||||||||| ||||||| |||||||| ||| Sbjct: 23050047 tccctcgccacctgcagccccaccttcctcgcctccatgaggcgcgcgttggggccctgg 23050106 Query: 456 tcgccgaagatgggcagcatgacgagtgggtgcccg 491 |||||| |||||| ||||||||||| |||| |||| Sbjct: 23050107 tcgccggcgatggggagcatgacgagggggttcccg 23050142
>dbj|AK060965.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-B11, full insert sequence Length = 1729 Score = 79.8 bits (40), Expect = 8e-12 Identities = 82/96 (85%) Strand = Plus / Minus Query: 396 tccctcgccacctgcaaccccgccaccttcgcctccatttggcgcgcattggggccttgg 455 |||||||||||||||| |||| || | |||||||||| ||||||| |||||||| ||| Sbjct: 1253 tccctcgccacctgcagccccaccttcctcgcctccatgaggcgcgcgttggggccctgg 1194 Query: 456 tcgccgaagatgggcagcatgacgagtgggtgcccg 491 |||||| |||||| ||||||||||| |||| |||| Sbjct: 1193 tcgccggcgatggggagcatgacgagggggttcccg 1158
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 79.8 bits (40), Expect = 8e-12 Identities = 82/96 (85%) Strand = Plus / Plus Query: 396 tccctcgccacctgcaaccccgccaccttcgcctccatttggcgcgcattggggccttgg 455 |||||||||||||||| |||| || | |||||||||| ||||||| |||||||| ||| Sbjct: 22978238 tccctcgccacctgcagccccaccttcctcgcctccatgaggcgcgcgttggggccctgg 22978297 Query: 456 tcgccgaagatgggcagcatgacgagtgggtgcccg 491 |||||| |||||| ||||||||||| |||| |||| Sbjct: 22978298 tcgccggcgatggggagcatgacgagggggttcccg 22978333
>emb|AL928753.3|CNS08CBQ Oryza sativa chromosome 12, . BAC OSJNBb0076G11 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 135323 Score = 79.8 bits (40), Expect = 8e-12 Identities = 82/96 (85%) Strand = Plus / Minus Query: 396 tccctcgccacctgcaaccccgccaccttcgcctccatttggcgcgcattggggccttgg 455 |||||||||||||||| |||| || | |||||||||| ||||||| |||||||| ||| Sbjct: 128350 tccctcgccacctgcagccccaccttcctcgcctccatgaggcgcgcgttggggccctgg 128291 Query: 456 tcgccgaagatgggcagcatgacgagtgggtgcccg 491 |||||| |||||| ||||||||||| |||| |||| Sbjct: 128290 tcgccggcgatggggagcatgacgagggggttcccg 128255
>dbj|AK121202.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087K24, full insert sequence Length = 1834 Score = 69.9 bits (35), Expect = 8e-09 Identities = 77/91 (84%) Strand = Plus / Minus Query: 396 tccctcgccacctgcaaccccgccaccttcgcctccatttggcgcgcattggggccttgg 455 |||||||||||||||| |||| || | |||||||| | ||||||| |||||||| ||| Sbjct: 1253 tccctcgccacctgcagccccaccttcctcgcctccttgaggcgcgcgttggggccctgg 1194 Query: 456 tcgccgaagatgggcagcatgacgagtgggt 486 |||||| |||||| ||||||||||| |||| Sbjct: 1193 tcgccggcgatggggagcatgacgagggggt 1163
>ref|XM_469427.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2319 Score = 63.9 bits (32), Expect = 5e-07 Identities = 101/124 (81%) Strand = Plus / Minus Query: 372 cggtcgaacgacccatcgctctcgtccctcgccacctgcaaccccgccaccttcgcctcc 431 ||||||||||| ||||||| |||| || ||||||||||| || || ||||||||| Sbjct: 2156 cggtcgaacgatccatcgccgtcgtttcttgccacctgcaatccggcgttcttcgcctcg 2097 Query: 432 atttggcgcgcattggggccttggtcgccgaagatgggcagcatgacgagtgggtgcccg 491 ||| | ||||| || || || |||||||||||||| |||||||||| || ||||| ||| Sbjct: 2096 attagccgcgcgttcggtccctggtcgccgaagatcggcagcatgataagcgggtggccg 2037 Query: 492 aaca 495 |||| Sbjct: 2036 aaca 2033
>gb|AC091670.7| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1212_C08 map R2847, complete sequence Length = 100918 Score = 63.9 bits (32), Expect = 5e-07 Identities = 101/124 (81%) Strand = Plus / Plus Query: 372 cggtcgaacgacccatcgctctcgtccctcgccacctgcaaccccgccaccttcgcctcc 431 ||||||||||| ||||||| |||| || ||||||||||| || || ||||||||| Sbjct: 35005 cggtcgaacgatccatcgccgtcgtttcttgccacctgcaatccggcgttcttcgcctcg 35064 Query: 432 atttggcgcgcattggggccttggtcgccgaagatgggcagcatgacgagtgggtgcccg 491 ||| | ||||| || || || |||||||||||||| |||||||||| || ||||| ||| Sbjct: 35065 attagccgcgcgttcggtccctggtcgccgaagatcggcagcatgataagcgggtggccg 35124 Query: 492 aaca 495 |||| Sbjct: 35125 aaca 35128 Score = 60.0 bits (30), Expect = 7e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 438 cgcgcattggggccttggtcgccgaagatgggcagcatgacgagtgggtgcccgaacagg 497 ||||| || |||||||||||||| ||||| |||||||||| || |||||||||||| || Sbjct: 61723 cgcgcgttcgggccttggtcgcctaagatcggcagcatgatcagcgggtgcccgaactgg 61664 Query: 498 ag 499 || Sbjct: 61663 ag 61662
>gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 genomic sequence, complete sequence Length = 133889 Score = 63.9 bits (32), Expect = 5e-07 Identities = 101/124 (81%) Strand = Plus / Minus Query: 372 cggtcgaacgacccatcgctctcgtccctcgccacctgcaaccccgccaccttcgcctcc 431 ||||||||||| ||||||| |||| || ||||||||||| || || ||||||||| Sbjct: 125749 cggtcgaacgatccatcgccgtcgtttcttgccacctgcaatccggcgttcttcgcctcg 125690 Query: 432 atttggcgcgcattggggccttggtcgccgaagatgggcagcatgacgagtgggtgcccg 491 ||| | ||||| || || || |||||||||||||| |||||||||| || ||||| ||| Sbjct: 125689 attagccgcgcgttcggtccctggtcgccgaagatcggcagcatgataagcgggtggccg 125630 Query: 492 aaca 495 |||| Sbjct: 125629 aaca 125626 Score = 60.0 bits (30), Expect = 7e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 438 cgcgcattggggccttggtcgccgaagatgggcagcatgacgagtgggtgcccgaacagg 497 ||||| || |||||||||||||| ||||| |||||||||| || |||||||||||| || Sbjct: 99031 cgcgcgttcgggccttggtcgcctaagatcggcagcatgatcagcgggtgcccgaactgg 99090 Query: 498 ag 499 || Sbjct: 99091 ag 99092
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 63.9 bits (32), Expect = 5e-07 Identities = 101/124 (81%) Strand = Plus / Plus Query: 372 cggtcgaacgacccatcgctctcgtccctcgccacctgcaaccccgccaccttcgcctcc 431 ||||||||||| ||||||| |||| || ||||||||||| || || ||||||||| Sbjct: 27994167 cggtcgaacgatccatcgccgtcgtttcttgccacctgcaatccggcgttcttcgcctcg 27994226 Query: 432 atttggcgcgcattggggccttggtcgccgaagatgggcagcatgacgagtgggtgcccg 491 ||| | ||||| || || || |||||||||||||| |||||||||| || ||||| ||| Sbjct: 27994227 attagccgcgcgttcggtccctggtcgccgaagatcggcagcatgataagcgggtggccg 27994286 Query: 492 aaca 495 |||| Sbjct: 27994287 aaca 27994290 Score = 60.0 bits (30), Expect = 7e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 438 cgcgcattggggccttggtcgccgaagatgggcagcatgacgagtgggtgcccgaacagg 497 ||||| || |||||||||||||| ||||| |||||||||| || |||||||||||| || Sbjct: 28017319 cgcgcgttcgggccttggtcgcctaagatcggcagcatgatcagcgggtgcccgaactgg 28017260 Query: 498 ag 499 || Sbjct: 28017259 ag 28017258
>dbj|AK121682.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070B15, full insert sequence Length = 1510 Score = 63.9 bits (32), Expect = 5e-07 Identities = 101/124 (81%) Strand = Plus / Minus Query: 372 cggtcgaacgacccatcgctctcgtccctcgccacctgcaaccccgccaccttcgcctcc 431 ||||||||||| ||||||| |||| || ||||||||||| || || ||||||||| Sbjct: 1272 cggtcgaacgatccatcgccgtcgtttcttgccacctgcaatccggcgttcttcgcctcg 1213 Query: 432 atttggcgcgcattggggccttggtcgccgaagatgggcagcatgacgagtgggtgcccg 491 ||| | ||||| || || || |||||||||||||| |||||||||| || ||||| ||| Sbjct: 1212 attagccgcgcgttcggtccctggtcgccgaagatcggcagcatgataagcgggtggccg 1153 Query: 492 aaca 495 |||| Sbjct: 1152 aaca 1149
>dbj|AK119905.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-D10, full insert sequence Length = 1750 Score = 63.9 bits (32), Expect = 5e-07 Identities = 101/124 (81%) Strand = Plus / Minus Query: 372 cggtcgaacgacccatcgctctcgtccctcgccacctgcaaccccgccaccttcgcctcc 431 ||||||||||| ||||||| |||| || ||||||||||| || || ||||||||| Sbjct: 1349 cggtcgaacgatccatcgccgtcgtttcttgccacctgcaatccggcgttcttcgcctcg 1290 Query: 432 atttggcgcgcattggggccttggtcgccgaagatgggcagcatgacgagtgggtgcccg 491 ||| | ||||| || || || |||||||||||||| |||||||||| || ||||| ||| Sbjct: 1289 attagccgcgcgttcggtccctggtcgccgaagatcggcagcatgataagcgggtggccg 1230 Query: 492 aaca 495 |||| Sbjct: 1229 aaca 1226
>dbj|AK105398.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-C05, full insert sequence Length = 1639 Score = 63.9 bits (32), Expect = 5e-07 Identities = 101/124 (81%) Strand = Plus / Minus Query: 372 cggtcgaacgacccatcgctctcgtccctcgccacctgcaaccccgccaccttcgcctcc 431 ||||||||||| ||||||| |||| || ||||||||||| || || ||||||||| Sbjct: 1245 cggtcgaacgatccatcgccgtcgtttcttgccacctgcaatccggcgttcttcgcctcg 1186 Query: 432 atttggcgcgcattggggccttggtcgccgaagatgggcagcatgacgagtgggtgcccg 491 ||| | ||||| || || || |||||||||||||| |||||||||| || ||||| ||| Sbjct: 1185 attagccgcgcgttcggtccctggtcgccgaagatcggcagcatgataagcgggtggccg 1126 Query: 492 aaca 495 |||| Sbjct: 1125 aaca 1122
>dbj|AK063307.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-F11, full insert sequence Length = 1689 Score = 63.9 bits (32), Expect = 5e-07 Identities = 101/124 (81%) Strand = Plus / Plus Query: 372 cggtcgaacgacccatcgctctcgtccctcgccacctgcaaccccgccaccttcgcctcc 431 ||||||||||| ||||||| |||| || ||||||||||| || || ||||||||| Sbjct: 177 cggtcgaacgatccatcgccgtcgtttcttgccacctgcaatccggcgttcttcgcctcg 236 Query: 432 atttggcgcgcattggggccttggtcgccgaagatgggcagcatgacgagtgggtgcccg 491 ||| | ||||| || || || |||||||||||||| |||||||||| || ||||| ||| Sbjct: 237 attagccgcgcgttcggtccctggtcgccgaagatcggcagcatgataagcgggtggccg 296 Query: 492 aaca 495 |||| Sbjct: 297 aaca 300
>ref|NM_194659.1| Oryza sativa (japonica cultivar-group) putative anthocyanidin-3-glucoside rhamnosyltransferase (OSJNBa0049K09.17), mRNA Length = 1479 Score = 60.0 bits (30), Expect = 7e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 336 accatgactgcccggaccgcgctcgcgatgccatggcggtcgaacgaccc 385 |||||||| |||||||||||| |||| ||||||||||||||||||||| Sbjct: 1307 accatgacggcccggaccgcggctgcgacgccatggcggtcgaacgaccc 1258
>ref|XM_469430.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1584 Score = 60.0 bits (30), Expect = 7e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 438 cgcgcattggggccttggtcgccgaagatgggcagcatgacgagtgggtgcccgaacagg 497 ||||| || |||||||||||||| ||||| |||||||||| || |||||||||||| || Sbjct: 1219 cgcgcgttcgggccttggtcgcctaagatcggcagcatgatcagcgggtgcccgaactgg 1160 Query: 498 ag 499 || Sbjct: 1159 ag 1158
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 60.0 bits (30), Expect = 7e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 438 cgcgcattggggccttggtcgccgaagatgggcagcatgacgagtgggtgcccgaacagg 497 ||||| || |||||||||||||| ||||| |||||||||| || |||||||||||| || Sbjct: 27925995 cgcgcgttcgggccttggtcgcctaagatcggcagcatgatcagcgggtgcccgaactgg 27925936 Query: 498 ag 499 || Sbjct: 27925935 ag 27925934
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 60.0 bits (30), Expect = 7e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 336 accatgactgcccggaccgcgctcgcgatgccatggcggtcgaacgaccc 385 |||||||| |||||||||||| |||| ||||||||||||||||||||| Sbjct: 1386043 accatgacggcccggaccgcggctgcgacgccatggcggtcgaacgaccc 1385994
>gb|AC074282.4| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0049K09, complete sequence Length = 146576 Score = 60.0 bits (30), Expect = 7e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 336 accatgactgcccggaccgcgctcgcgatgccatggcggtcgaacgaccc 385 |||||||| |||||||||||| |||| ||||||||||||||||||||| Sbjct: 85373 accatgacggcccggaccgcggctgcgacgccatggcggtcgaacgaccc 85324
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 60.0 bits (30), Expect = 7e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 336 accatgactgcccggaccgcgctcgcgatgccatggcggtcgaacgaccc 385 |||||||| |||||||||||| |||| ||||||||||||||||||||| Sbjct: 1386043 accatgacggcccggaccgcggctgcgacgccatggcggtcgaacgaccc 1385994
>dbj|AK108055.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-H10, full insert sequence Length = 1706 Score = 60.0 bits (30), Expect = 7e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 438 cgcgcattggggccttggtcgccgaagatgggcagcatgacgagtgggtgcccgaacagg 497 ||||| || |||||||||||||| ||||| |||||||||| || |||||||||||| || Sbjct: 216 cgcgcgttcgggccttggtcgcctaagatcggcagcatgatcagcgggtgcccgaactgg 275 Query: 498 ag 499 || Sbjct: 276 ag 277
>dbj|AK064270.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-E07, full insert sequence Length = 1586 Score = 60.0 bits (30), Expect = 7e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 438 cgcgcattggggccttggtcgccgaagatgggcagcatgacgagtgggtgcccgaacagg 497 ||||| || |||||||||||||| ||||| |||||||||| || |||||||||||| || Sbjct: 1221 cgcgcgttcgggccttggtcgcctaagatcggcagcatgatcagcgggtgcccgaactgg 1162 Query: 498 ag 499 || Sbjct: 1161 ag 1160
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 60.0 bits (30), Expect = 7e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 336 accatgactgcccggaccgcgctcgcgatgccatggcggtcgaacgaccc 385 |||||||| |||||||||||| |||| ||||||||||||||||||||| Sbjct: 1386040 accatgacggcccggaccgcggctgcgacgccatggcggtcgaacgaccc 1385991
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 333 tcaaccatgactgcccggaccgcgctcgcgatgccatggcggtcgaacgaccc 385 ||||||||||| |||||||||||| |||| ||||||||||||||| ||||| Sbjct: 5919075 tcaaccatgacggcccggaccgcggcggcgacgccatggcggtcgaatgaccc 5919127 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Plus Query: 450 ccttggtcgccgaagatgggcagcatgacgagtgggtgcccgaacag 496 |||||||| ||||||||||||| ||||| ||| |||| ||| ||||| Sbjct: 5919192 ccttggtccccgaagatgggcaacatgatgagagggttcccaaacag 5919238
>dbj|AP004741.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0024N18 Length = 128739 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 333 tcaaccatgactgcccggaccgcgctcgcgatgccatggcggtcgaacgaccc 385 ||||||||||| |||||||||||| |||| ||||||||||||||| ||||| Sbjct: 40727 tcaaccatgacggcccggaccgcggcggcgacgccatggcggtcgaatgaccc 40779 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Plus Query: 450 ccttggtcgccgaagatgggcagcatgacgagtgggtgcccgaacag 496 |||||||| ||||||||||||| ||||| ||| |||| ||| ||||| Sbjct: 40844 ccttggtccccgaagatgggcaacatgatgagagggttcccaaacag 40890
>dbj|AP003525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0537F07 Length = 147724 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 333 tcaaccatgactgcccggaccgcgctcgcgatgccatggcggtcgaacgaccc 385 ||||||||||| |||||||||||| |||| ||||||||||||||| ||||| Sbjct: 119850 tcaaccatgacggcccggaccgcggcggcgacgccatggcggtcgaatgaccc 119902 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Plus Query: 450 ccttggtcgccgaagatgggcagcatgacgagtgggtgcccgaacag 496 |||||||| ||||||||||||| ||||| ||| |||| ||| ||||| Sbjct: 119967 ccttggtccccgaagatgggcaacatgatgagagggttcccaaacag 120013
>emb|AJ304792.1|HVU304792 Hordeum vulgare bpao1 gene for flavin containing polyamine oxidase, exons 1-9 Length = 2942 Score = 50.1 bits (25), Expect = 0.007 Identities = 47/53 (88%), Gaps = 1/53 (1%) Strand = Plus / Minus Query: 3 tttgaaaggttaaataaatctttgtaagttttttgtaggactagcattattgc 55 ||||||||||||| |||| |||| |||| |||| ||||| ||||||||||||| Sbjct: 147 tttgaaaggttaagtaaacctttataag-ttttcgtaggtctagcattattgc 96
>gb|AC115718.14| Mus musculus chromosome 8, clone RP23-247P3, complete sequence Length = 232751 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 68 ttgagtatcaaacacagaatgt 89 |||||||||||||||||||||| Sbjct: 10227 ttgagtatcaaacacagaatgt 10206
>gb|AC121275.20| Mus musculus chromosome 8, clone RP24-234C3, complete sequence Length = 158075 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 68 ttgagtatcaaacacagaatgt 89 |||||||||||||||||||||| Sbjct: 92798 ttgagtatcaaacacagaatgt 92819
>gb|AC144487.1| Gasterosteus aculeatus clone CH213-160O9, complete sequence Length = 181162 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 4 ttgaaaggttaaataaatcttt 25 |||||||||||||||||||||| Sbjct: 32895 ttgaaaggttaaataaatcttt 32916
>gb|AC004828.2|AC004828 Homo sapiens clone DJ0514A23, complete sequence Length = 183249 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 18 aaatctttgtaagttttttgta 39 |||||||||||||||||||||| Sbjct: 24113 aaatctttgtaagttttttgta 24092
>emb|AL392024.3|CNS06C8K Human chromosome 14 DNA sequence BAC R-182E21 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 146235 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 18 aaatctttgtaagttttttgta 39 |||||||||||||||||||||| Sbjct: 87174 aaatctttgtaagttttttgta 87195
>gb|BC060539.1| Rattus norvegicus castration induced prostatic apoptosis-related protein 1, mRNA (cDNA clone MGC:72661 IMAGE:6890269), complete cds Length = 1216 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 282 accctctgcatcttcgccgca 302 ||||||||||||||||||||| Sbjct: 227 accctctgcatcttcgccgca 247
>gb|AC154319.2| Mus musculus BAC clone RP23-331I13 from chromosome 9, complete sequence Length = 196331 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 19 aatctttgtaagttttttgta 39 ||||||||||||||||||||| Sbjct: 129605 aatctttgtaagttttttgta 129625
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 372 cggtcgaacgacccatcgctctcgtccct 400 ||||||||||| || |||||||||||||| Sbjct: 34295286 cggtcgaacgagccgtcgctctcgtccct 34295258
>dbj|AP005056.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0689B12 Length = 154745 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 372 cggtcgaacgacccatcgctctcgtccct 400 ||||||||||| || |||||||||||||| Sbjct: 130559 cggtcgaacgagccgtcgctctcgtccct 130531
>dbj|AK109780.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-147-B12, full insert sequence Length = 1580 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 372 cggtcgaacgacccatcgctctcgtccct 400 ||||||||||| || |||||||||||||| Sbjct: 160 cggtcgaacgagccgtcgctctcgtccct 188
>dbj|AK106930.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-C02, full insert sequence Length = 1823 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 372 cggtcgaacgacccatcgctctcgtccct 400 ||||||||||| || |||||||||||||| Sbjct: 1292 cggtcgaacgagccgtcgctctcgtccct 1264
>gb|AC153373.4| Mus musculus 6 BAC RP23-100J14 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 218409 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 3 tttgaaaggttaaataaatctttgt 27 ||||||||||||||||||| ||||| Sbjct: 108041 tttgaaaggttaaataaatgtttgt 108065
>gb|AY459533.1| Lactobacillus johnsonii prophage Lj928, complete genome Length = 38384 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 gtttgaaaggttaaataaat 21 |||||||||||||||||||| Sbjct: 20020 gtttgaaaggttaaataaat 20039
>emb|CR925784.13| Zebrafish DNA sequence from clone DKEYP-104A3 in linkage group 11, complete sequence Length = 174101 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 atctttgtaagttttttgta 39 |||||||||||||||||||| Sbjct: 90286 atctttgtaagttttttgta 90305
>emb|AL513285.10| Human DNA sequence from clone RP11-99H8 on chromosome 1 Contains a novel gene and the 5' end of a novel gene, complete sequence Length = 97978 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 3 tttgaaaggttaaataaatctttg 26 ||||||||||||||||||| |||| Sbjct: 43984 tttgaaaggttaaataaatttttg 44007
>emb|AL450337.24| Human DNA sequence from clone RP11-51B10 on chromosome 10 Contains the 5' end of the PARD3 gene for par-3 partitioning defective 3 homolog (C.elegans), a novel gene, a pseudogene similar to part of synovial sarcoma translocation, chromosome 18 protein (SS18), a peroxiredoxin 2 (PRDX2) pseudogene and a CpG island, complete sequence Length = 173987 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 ttcagctggttgtgggggcg 179 |||||||||||||||||||| Sbjct: 152729 ttcagctggttgtgggggcg 152748
>emb|BX640449.1| Bordetella bronchiseptica strain RB50, complete genome; segment 13/16 Length = 348074 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 209 tgcggcgccgtgagatcgaagccg 232 ||||||| |||||||||||||||| Sbjct: 121452 tgcggcggcgtgagatcgaagccg 121429
>emb|BX640420.1| Bordetella pertussis strain Tohama I, complete genome; segment 10/12 Length = 348134 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 209 tgcggcgccgtgagatcgaagccg 232 ||||||| |||||||||||||||| Sbjct: 340223 tgcggcggcgtgagatcgaagccg 340200
>emb|X63693.1|HSIGEHCA H.sapiens germline alternatively spliced IgE heavy chain (L2 H2) DNA Length = 1129 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 cctctgcatcttcgccgcac 303 |||||||||||||||||||| Sbjct: 238 cctctgcatcttcgccgcac 257
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 gctggttgtgggggcgacgg 183 |||||||||||||||||||| Sbjct: 2970586 gctggttgtgggggcgacgg 2970605
>ref|XM_940414.1| PREDICTED: Homo sapiens similar to Ig gamma-2B chain C region, membrane-bound form (LOC651286), mRNA Length = 444 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 cctctgcatcttcgccgcac 303 |||||||||||||||||||| Sbjct: 294 cctctgcatcttcgccgcac 313
>gb|S55277.1| immunoglobulin epsilon chain membrane-bound form {3' region, C4 non-coding region, M:D, alternatively spliced, membrane domain exon 1} [human, B cell myeloma U-266, mRNA Partial, 357 nt] Length = 357 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 cctctgcatcttcgccgcac 303 |||||||||||||||||||| Sbjct: 319 cctctgcatcttcgccgcac 338
>gb|S55271.1| immunoglobulin epsilon chain constant region=membrane-bound form {M:A, alternatively spliced, exon C4, membrane domain exon 1} [human, B cell myeloma U-266, mRNA Partial, 230 nt] Length = 230 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 cctctgcatcttcgccgcac 303 |||||||||||||||||||| Sbjct: 192 cctctgcatcttcgccgcac 211
>gb|S53497.1| immunoglobulin epsilon chain constant region=secreted form {3' region} [human, B cell myeloma U-266, Genomic, 3198 nt] Length = 3198 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 cctctgcatcttcgccgcac 303 |||||||||||||||||||| Sbjct: 2223 cctctgcatcttcgccgcac 2242
>gb|S71428.1|S71424S2 epsilon , IgE=IgE epsilon chain {alternative splicing} [human, Genomic, 953 nt, segment 2 of 2] Length = 953 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 cctctgcatcttcgccgcac 303 |||||||||||||||||||| Sbjct: 265 cctctgcatcttcgccgcac 284
>gb|S71435.1| epsilon , IgE=membrane-bound IgE, epsilon m/s isoform {alternative splicing} [human, mRNA Partial, 216 nt] Length = 216 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 cctctgcatcttcgccgcac 303 |||||||||||||||||||| Sbjct: 66 cctctgcatcttcgccgcac 85
>ref|NM_173114.1| Rattus norvegicus castration induced prostatic apoptosis-related protein 1 (Cipar1), mRNA Length = 1178 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 accctctgcatcttcgccgc 301 |||||||||||||||||||| Sbjct: 201 accctctgcatcttcgccgc 220
>emb|AL928742.3|CNS08CBF Human chromosome 14 DNA sequence BAC R-731F5 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 176237 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 cctctgcatcttcgccgcac 303 |||||||||||||||||||| Sbjct: 59777 cctctgcatcttcgccgcac 59796
>gb|AC148877.2| Chlamydomonas reinhardtii clone cr-11B1, complete sequence Length = 52591 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 ccacctgcaaccccgccacc 422 |||||||||||||||||||| Sbjct: 20790 ccacctgcaaccccgccacc 20771
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 345 gcccggaccgcgctcgcgat 364 |||||||||||||||||||| Sbjct: 3524895 gcccggaccgcgctcgcgat 3524876
>emb|AJ010750.1|RNO010750 Rattus norvegicus mRNA for Castration Induced Prostatic Apoptosis Related protein-1 (CIPAR-1) Length = 1200 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 accctctgcatcttcgccgc 301 |||||||||||||||||||| Sbjct: 223 accctctgcatcttcgccgc 242
>ref|NG_001019.4| Homo sapiens immunoglobulin heavy locus (IGH@) on chromosome 14 Length = 1279711 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 cctctgcatcttcgccgcac 303 |||||||||||||||||||| Sbjct: 1225278 cctctgcatcttcgccgcac 1225297 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 cctctgcatcttcgccgcac 303 |||||||||||||||||||| Sbjct: 1103548 cctctgcatcttcgccgcac 1103567
>gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome Length = 1992676 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 gtttgaaaggttaaataaat 21 |||||||||||||||||||| Sbjct: 1310448 gtttgaaaggttaaataaat 1310429
>gb|M55420.1|HUMIGHE Human IgE chain, last 2 exons Length = 972 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 cctctgcatcttcgccgcac 303 |||||||||||||||||||| Sbjct: 455 cctctgcatcttcgccgcac 474
>dbj|AB020790.1| Abies homolepis chloroplast DNA, trnS, psaM and trnG genes region Length = 2681 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 2 gtttgaaaggttaaataaatcttt 25 ||||||||||||| |||||||||| Sbjct: 1844 gtttgaaaggttagataaatcttt 1867
>dbj|AB020786.1| Abies firma chloroplast DNA, trnS, psaM and trnG genes region Length = 2687 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 2 gtttgaaaggttaaataaatcttt 25 ||||||||||||| |||||||||| Sbjct: 1844 gtttgaaaggttagataaatcttt 1867
>emb|AL901608.1|CNS08CBC Human chromosome 14 DNA sequence Partial sequence from BAC C-2194O15_PCR1 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 38314 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 cctctgcatcttcgccgcac 303 |||||||||||||||||||| Sbjct: 23479 cctctgcatcttcgccgcac 23498 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,080,156 Number of Sequences: 3902068 Number of extensions: 3080156 Number of successful extensions: 60417 Number of sequences better than 10.0: 64 Number of HSP's better than 10.0 without gapping: 64 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60126 Number of HSP's gapped (non-prelim): 290 length of query: 499 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 477 effective length of database: 17,147,199,772 effective search space: 8179214291244 effective search space used: 8179214291244 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
