ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart29b11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473298.1| Oryza sativa (japonica cultivar-group), predic... 264 2e-67
2emb|AL663006.3|OSJN00204 Oryza sativa genomic DNA, chromosome 4,... 264 2e-67
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 264 2e-67
4dbj|AK069219.1| Oryza sativa (japonica cultivar-group) cDNA clon... 264 2e-67
5dbj|AK061426.1| Oryza sativa (japonica cultivar-group) cDNA clon... 264 2e-67
6gb|AY110878.1| Zea mays CL16535_1 mRNA sequence 147 4e-32
7ref|NM_197235.1| Oryza sativa (japonica cultivar-group) putative... 50 0.007
8gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome... 50 0.007
9gb|AC011676.10| Homo sapiens chromosome , clone RP11-10J21, comp... 50 0.007
10gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 geno... 50 0.007
11dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.007
12dbj|AK111107.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.007
13gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 50 0.007
14gb|U39743.2| Caenorhabditis elegans cosmid R173, complete sequence 42 1.6
15gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 42 1.6
16dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
17dbj|AK072326.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
18gb|AC169088.2| Gallus gallus BAC clone CH261-100B3 from chromoso... 42 1.6
19gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
20emb|AL772419.4|CNS08C9X Oryza sativa chromosome 12, . BAC OJ1115... 42 1.6
21ref|XM_478588.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.4
22gb|AF268389.1| Salmonella enteritidis plasmid pJ Rep (rep) gene,... 40 6.4
23gb|AC145510.2| Gasterosteus aculeatus clone CH213-60G7, complete... 40 6.4
24ref|XM_765795.1| Giardia lamblia ATCC 50803 hypothetical protein... 40 6.4
25ref|XM_765796.1| Giardia lamblia ATCC 50803 phosphate dikinase (... 40 6.4
26gb|AC145764.2| Gasterosteus aculeatus clone CH213-118A19, comple... 40 6.4
27emb|Z54168.1|GDPPDKGN G.duodenalis gene for pyruvate phosphate d... 40 6.4
28gb|CP000088.1| Thermobifida fusca YX, complete genome 40 6.4
29emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 6.4
30emb|AJ278573.1|SNA278573 Streptomyces natalensis pimaricin biosy... 40 6.4
31emb|AJ132222.1|SNA132222 Streptomyces natalensis pimS1 gene 40 6.4
32dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, compl... 40 6.4
33gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome 40 6.4
34dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
35gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 40 6.4
36gb|AF096871.1|AF096871 Zea mays calcium ATPase (cap1) mRNA, comp... 40 6.4
37dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 6.4
38dbj|AP003736.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
39dbj|AP005786.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
40dbj|AK100722.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.4
41emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromo... 40 6.4
42emb|AL929464.9| Zebrafish DNA sequence from clone CH211-255L14 i... 40 6.4
43gb|AC026351.29| Homo sapiens 12 BAC RP11-176O5 (Roswell Park Can... 40 6.4
44gb|BC083571.1| Rattus norvegicus progesterone receptor membrane ... 40 6.4
45gb|U43531.1|GLU43531 Giardia intestinalis pyruvate,phosphate dik... 40 6.4
46ref|NM_001008374.1| Rattus norvegicus progesterone receptor memb... 40 6.4
47emb|CT005238.2| Methylocapsa acidiphila B2, overlapping BAC clon... 40 6.4 
>ref|XM_473298.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 711

 Score =  264 bits (133), Expect = 2e-67
 Identities = 208/233 (89%)
 Strand = Plus / Minus

                                                                       
Query: 245 gcgacggcagcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttg 304
           |||||||| || ||||| |||||||||||||  ||| | ||||| ||  |||||||||| 
Sbjct: 659 gcgacggcggccacgacgacggcggcgccgaacagcgcgacgaccagccccgtgaagttc 600

                                                                       
Query: 305 tccaggagcgcctccgggccgtacttgtcgagcccggagctctgcaggaaggtcatcttc 364
            |||||| |||||||| ||||||||||||||| ||||||||||| |||||||||| ||||
Sbjct: 599 accaggaacgcctccgcgccgtacttgtcgaggccggagctctggaggaaggtcagcttc 540

                                                                       
Query: 365 tccaggaacccgagctccgccgtcgccagcgtgagcacgtagacgaagagcccgaacagc 424
           ||||||| |||||||||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct: 539 tccaggagcccgagctccgccgtcgccagcgtcaggacgtagacgaacagcccgaacagc 480

                                                                
Query: 425 gcgtgccacggcagagccccgcgcctcacgtccggcgccgcgccggggaagaa 477
            ||||||||||||| |||||||||||||||| |||||||||||||||| ||||
Sbjct: 479 acgtgccacggcagcgccccgcgcctcacgtgcggcgccgcgccggggtagaa 427
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>emb|AL663006.3|OSJN00204 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0039L24,
             complete sequence
          Length = 121056

 Score =  264 bits (133), Expect = 2e-67
 Identities = 208/233 (89%)
 Strand = Plus / Plus

                                                                         
Query: 245   gcgacggcagcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttg 304
             |||||||| || ||||| |||||||||||||  ||| | ||||| ||  |||||||||| 
Sbjct: 87576 gcgacggcggccacgacgacggcggcgccgaacagcgcgacgaccagccccgtgaagttc 87635

                                                                         
Query: 305   tccaggagcgcctccgggccgtacttgtcgagcccggagctctgcaggaaggtcatcttc 364
              |||||| |||||||| ||||||||||||||| ||||||||||| |||||||||| ||||
Sbjct: 87636 accaggaacgcctccgcgccgtacttgtcgaggccggagctctggaggaaggtcagcttc 87695

                                                                         
Query: 365   tccaggaacccgagctccgccgtcgccagcgtgagcacgtagacgaagagcccgaacagc 424
             ||||||| |||||||||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct: 87696 tccaggagcccgagctccgccgtcgccagcgtcaggacgtagacgaacagcccgaacagc 87755

                                                                  
Query: 425   gcgtgccacggcagagccccgcgcctcacgtccggcgccgcgccggggaagaa 477
              ||||||||||||| |||||||||||||||| |||||||||||||||| ||||
Sbjct: 87756 acgtgccacggcagcgccccgcgcctcacgtgcggcgccgcgccggggtagaa 87808
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  264 bits (133), Expect = 2e-67
 Identities = 208/233 (89%)
 Strand = Plus / Plus

                                                                            
Query: 245      gcgacggcagcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttg 304
                |||||||| || ||||| |||||||||||||  ||| | ||||| ||  |||||||||| 
Sbjct: 26648018 gcgacggcggccacgacgacggcggcgccgaacagcgcgacgaccagccccgtgaagttc 26648077

                                                                            
Query: 305      tccaggagcgcctccgggccgtacttgtcgagcccggagctctgcaggaaggtcatcttc 364
                 |||||| |||||||| ||||||||||||||| ||||||||||| |||||||||| ||||
Sbjct: 26648078 accaggaacgcctccgcgccgtacttgtcgaggccggagctctggaggaaggtcagcttc 26648137

                                                                            
Query: 365      tccaggaacccgagctccgccgtcgccagcgtgagcacgtagacgaagagcccgaacagc 424
                ||||||| |||||||||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct: 26648138 tccaggagcccgagctccgccgtcgccagcgtcaggacgtagacgaacagcccgaacagc 26648197

                                                                     
Query: 425      gcgtgccacggcagagccccgcgcctcacgtccggcgccgcgccggggaagaa 477
                 ||||||||||||| |||||||||||||||| |||||||||||||||| ||||
Sbjct: 26648198 acgtgccacggcagcgccccgcgcctcacgtgcggcgccgcgccggggtagaa 26648250
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>dbj|AK069219.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012J01, full
           insert sequence
          Length = 1046

 Score =  264 bits (133), Expect = 2e-67
 Identities = 208/233 (89%)
 Strand = Plus / Minus

                                                                       
Query: 245 gcgacggcagcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttg 304
           |||||||| || ||||| |||||||||||||  ||| | ||||| ||  |||||||||| 
Sbjct: 842 gcgacggcggccacgacgacggcggcgccgaacagcgcgacgaccagccccgtgaagttc 783

                                                                       
Query: 305 tccaggagcgcctccgggccgtacttgtcgagcccggagctctgcaggaaggtcatcttc 364
            |||||| |||||||| ||||||||||||||| ||||||||||| |||||||||| ||||
Sbjct: 782 accaggaacgcctccgcgccgtacttgtcgaggccggagctctggaggaaggtcagcttc 723

                                                                       
Query: 365 tccaggaacccgagctccgccgtcgccagcgtgagcacgtagacgaagagcccgaacagc 424
           ||||||| |||||||||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct: 722 tccaggagcccgagctccgccgtcgccagcgtcaggacgtagacgaacagcccgaacagc 663

                                                                
Query: 425 gcgtgccacggcagagccccgcgcctcacgtccggcgccgcgccggggaagaa 477
            ||||||||||||| |||||||||||||||| |||||||||||||||| ||||
Sbjct: 662 acgtgccacggcagcgccccgcgcctcacgtgcggcgccgcgccggggtagaa 610
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>dbj|AK061426.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-G12, full
           insert sequence
          Length = 1078

 Score =  264 bits (133), Expect = 2e-67
 Identities = 208/233 (89%)
 Strand = Plus / Minus

                                                                       
Query: 245 gcgacggcagcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttg 304
           |||||||| || ||||| |||||||||||||  ||| | ||||| ||  |||||||||| 
Sbjct: 840 gcgacggcggccacgacgacggcggcgccgaacagcgcgacgaccagccccgtgaagttc 781

                                                                       
Query: 305 tccaggagcgcctccgggccgtacttgtcgagcccggagctctgcaggaaggtcatcttc 364
            |||||| |||||||| ||||||||||||||| ||||||||||| |||||||||| ||||
Sbjct: 780 accaggaacgcctccgcgccgtacttgtcgaggccggagctctggaggaaggtcagcttc 721

                                                                       
Query: 365 tccaggaacccgagctccgccgtcgccagcgtgagcacgtagacgaagagcccgaacagc 424
           ||||||| |||||||||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct: 720 tccaggagcccgagctccgccgtcgccagcgtcaggacgtagacgaacagcccgaacagc 661

                                                                
Query: 425 gcgtgccacggcagagccccgcgcctcacgtccggcgccgcgccggggaagaa 477
            ||||||||||||| |||||||||||||||| |||||||||||||||| ||||
Sbjct: 660 acgtgccacggcagcgccccgcgcctcacgtgcggcgccgcgccggggtagaa 608
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>gb|AY110878.1| Zea mays CL16535_1 mRNA sequence
          Length = 1068

 Score =  147 bits (74), Expect = 4e-32
 Identities = 122/140 (87%)
 Strand = Plus / Minus

                                                                       
Query: 293 gccgtgaagttgtccaggagcgcctccgggccgtacttgtcgagcccggagctctgcagg 352
           |||||||||||| |||||| |||||| | |||||||||||||||      ||||| ||||
Sbjct: 801 gccgtgaagttgaccaggaacgcctcggcgccgtacttgtcgagnnnnnngctctccagg 742

                                                                       
Query: 353 aaggtcatcttctccaggaacccgagctccgccgtcgccagcgtgagcacgtagacgaag 412
           ||||||| |||||||||||||||||||||||| ||||||||||  || ||||||||||||
Sbjct: 741 aaggtcagcttctccaggaacccgagctccgcggtcgccagcgccagaacgtagacgaag 682

                               
Query: 413 agcccgaacagcgcgtgcca 432
           || ||||| |||||||||||
Sbjct: 681 aggccgaagagcgcgtgcca 662
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>ref|NM_197235.1| Oryza sativa (japonica cultivar-group) putative cytochrome b-561
           (OSJNBb0073N24.15), mRNA
          Length = 693

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                
Query: 350 aggaaggtcatcttctccaggaacccgagctccgccg 386
           |||||||| | ||||||||||||||| ||||||||||
Sbjct: 536 aggaaggtgagcttctccaggaaccccagctccgccg 500
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>gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0062C05 map S21174S, complete sequence
          Length = 178867

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                  
Query: 350   aggaaggtcatcttctccaggaacccgagctccgccg 386
             |||||||| | ||||||||||||||| ||||||||||
Sbjct: 34668 aggaaggtgagcttctccaggaaccccagctccgccg 34704
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>gb|AC011676.10| Homo sapiens chromosome , clone RP11-10J21, complete sequence
          Length = 197630

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                       
Query: 348    gcaggaaggtcatcttctccaggaa 372
              |||||||||||||||||||||||||
Sbjct: 135415 gcaggaaggtcatcttctccaggaa 135391
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>gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 genomic sequence, complete
              sequence
          Length = 130058

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                   
Query: 350    aggaaggtcatcttctccaggaacccgagctccgccg 386
              |||||||| | ||||||||||||||| ||||||||||
Sbjct: 100526 aggaaggtgagcttctccaggaaccccagctccgccg 100562
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                     
Query: 350      aggaaggtcatcttctccaggaacccgagctccgccg 386
                |||||||| | ||||||||||||||| ||||||||||
Sbjct: 18739248 aggaaggtgagcttctccaggaaccccagctccgccg 18739284
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>dbj|AK111107.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-176-A03, full
           insert sequence
          Length = 946

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                
Query: 350 aggaaggtcatcttctccaggaacccgagctccgccg 386
           |||||||| | ||||||||||||||| ||||||||||
Sbjct: 615 aggaaggtgagcttctccaggaaccccagctccgccg 579
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                     
Query: 350      aggaaggtcatcttctccaggaacccgagctccgccg 386
                |||||||| | ||||||||||||||| ||||||||||
Sbjct: 18750101 aggaaggtgagcttctccaggaaccccagctccgccg 18750137
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>gb|U39743.2| Caenorhabditis elegans cosmid R173, complete sequence
          Length = 34861

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 18   agtgcagttttcagtaatcaa 38
            |||||||||||||||||||||
Sbjct: 6299 agtgcagttttcagtaatcaa 6319
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 255     cgacgaccacggcggcgccga 275
               |||||||||||||||||||||
Sbjct: 3806661 cgacgaccacggcggcgccga 3806641
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 254      gcgacgaccacggcggcgccg 274
                |||||||||||||||||||||
Sbjct: 10623378 gcgacgaccacggcggcgccg 10623398
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>dbj|AK072326.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023026M23, full
           insert sequence
          Length = 3395

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 254 gcgacgaccacggcggcgccg 274
           |||||||||||||||||||||
Sbjct: 322 gcgacgaccacggcggcgccg 342
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>gb|AC169088.2| Gallus gallus BAC clone CH261-100B3 from chromosome ul, complete sequence
          Length = 214859

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 335    agcccggagctctgcaggaag 355
              |||||||||||||||||||||
Sbjct: 103661 agcccggagctctgcaggaag 103681
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 254      gcgacgaccacggcggcgccg 274
                |||||||||||||||||||||
Sbjct: 10623260 gcgacgaccacggcggcgccg 10623280
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>emb|AL772419.4|CNS08C9X Oryza sativa chromosome 12, . BAC OJ1115_G02 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 112916

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 254   gcgacgaccacggcggcgccg 274
             |||||||||||||||||||||
Sbjct: 86681 gcgacgaccacggcggcgccg 86701
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>ref|XM_478588.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2356

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 451 cacgtccggcgccgcgccgg 470
           ||||||||||||||||||||
Sbjct: 352 cacgtccggcgccgcgccgg 333
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>gb|AF268389.1| Salmonella enteritidis plasmid pJ Rep (rep) gene, complete cds
          Length = 2096

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 237 ccgcgggagcgacggcagcg 256
           ||||||||||||||||||||
Sbjct: 567 ccgcgggagcgacggcagcg 586
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>gb|AC145510.2| Gasterosteus aculeatus clone CH213-60G7, complete sequence
          Length = 183847

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 373    cccgagctccgccgtcgccagcgt 396
              ||||||||||||| ||||||||||
Sbjct: 177195 cccgagctccgccttcgccagcgt 177172
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>ref|XM_765795.1| Giardia lamblia ATCC 50803 hypothetical protein
           (GLP_56_51041_50559) partial mRNA
          Length = 483

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 339 cggagctctgcaggaaggtc 358
           ||||||||||||||||||||
Sbjct: 268 cggagctctgcaggaaggtc 249
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>ref|XM_765796.1| Giardia lamblia ATCC 50803 phosphate dikinase (GLP_56_50716_53370)
           partial mRNA
          Length = 2655

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 339 cggagctctgcaggaaggtc 358
           ||||||||||||||||||||
Sbjct: 59  cggagctctgcaggaaggtc 78
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>gb|AC145764.2| Gasterosteus aculeatus clone CH213-118A19, complete sequence
          Length = 192556

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 373    cccgagctccgccgtcgccagcgt 396
              ||||||||||||| ||||||||||
Sbjct: 110030 cccgagctccgccttcgccagcgt 110053
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>emb|Z54168.1|GDPPDKGN G.duodenalis gene for pyruvate phosphate dikinase
          Length = 4212

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 339  cggagctctgcaggaaggtc 358
            ||||||||||||||||||||
Sbjct: 1209 cggagctctgcaggaaggtc 1228
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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 273     cgaggagcaccacgacgagg 292
               ||||||||||||||||||||
Sbjct: 1219685 cgaggagcaccacgacgagg 1219666
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 257     acgaccacggcggcgccgag 276
               ||||||||||||||||||||
Sbjct: 2117350 acgaccacggcggcgccgag 2117331
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>emb|AJ278573.1|SNA278573 Streptomyces natalensis pimaricin biosynthetic gene cluster
          Length = 84985

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 306   ccaggagcgcctccgggccg 325
             ||||||||||||||||||||
Sbjct: 60989 ccaggagcgcctccgggccg 61008
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>emb|AJ132222.1|SNA132222 Streptomyces natalensis pimS1 gene
          Length = 20394

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 306   ccaggagcgcctccgggccg 325
             ||||||||||||||||||||
Sbjct: 20164 ccaggagcgcctccgggccg 20145
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>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome
          Length = 4171146

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 253     agcgacgaccacggcggcgc 272
               ||||||||||||||||||||
Sbjct: 3028884 agcgacgaccacggcggcgc 3028903
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>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome
          Length = 2679306

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 255     cgacgaccacggcggcgccg 274
               ||||||||||||||||||||
Sbjct: 2489130 cgacgaccacggcggcgccg 2489111
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 451      cacgtccggcgccgcgccgg 470
                ||||||||||||||||||||
Sbjct: 21306424 cacgtccggcgccgcgccgg 21306405
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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 258    cgaccacggcggcgccgagg 277
              ||||||||||||||||||||
Sbjct: 462681 cgaccacggcggcgccgagg 462662
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>gb|AF096871.1|AF096871 Zea mays calcium ATPase (cap1) mRNA, complete cds
          Length = 3310

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 292  ggccgtgaagttgtccagga 311
            ||||||||||||||||||||
Sbjct: 2672 ggccgtgaagttgtccagga 2653
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 255     cgacgaccacggcggcgccgaggagcac 282
               ||||||||||||||| ||||||| ||||
Sbjct: 1127665 cgacgaccacggcggagccgaggggcac 1127638
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>dbj|AP003736.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1008_E09
          Length = 101964

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 451   cacgtccggcgccgcgccgg 470
             ||||||||||||||||||||
Sbjct: 26592 cacgtccggcgccgcgccgg 26573
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>dbj|AP005786.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0458H05
          Length = 136299

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 451   cacgtccggcgccgcgccgg 470
             ||||||||||||||||||||
Sbjct: 92709 cacgtccggcgccgcgccgg 92690
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>dbj|AK100722.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023116H24, full
           insert sequence
          Length = 2354

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 451 cacgtccggcgccgcgccgg 470
           ||||||||||||||||||||
Sbjct: 352 cacgtccggcgccgcgccgg 333
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>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib
          Length = 2013089

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 373     cccgagctccgccgtcgccagcgt 396
               |||||||||||| |||||||||||
Sbjct: 1568981 cccgagctccgctgtcgccagcgt 1568958
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>emb|AL929464.9| Zebrafish DNA sequence from clone CH211-255L14 in linkage group 25,
             complete sequence
          Length = 193619

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    acacacaaaccagacgtgaa 77
             ||||||||||||||||||||
Sbjct: 36775 acacacaaaccagacgtgaa 36756
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>gb|AC026351.29| Homo sapiens 12 BAC RP11-176O5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 179350

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 139   cagacgttcaacaatcagca 158
             ||||||||||||||||||||
Sbjct: 96679 cagacgttcaacaatcagca 96698
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>gb|BC083571.1| Rattus norvegicus progesterone receptor membrane component 2, mRNA
           (cDNA clone MGC:93874 IMAGE:7112203), complete cds
          Length = 1974

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 238 cgcgggagcgacggcagcga 257
           ||||||||||||||||||||
Sbjct: 88  cgcgggagcgacggcagcga 107
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>gb|U43531.1|GLU43531 Giardia intestinalis pyruvate,phosphate dikinase gene, complete cds
          Length = 2803

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 339 cggagctctgcaggaaggtc 358
           ||||||||||||||||||||
Sbjct: 185 cggagctctgcaggaaggtc 204
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>ref|NM_001008374.1| Rattus norvegicus progesterone receptor membrane component 2
           (Pgrmc2), mRNA
          Length = 1974

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 238 cgcgggagcgacggcagcga 257
           ||||||||||||||||||||
Sbjct: 88  cgcgggagcgacggcagcga 107
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>emb|CT005238.2| Methylocapsa acidiphila B2, overlapping BAC clones, complete sequence
          Length = 100887

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 433   cggcagagccccgcgcctca 452
             ||||||||||||||||||||
Sbjct: 36169 cggcagagccccgcgcctca 36188


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,936,169
Number of Sequences: 3902068
Number of extensions: 2936169
Number of successful extensions: 62973
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62114
Number of HSP's gapped (non-prelim): 858
length of query: 477
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 455
effective length of database: 17,147,199,772
effective search space: 7801975896260
effective search space used: 7801975896260
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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