>CY561_SHEEP (Q95204) Cytochrome b561 (Cytochrome b-561)|
          Length = 252

 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 21/58 (36%), Positives = 32/58 (55%)
 Frame = -1

Query: 474 FPGAAPDVRRGALPWHALFGLFVYVLTLATAELGFLEKMTFLQSSGLDKYGPEALLDN 301
           FPGA+  +R    P H  FG  +++L++ATA LG  E + F   +    + PE +L N
Sbjct: 146 FPGASFSLRSRYRPQHVFFGAAIFLLSVATALLGLKEALLFELGTKYSTFEPEGVLAN 203

>CY561_BOVIN (P10897) Cytochrome b561 (Cytochrome b-561)|
          Length = 252

 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 21/58 (36%), Positives = 32/58 (55%)
 Frame = -1

Query: 474 FPGAAPDVRRGALPWHALFGLFVYVLTLATAELGFLEKMTFLQSSGLDKYGPEALLDN 301
           FPGA+  +R    P H  FG  +++L++ATA LG  E + F   +    + PE +L N
Sbjct: 146 FPGASFSLRSRYRPQHVFFGAAIFLLSVATALLGLKEALLFELGTKYSMFEPEGVLAN 203

>CY561_MOUSE (Q60720) Cytochrome b561 (Cytochrome b-561)|
          Length = 250

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 20/58 (34%), Positives = 30/58 (51%)
 Frame = -1

Query: 474 FPGAAPDVRRGALPWHALFGLFVYVLTLATAELGFLEKMTFLQSSGLDKYGPEALLDN 301
           FPGA+  +R    P H  FG  +++ ++ TA LG  E + F   S    + PE +L N
Sbjct: 144 FPGASFSLRSRYRPQHIFFGATIFLFSVGTALLGLKEALLFKLGSKYSTFEPEGVLAN 201

>CY561_PONPY (Q5RCZ2) Cytochrome b561 (Cytochrome b-561)|
          Length = 251

 Score = 39.7 bits (91), Expect = 0.004
 Identities = 20/58 (34%), Positives = 30/58 (51%)
 Frame = -1

Query: 474 FPGAAPDVRRGALPWHALFGLFVYVLTLATAELGFLEKMTFLQSSGLDKYGPEALLDN 301
           FPGA+  +R    P H  FG  +++L++ TA LG  E + F        + PE +L N
Sbjct: 145 FPGASFSLRSRYRPQHIFFGATIFLLSVGTALLGLKEALLFKLRDKYSAFEPEGVLAN 202

>CY561_HUMAN (P49447) Cytochrome b561 (Cytochrome b-561)|
          Length = 251

 Score = 39.7 bits (91), Expect = 0.004
 Identities = 20/58 (34%), Positives = 30/58 (51%)
 Frame = -1

Query: 474 FPGAAPDVRRGALPWHALFGLFVYVLTLATAELGFLEKMTFLQSSGLDKYGPEALLDN 301
           FPGA+  +R    P H  FG  +++L++ TA LG  E + F        + PE +L N
Sbjct: 145 FPGASFSLRSRYRPQHIFFGATIFLLSVGTALLGLKEALLFNLGGKYSAFEPEGVLAN 202

>CY561_PIG (Q95245) Cytochrome b561 (Cytochrome b-561)|
          Length = 252

 Score = 37.7 bits (86), Expect = 0.015
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = -1

Query: 474 FPGAAPDVRRGALPWHALFGLFVYVLTLATAELGFLEKMTFLQSSGLDKYGPEALLDN 301
           FPGA+  +R    P H  FG  +++L++ TA LG  E + F   +    +  E +L N
Sbjct: 146 FPGASFSLRSRYRPQHVFFGAAIFLLSVGTALLGLKEALLFQLGTKYSAFESEGVLAN 203

>CY561_CAEEL (P34465) Putative cytochrome b561 (Cytochrome b-561)|
          Length = 266

 Score = 35.0 bits (79), Expect = 0.10
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -1

Query: 477 FFPGAAPDVRRGALPWHALFGLFVYVLTLATAELGFLEK 361
           FFPG    +R+  +P+H +FG+ +++    T  +G  E+
Sbjct: 162 FFPGMPIPIRQLVMPFHQMFGVLIFIFVSITVAMGISER 200

>CY561_XENLA (Q91577) Cytochrome b561 (Cytochrome b-561)|
          Length = 247

 Score = 32.3 bits (72), Expect = 0.65
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -1

Query: 477 FFPGAAPDVRRGALPWHALFGLFVYVLTLATAELGFLEKM 358
           F PG A   R    P H  FG  +++ ++AT+ LG  EKM
Sbjct: 144 FIPGVAFTYRSQFKPLHEFFGRALFLSSIATSLLGLTEKM 183

>STA5A_SHEEP (P42231) Signal transducer and activator of transcription 5A|
           (Mammary gland factor)
          Length = 794

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 41  RTVQLIHTNQT*ILCSPPISWNQSHTWSLLEQTRRS 148
           +T+QL+   QT IL    I W + H W  +E   RS
Sbjct: 236 KTLQLLRKQQTIILDDELIQWKRRHDWRGMEAPPRS 271

>CBIO1_MYCMS (Q6MSQ2) Cobalt import ATP-binding protein cbiO 1|
          Length = 303

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = -2

Query: 137 FVPRETTCVIGSTRSGVST--EFTSGLCVS 54
           F   + TCVIG+T SG ST  + T+GL +S
Sbjct: 48  FKKNKVTCVIGTTGSGKSTMIQLTNGLIIS 77

>CCPR_YARLI (Q6C0Z6) Cytochrome c peroxidase, mitochondrial precursor (EC|
           1.11.1.5) (CCP)
          Length = 340

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 91  PDLVEPITHVVSLGTNQTFNNQQHVALYGTRLL 189
           PD  +  THV ++   Q FN+Q+ VAL G   L
Sbjct: 194 PDASQGATHVRNVFNRQGFNDQEMVALIGAHAL 226

>CDR4_CANAL (O74676) ABC transporter CDR4|
          Length = 1490

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 450  RRGALPWHALFGLFVYVLTLATAELGFLE 364
            +RGA  W A+   F+Y  TLA   + FLE
Sbjct: 1300 QRGAFMWFAIVLFFIYTSTLAQLCISFLE 1328

>ENV_HV2RO (P04577) Envelope polyprotein GP160 precursor [Contains: Exterior|
           membrane glycoprotein (GP120); Transmembrane
           glycoprotein (GP41)]
          Length = 858

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 63  QTRREFCAHPRSRGTNHTRGLSWNKP 140
           + +     HPR RGTN TR +S+  P
Sbjct: 352 EVKETLAKHPRYRGTNDTRNISFAAP 377

>PALF_ASHGO (Q754G2) pH-response regulator protein palF/RIM8|
          Length = 548

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 49  PADTHKPDVNSVLTPDLVEPITHVVSLGTN 138
           P +T + D+   + P  VEP TH  S+G N
Sbjct: 290 PMETFRKDICQCVAPLYVEPETHTCSVGMN 319

>CBIO2_MESFL (Q6F1W4) Cobalt import ATP-binding protein cbiO 2|
          Length = 315

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
 Frame = -2

Query: 128 RETTCVIGSTRSGVST--EFTSGLCVS 54
           ++ TCVIG+T SG ST  + T+GL +S
Sbjct: 61  KKITCVIGTTGSGKSTMIQLTNGLLIS 87

>CBIO2_SPIKU (Q6XYZ3) Cobalt import ATP-binding protein cbiO 2|
          Length = 305

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -2

Query: 188 SSLVPYRATCC*LLNVWFVPRETTCVIGSTRSGVST 81
           S   PY  T    +NV   P + T +IGST SG ST
Sbjct: 28  SPKTPYEYTSLQDINVVIKPGKITAIIGSTGSGKST 63


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,363,776
Number of Sequences: 219361
Number of extensions: 865744
Number of successful extensions: 2559
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2559
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)