Clone Information

BLAST Search Result

Clone Name	rbart29b09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding p...	50	2e-06
2	GRP2B_ARATH (Q38896) Glycine-rich protein 2b (AtGRP2b)	41	0.001
3	GRP2_NICSY (P27484) Glycine-rich protein 2	40	0.003
4	CNBP_MOUSE (P53996) Cellular nucleic acid-binding protein (CNBP)...	37	0.024
5	CNBP_CHICK (O42395) Cellular nucleic acid-binding protein (CNBP)...	37	0.024
6	CNBP_RAT (P62634) Cellular nucleic acid-binding protein (CNBP) (...	37	0.024
7	CNBP_PONPY (Q5R5R5) Cellular nucleic acid-binding protein (CNBP)...	37	0.024
8	CNBP_HUMAN (P62633) Cellular nucleic acid-binding protein (CNBP)...	37	0.024
9	GIS2_YEAST (P53849) Zinc-finger protein GIS2	37	0.024
10	GLH2_CAEEL (Q966L9) ATP-dependent RNA helicase glh-2 (EC 3.6.1.-...	37	0.031
11	GLH1_CAEEL (P34689) ATP-dependent RNA helicase glh-1 (EC 3.6.1.-...	37	0.031
12	GAG_MPMV (P07567) Gag polyprotein (Core polyprotein) [Contains: ...	36	0.041
13	ZCHC5_HUMAN (Q8N8U3) Zinc finger CCHC domain-containing protein 5	34	0.20
14	ZCH13_HUMAN (Q8WW36) Zinc finger CCHC domain-containing protein 13	34	0.20
15	BYR3_SCHPO (P36627) Cellular nucleic acid-binding protein homolog	33	0.35
16	ZCHC9_HUMAN (Q8N567) Zinc finger CCHC domain-containing protein 9	32	0.59
17	POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran...	32	0.59
18	LARK_DROME (Q94901) RNA-binding protein lark	32	0.59
19	ZCHC9_MOUSE (Q8R1J3) Zinc finger CCHC domain-containing protein 9	32	0.59
20	GAG_HTL1M (P14077) Gag polyprotein [Contains: Major core protein...	32	0.78
21	GAG_GALV (P21416) Gag polyprotein [Contains: Core protein p15; C...	32	0.78
22	GAG_HTL1C (P14076) Gag polyprotein [Contains: Major core protein...	32	0.78
23	GAG_HTL1A (P03345) Gag polyprotein [Contains: Major core protein...	32	0.78
24	ZCH11_HUMAN (Q5TAX3) Zinc finger CCHC domain-containing protein 11	32	1.0
25	RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif pro...	32	1.0
26	RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif pro...	31	1.3
27	RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif pro...	31	1.3
28	RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif pro...	31	1.3
29	RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif p...	31	1.3
30	RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif p...	31	1.3
31	RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif pro...	31	1.3
32	RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif pro...	31	1.3
33	COAT_SOCMV (P15627) Coat protein	31	1.3
34	GAG_BLVJ (P03344) Gag polyprotein [Contains: Core protein p15 (M...	31	1.3
35	GLH4_CAEEL (O76743) ATP-dependent RNA helicase glh-4 (EC 3.6.1.-...	31	1.3
36	AIR2_YEAST (Q12476) Protein AIR2 (Arginine methyltransferase-int...	31	1.3
37	GAG_HTLV2 (P03346) Gag polyprotein [Contains: Core protein p15 (...	31	1.7
38	YL92_SCHPO (Q9HFF2) Hypothetical protein C683.02c in chromosome I	30	2.3
39	GAG_HV2SB (P12450) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	30	2.3
40	POL_HV2SB (P12451) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	30	2.3
41	COAT_FMVD (P09519) Probable coat protein	30	2.3
42	GAG_RSVP (P03322) Gag polyprotein [Contains: Core protein p19; C...	30	2.9
43	GAK18_HUMAN (P62690) HERV-K_22q11.23 provirus ancestral Gag poly...	30	2.9
44	GAG_BIV27 (P19559) Gag polyprotein (p53) [Contains: Matrix prote...	30	2.9
45	GAG_BIV06 (P19558) Gag polyprotein (p53) [Contains: Matrix prote...	30	2.9
46	GAG_MMTVC (P11284) Gag polyprotein [Contains: Protein p10; Phosp...	30	2.9
47	POL_HV1JR (P20875) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	30	2.9
48	GAG_SRV1 (P04022) Gag polyprotein (Core polyprotein) [Contains: ...	30	2.9
49	GAG_HV1JR (P20873) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	30	2.9
50	GAG_SIVVT (P05892) Gag polyprotein [Contains: Core protein p17; ...	30	3.8
51	AIR1_YEAST (P40507) Protein AIR1 (Arginine methyltransferase-int...	30	3.8
52	ZCHC6_MOUSE (Q5BLK4) Zinc finger CCHC domain-containing protein 6	30	3.8
53	ZCHC6_HUMAN (Q5VYS8) Zinc finger CCHC domain-containing protein 6	30	3.8
54	GAG_BLVAU (P25058) Gag polyprotein [Contains: Core protein p15 (...	30	3.8
55	POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;...	30	3.8
56	GAG_SRV2 (P51516) Gag polyprotein (Core polyprotein) [Contains: ...	30	3.8
57	POL_HV2ST (P20876) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	29	5.0
58	GAG_SIVVG (P27978) Gag polyprotein [Contains: Core protein p17; ...	29	5.0
59	GAG_IPMA (P11365) Retrovirus-related Gag polyprotein [Contains: ...	29	5.0
60	GAG_SIVV1 (P27972) Gag polyprotein [Contains: Core protein p17; ...	29	5.0
61	GAG_HV2ST (P20874) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	29	5.0
62	GAG_SIVG1 (Q02843) Gag polyprotein [Contains: Core protein p17; ...	29	5.0
63	GAG_HV2G1 (P18041) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	29	6.6
64	ZCHC2_MOUSE (Q69ZB8) Zinc finger CCHC domain-containing protein ...	29	6.6
65	POL_HV2G1 (P18042) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	29	6.6
66	POL_HV2D1 (P17757) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	29	6.6
67	GAG_MMTVB (P10258) Gag polyprotein [Contains: Protein p10; Phosp...	29	6.6
68	GAG_HV1BR (P03348) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	29	6.6
69	GAG_HV1B5 (P04593) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	29	6.6
70	GAG_HV2D1 (P17756) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	29	6.6
71	ZCHC2_HUMAN (Q9C0B9) Zinc finger CCHC domain-containing protein ...	29	6.6
72	POL_HV1BR (P03367) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	29	6.6
73	POL_HV1B5 (P04587) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	29	6.6
74	GAK8_HUMAN (Q9HDB9) HERV-K_3q12.3 provirus ancestral Gag polypro...	29	6.6
75	GAG_HV1LW (Q70622) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	29	6.6
76	GAG_SIVSP (P19504) Gag polyprotein [Contains: Core protein p17; ...	29	6.6
77	POL_HV2KR (Q74120) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	28	8.6
78	GAG_HV2RO (P04590) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	28	8.6
79	POL_HV2D2 (P15833) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	28	8.6
80	POL_HV2RO (P04584) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	28	8.6
81	MSL5_YEAST (Q12186) Branchpoint-bridging protein MSL5 (MUD synth...	28	8.6
82	ZCHC7_HUMAN (Q8N3Z6) Zinc finger CCHC domain-containing protein 7	28	8.6
83	RBBP6_MOUSE (P97868) Retinoblastoma-binding protein 6 (p53-assoc...	28	8.6
84	POL_HV2CA (P24107) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	28	8.6
85	GAG_HV2KR (Q74119) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	28	8.6
86	GAG_HV2D2 (P15832) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	28	8.6
87	GAG_HV2CA (P24106) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	28	8.6
88	GAG_HV1C4 (P05887) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	28	8.6
89	RBBP6_HUMAN (Q7Z6E9) Retinoblastoma-binding protein 6 (p53-assoc...	28	8.6
90	POL_HV1C4 (P05960) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	28	8.6

>HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding protein)|
          Length = 271

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 23/60 (38%), Positives = 27/60 (45%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNKA 279
           CGEEGH+SR+CP                              CF CGE+GH SR+CPN A
Sbjct: 48  CGEEGHMSRECPNEARSGAAGAMT------------------CFRCGEAGHMSRDCPNSA 89



 Score = 48.5 bits (114), Expect = 8e-06
 Identities = 22/60 (36%), Positives = 27/60 (45%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNKA 279
           CG+EGH +R+CP+                             CF CGE GH SRECPN+A
Sbjct: 21  CGKEGHYARECPEADSKGDERSTT------------------CFRCGEEGHMSRECPNEA 62



 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 20/58 (34%), Positives = 26/58 (44%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPN 285
           CG+EGH+SRDCP                              C+ CG++GH SR+CPN
Sbjct: 102 CGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRT--CYKCGDAGHISRDCPN 157



 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 22/58 (37%), Positives = 25/58 (43%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPN 285
           CG+ GHISRDCP                              C+ CGESGH SRECP+
Sbjct: 173 CGDAGHISRDCPNGQGGYSGAGDRK-----------------CYKCGESGHMSRECPS 213



 Score = 45.1 bits (105), Expect = 9e-05
 Identities = 20/58 (34%), Positives = 25/58 (43%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPN 285
           CG+ GHISRDCP                              C+ CG++GH SR+CPN
Sbjct: 145 CGDAGHISRDCPNGQGGYSGAGDRT-----------------CYKCGDAGHISRDCPN 185



 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPN 285
           CG+ GHISR+CP+                             C+ CGE+GH SR+CP+
Sbjct: 227 CGKPGHISRECPEAGGSYGGSRGGGDRT--------------CYKCGEAGHISRDCPS 270



 Score = 42.7 bits (99), Expect = 4e-04
 Identities = 19/58 (32%), Positives = 24/58 (41%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPN 285
           CGE GH+SRDCP                              C+ CG+ GH SR+CP+
Sbjct: 75  CGEAGHMSRDCPNSAKPGAAKGFE------------------CYKCGQEGHLSRDCPS 114



 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 19/57 (33%), Positives = 23/57 (40%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECP 288
           CGE GH+SR+CP                              C+ CG+ GH SRECP
Sbjct: 201 CGESGHMSRECPSAGSTGSGDRA-------------------CYKCGKPGHISRECP 238



 Score = 30.4 bits (67), Expect = 2.3
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -1

Query: 332 CFSCGESGHFSRECP 288
           C +CG+ GH++RECP
Sbjct: 18  CRNCGKEGHYARECP 32

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>GRP2B_ARATH (Q38896) Glycine-rich protein 2b (AtGRP2b)|
          Length = 201

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 291
           CGE GH++R+C Q                             C+SCGESGHF+R+C
Sbjct: 141 CGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLS-CYSCGESGHFARDC 195



 Score = 30.8 bits (68), Expect = 1.7
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -1

Query: 332 CFSCGESGHFSREC 291
           CF CGE GH +REC
Sbjct: 138 CFKCGEPGHMAREC 151

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>GRP2_NICSY (P27484) Glycine-rich protein 2|
          Length = 214

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 19/56 (33%), Positives = 22/56 (39%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 291
           CGE GH +RDC Q                             C+ CGE GHF+REC
Sbjct: 162 CGESGHFARDCSQSGGGGGGGRFGGGGGGGGGGG--------CYKCGEDGHFAREC 209



 Score = 33.9 bits (76), Expect = 0.20
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = -1

Query: 332 CFSCGESGHFSREC 291
           CF CGESGHF+R+C
Sbjct: 159 CFKCGESGHFARDC 172

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>CNBP_MOUSE (P53996) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 178

 Score = 37.0 bits (84), Expect = 0.024
 Identities = 19/60 (31%), Positives = 24/60 (40%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNKA 279
           CGE GHI +DC +                             C+ CGESGH +REC  +A
Sbjct: 123 CGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVN------CYRCGESGHLARECTIEA 176



 Score = 34.7 bits (78), Expect = 0.12
 Identities = 15/56 (26%), Positives = 21/56 (37%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 291
           CG  GHI++DC +                             C+SCGE GH  ++C
Sbjct: 78  CGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC 133



 Score = 33.9 bits (76), Expect = 0.20
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -1

Query: 332 CFSCGESGHFSRECP 288
           CF CG SGH++RECP
Sbjct: 6   CFKCGRSGHWARECP 20



 Score = 33.5 bits (75), Expect = 0.27
 Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXG---CFSCGESGHFSREC 291
           CG  GH +R+CP                                 C+ CGESGH +++C
Sbjct: 9   CGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDC 67

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>CNBP_CHICK (O42395) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 172

 Score = 37.0 bits (84), Expect = 0.024
 Identities = 19/60 (31%), Positives = 24/60 (40%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNKA 279
           CGE GHI +DC +                             C+ CGESGH +REC  +A
Sbjct: 117 CGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVN------CYRCGESGHLARECTIEA 170



 Score = 34.7 bits (78), Expect = 0.12
 Identities = 15/56 (26%), Positives = 21/56 (37%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 291
           CG  GHI++DC +                             C+SCGE GH  ++C
Sbjct: 72  CGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC 127



 Score = 33.9 bits (76), Expect = 0.20
 Identities = 15/56 (26%), Positives = 21/56 (37%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 291
           CG  GH +R+CP                              C+ CGESGH +++C
Sbjct: 9   CGRTGHWARECP---TGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDC 61



 Score = 32.7 bits (73), Expect = 0.45
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -1

Query: 332 CFSCGESGHFSRECP 288
           CF CG +GH++RECP
Sbjct: 6   CFKCGRTGHWARECP 20

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>CNBP_RAT (P62634) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 177

 Score = 37.0 bits (84), Expect = 0.024
 Identities = 19/60 (31%), Positives = 24/60 (40%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNKA 279
           CGE GHI +DC +                             C+ CGESGH +REC  +A
Sbjct: 122 CGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVN------CYRCGESGHLARECTIEA 175



 Score = 34.7 bits (78), Expect = 0.12
 Identities = 15/56 (26%), Positives = 21/56 (37%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 291
           CG  GHI++DC +                             C+SCGE GH  ++C
Sbjct: 77  CGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC 132



 Score = 33.9 bits (76), Expect = 0.20
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -1

Query: 332 CFSCGESGHFSRECP 288
           CF CG SGH++RECP
Sbjct: 6   CFKCGRSGHWARECP 20



 Score = 33.5 bits (75), Expect = 0.27
 Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXG---CFSCGESGHFSREC 291
           CG  GH +R+CP                                 C+ CGESGH +++C
Sbjct: 9   CGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDC 67

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>CNBP_PONPY (Q5R5R5) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 177

 Score = 37.0 bits (84), Expect = 0.024
 Identities = 19/60 (31%), Positives = 24/60 (40%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNKA 279
           CGE GHI +DC +                             C+ CGESGH +REC  +A
Sbjct: 122 CGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVN------CYRCGESGHLARECTIEA 175



 Score = 34.7 bits (78), Expect = 0.12
 Identities = 15/56 (26%), Positives = 21/56 (37%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 291
           CG  GHI++DC +                             C+SCGE GH  ++C
Sbjct: 77  CGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC 132



 Score = 33.9 bits (76), Expect = 0.20
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -1

Query: 332 CFSCGESGHFSRECP 288
           CF CG SGH++RECP
Sbjct: 6   CFKCGRSGHWARECP 20



 Score = 33.5 bits (75), Expect = 0.27
 Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXG---CFSCGESGHFSREC 291
           CG  GH +R+CP                                 C+ CGESGH +++C
Sbjct: 9   CGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDC 67

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>CNBP_HUMAN (P62633) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 177

 Score = 37.0 bits (84), Expect = 0.024
 Identities = 19/60 (31%), Positives = 24/60 (40%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNKA 279
           CGE GHI +DC +                             C+ CGESGH +REC  +A
Sbjct: 122 CGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVN------CYRCGESGHLARECTIEA 175



 Score = 34.7 bits (78), Expect = 0.12
 Identities = 15/56 (26%), Positives = 21/56 (37%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 291
           CG  GHI++DC +                             C+SCGE GH  ++C
Sbjct: 77  CGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC 132



 Score = 33.9 bits (76), Expect = 0.20
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -1

Query: 332 CFSCGESGHFSRECP 288
           CF CG SGH++RECP
Sbjct: 6   CFKCGRSGHWARECP 20



 Score = 33.5 bits (75), Expect = 0.27
 Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXG---CFSCGESGHFSREC 291
           CG  GH +R+CP                                 C+ CGESGH +++C
Sbjct: 9   CGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDC 67

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>GIS2_YEAST (P53849) Zinc-finger protein GIS2|
          Length = 153

 Score = 37.0 bits (84), Expect = 0.024
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 6/64 (9%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXX------XXXXXXXXXXXXXXGCFSCGESGHFSR 297
           C + GHISR+CP+                                   C++CG++GH SR
Sbjct: 70  CNQTGHISRECPEPKKTSRFSKVSCYKCGGPNHMAKDCMKEDGISGLKCYTCGQAGHMSR 129

Query: 296 ECPN 285
           +C N
Sbjct: 130 DCQN 133



 Score = 35.4 bits (80), Expect = 0.070
 Identities = 16/57 (28%), Positives = 23/57 (40%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECP 288
           CG+ GH+SRDC                               C++C E+GH S++CP
Sbjct: 121 CGQAGHMSRDCQNDRL--------------------------CYNCNETGHISKDCP 151



 Score = 33.9 bits (76), Expect = 0.20
 Identities = 16/57 (28%), Positives = 21/57 (36%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECP 288
           CGE GH+  +C                               CF+C ++GH SRECP
Sbjct: 52  CGETGHVRSEC---------------------------TVQRCFNCNQTGHISRECP 81

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>GLH2_CAEEL (Q966L9) ATP-dependent RNA helicase glh-2 (EC 3.6.1.-) (Germline|
           helicase 2)
          Length = 974

 Score = 36.6 bits (83), Expect = 0.031
 Identities = 20/60 (33%), Positives = 23/60 (38%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNKA 279
           C  EGH S +CP+                             CF+CGE GH S ECPN A
Sbjct: 458 CKGEGHRSAECPEPPRG-------------------------CFNCGEQGHRSNECPNPA 492



 Score = 29.6 bits (65), Expect = 3.8
 Identities = 15/59 (25%), Positives = 22/59 (37%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 282
           C + GH S DCP+                             C++C + GH SR+CP +
Sbjct: 376 CQQPGHRSNDCPEPKKEREPRV--------------------CYNCQQPGHNSRDCPEE 414



 Score = 29.6 bits (65), Expect = 3.8
 Identities = 15/59 (25%), Positives = 22/59 (37%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 282
           C + GH S DCP+                             C++C + GH SR+CP +
Sbjct: 262 CQQPGHRSNDCPEPKKEREPRV--------------------CYNCQQPGHNSRDCPEE 300

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>GLH1_CAEEL (P34689) ATP-dependent RNA helicase glh-1 (EC 3.6.1.-) (Germline|
           helicase 1)
          Length = 763

 Score = 36.6 bits (83), Expect = 0.031
 Identities = 20/60 (33%), Positives = 23/60 (38%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNKA 279
           C  EGH S +CP+                             CF+CGE GH S ECPN A
Sbjct: 247 CKGEGHRSAECPEPPRG-------------------------CFNCGEQGHRSNECPNPA 281

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>GAG_MPMV (P07567) Gag polyprotein (Core polyprotein) [Contains: Core protein|
           p10; Core phosphoprotein pp24; Core protein p12; Core
           protein p27; Core protein p14; Core protein p4]
          Length = 656

 Score = 36.2 bits (82), Expect = 0.041
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 332 CFSCGESGHFSRECPNKAH*AAQP-VRSECP 243
           CF CG+ GHF++ C   AH  A+P V   CP
Sbjct: 548 CFKCGKKGHFAKNCHEHAHNNAEPKVPGLCP 578

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>ZCHC5_HUMAN (Q8N8U3) Zinc finger CCHC domain-containing protein 5|
          Length = 475

 Score = 33.9 bits (76), Expect = 0.20
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -1

Query: 332 CFSCGESGHFSRECPNKAH*AAQ 264
           C  CG  GHF+R+CP K H A Q
Sbjct: 445 CLYCGYPGHFARDCPVKPHQALQ 467

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>ZCH13_HUMAN (Q8WW36) Zinc finger CCHC domain-containing protein 13|
          Length = 166

 Score = 33.9 bits (76), Expect = 0.20
 Identities = 14/56 (25%), Positives = 20/56 (35%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 291
           CG  GHI++DC                               C+SCG+ GH  ++C
Sbjct: 70  CGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCDRQKEQKCYSCGKLGHIQKDC 125



 Score = 29.3 bits (64), Expect = 5.0
 Identities = 14/56 (25%), Positives = 19/56 (33%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 291
           CG  GH +R CP+                             C+ CGESG  ++ C
Sbjct: 9   CGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYT----CYCCGESGRNAKNC 60

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>BYR3_SCHPO (P36627) Cellular nucleic acid-binding protein homolog|
          Length = 179

 Score = 33.1 bits (74), Expect = 0.35
 Identities = 15/58 (25%), Positives = 23/58 (39%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPN 285
           CGE GH +R+C +                             C++CG +GH  R+CP+
Sbjct: 22  CGENGHQARECTKGSICYNCNQTGHKASECTEPQQEKT----CYACGTAGHLVRDCPS 75



 Score = 29.6 bits (65), Expect = 3.8
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -1

Query: 332 CFSCGESGHFSREC 291
           C++CGE+GH +REC
Sbjct: 19  CYNCGENGHQAREC 32



 Score = 28.5 bits (62), Expect = 8.6
 Identities = 17/63 (26%), Positives = 20/63 (31%), Gaps = 7/63 (11%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXX-------XXXXXXXXXXXXXGCFSCGESGHFS 300
           CG  GHI+RDC                                      C+SCG+ GH S
Sbjct: 88  CGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVKCYSCGKIGHRS 147

Query: 299 REC 291
            EC
Sbjct: 148 FEC 150

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>ZCHC9_HUMAN (Q8N567) Zinc finger CCHC domain-containing protein 9|
          Length = 271

 Score = 32.3 bits (72), Expect = 0.59
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -1

Query: 332 CFSCGESGHFSRECPN 285
           CF CGE GH SR CP+
Sbjct: 186 CFVCGEMGHLSRSCPD 201



 Score = 28.5 bits (62), Expect = 8.6
 Identities = 16/57 (28%), Positives = 19/57 (33%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECP 288
           CGE GH+SR CP                             GC  CG   H  ++CP
Sbjct: 189 CGEMGHLSRSCPD------------------NPKGLYADGGGCKLCGSVEHLKKDCP 227

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>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from transposon TNT|
           1-94 [Includes: Protease (EC 3.4.23.-); Reverse
           transcriptase (EC 2.7.7.49); Endonuclease]
          Length = 1328

 Score = 32.3 bits (72), Expect = 0.59
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 332 CFSCGESGHFSRECPN 285
           C++C + GHF R+CPN
Sbjct: 232 CYNCNQPGHFKRDCPN 247

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>LARK_DROME (Q94901) RNA-binding protein lark|
          Length = 352

 Score = 32.3 bits (72), Expect = 0.59
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -1

Query: 332 CFSCGESGHFSRECP 288
           C+ CG SGH+S+ECP
Sbjct: 170 CYRCGRSGHWSKECP 184

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>ZCHC9_MOUSE (Q8R1J3) Zinc finger CCHC domain-containing protein 9|
          Length = 273

 Score = 32.3 bits (72), Expect = 0.59
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -1

Query: 332 CFSCGESGHFSRECPN 285
           CF CGE GH SR CP+
Sbjct: 186 CFVCGEMGHLSRSCPD 201



 Score = 29.3 bits (64), Expect = 5.0
 Identities = 15/56 (26%), Positives = 18/56 (32%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 291
           CGE GH+SR CP                              C  CG   HF ++C
Sbjct: 189 CGEMGHLSRSCPD------------------NTKGVYADGGSCKLCGSVEHFKKDC 226

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>GAG_HTL1M (P14077) Gag polyprotein [Contains: Major core protein p19; Major|
           core protein p24; Nucleic acid-binding protein p15]
          Length = 428

 Score = 32.0 bits (71), Expect = 0.78
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 332 CFSCGESGHFSRECPNKAH*AAQPVRSECPL 240
           CF CG++GH+SR+C        +P    CPL
Sbjct: 356 CFRCGKAGHWSRDCTQ-----PRPPPGPCPL 381

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>GAG_GALV (P21416) Gag polyprotein [Contains: Core protein p15; Core protein|
           p12; Core protein p30; Core protein p10]
          Length = 519

 Score = 32.0 bits (71), Expect = 0.78
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 332 CFSCGESGHFSRECPNKAH 276
           C  C E GH++RECP K H
Sbjct: 490 CAYCKEKGHWARECPRKKH 508

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>GAG_HTL1C (P14076) Gag polyprotein [Contains: Major core protein p19; Major|
           core protein p24; Nucleic acid-binding protein p15]
          Length = 429

 Score = 32.0 bits (71), Expect = 0.78
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 332 CFSCGESGHFSRECPNKAH*AAQPVRSECPL 240
           CF CG++GH+SR+C        +P    CPL
Sbjct: 357 CFRCGKAGHWSRDCTQ-----PRPPPGPCPL 382

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>GAG_HTL1A (P03345) Gag polyprotein [Contains: Major core protein p19; Major|
           core protein p24; Nucleic acid-binding protein p15]
          Length = 429

 Score = 32.0 bits (71), Expect = 0.78
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 332 CFSCGESGHFSRECPNKAH*AAQPVRSECPL 240
           CF CG++GH+SR+C        +P    CPL
Sbjct: 357 CFRCGKAGHWSRDCTQ-----PRPPPGPCPL 382

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>ZCH11_HUMAN (Q5TAX3) Zinc finger CCHC domain-containing protein 11|
          Length = 1644

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 8/35 (22%)
 Frame = -1

Query: 332  CFSCGESGHFSRECP--------NKAH*AAQPVRS 252
            CF CG++GH  RECP        N +  AAQ VR+
Sbjct: 1359 CFICGDAGHVRRECPEVKLARQRNSSVAAAQLVRN 1393

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>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)|
          Length = 419

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -1

Query: 332 CFSCGESGHFSRECP 288
           C+ CG+ GH+S+ECP
Sbjct: 162 CYRCGQEGHWSKECP 176

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>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a)
          Length = 362

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -1

Query: 332 CFSCGESGHFSRECP 288
           C+ CG+ GH+S+ECP
Sbjct: 162 CYRCGKEGHWSKECP 176

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>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark|
           homolog)
          Length = 359

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -1

Query: 332 CFSCGESGHFSRECP 288
           C+ CG+ GH+S+ECP
Sbjct: 162 CYRCGKEGHWSKECP 176

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>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
           (Zinc-responsive protein ZD7)
          Length = 357

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -1

Query: 332 CFSCGESGHFSRECP 288
           C+ CG+ GH+S+ECP
Sbjct: 162 CYRCGKEGHWSKECP 176

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>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
          Length = 357

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -1

Query: 332 CFSCGESGHFSRECP 288
           C+ CG+ GH+S+ECP
Sbjct: 162 CYRCGKEGHWSKECP 176

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>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
          Length = 359

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -1

Query: 332 CFSCGESGHFSRECP 288
           C+ CG+ GH+S+ECP
Sbjct: 162 CYRCGKEGHWSKECP 176

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>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a) (Lark homolog) (mLark)
          Length = 361

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -1

Query: 332 CFSCGESGHFSRECP 288
           C+ CG+ GH+S+ECP
Sbjct: 162 CYRCGKEGHWSKECP 176

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>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a) (Lark homolog) (hLark)
          Length = 364

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -1

Query: 332 CFSCGESGHFSRECP 288
           C+ CG+ GH+S+ECP
Sbjct: 162 CYRCGKEGHWSKECP 176

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>COAT_SOCMV (P15627) Coat protein|
          Length = 441

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 332 CFSCGESGHFSRECPNKAH*AAQPVR 255
           C+ C E GH++ ECP K +  AQ ++
Sbjct: 383 CWLCHEEGHYANECPKKDNKKAQTLK 408

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>GAG_BLVJ (P03344) Gag polyprotein [Contains: Core protein p15 (Matrix|
           protein); Core protein p24; Core protein p12]
          Length = 391

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 332 CFSCGESGHFSRECPNKAH*AAQPVRSECPL 240
           C+ C + GH++R+CP K   A  P    CP+
Sbjct: 346 CYRCLKEGHWARDCPTK---ATGPPPGPCPI 373

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>GLH4_CAEEL (O76743) ATP-dependent RNA helicase glh-4 (EC 3.6.1.-) (Germline|
           helicase 4)
          Length = 1156

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 16/59 (27%), Positives = 23/59 (38%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 282
           CG EGH + DC Q                             C +CG+ GHF+++C N+
Sbjct: 621 CGIEGHFAVDCDQPKVPRGP----------------------CRNCGQEGHFAKDCQNE 657



 Score = 30.4 bits (67), Expect = 2.3
 Identities = 15/59 (25%), Positives = 20/59 (33%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 282
           CG+EGH ++DC                               C  C E GH+  ECP +
Sbjct: 644 CGQEGHFAKDCQNERVRMEPTEP-------------------CRRCAEEGHWGYECPTR 683



 Score = 28.9 bits (63), Expect = 6.6
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 332 CFSCGESGHFSREC 291
           C +CGE GH S+EC
Sbjct: 572 CHNCGEEGHISKEC 585



 Score = 28.5 bits (62), Expect = 8.6
 Identities = 15/56 (26%), Positives = 22/56 (39%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 291
           CGEEGHIS++C +                             C +C + GHF+ +C
Sbjct: 575 CGEEGHISKECDK----------------------PKVPRFPCRNCEQLGHFASDC 608

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>AIR2_YEAST (Q12476) Protein AIR2 (Arginine methyltransferase-interacting RING|
           finger protein 2)
          Length = 344

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 14/59 (23%), Positives = 20/59 (33%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 282
           C + GH+ +DCP                              C  C E GH+  +CP+K
Sbjct: 66  CSQRGHLKKDCPHIICSYCGATDDHYSRHCPKAIQ-------CSKCDEVGHYRSQCPHK 117

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>GAG_HTLV2 (P03346) Gag polyprotein [Contains: Core protein p15 (p19); Core|
           protein p24; Core protein p12 (p15)]
          Length = 432

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 332 CFSCGESGHFSRECPNKAH*AAQPVRSECPL 240
           CF CG+ GH+SR+C        +P    CPL
Sbjct: 362 CFRCGKVGHWSRDCTQ-----PRPPPGPCPL 387

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>YL92_SCHPO (Q9HFF2) Hypothetical protein C683.02c in chromosome I|
          Length = 218

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXX--XXXGCFSCGESGHFSREC 291
           C ++GHI +DCP+                               CF C E+GH S +C
Sbjct: 82  CRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHENGHLSGQC 139

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>GAG_HV2SB (P12450) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 519

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 16/59 (27%), Positives = 22/59 (37%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 282
           CG+EGH +R C                              GC+ CG+SGH    CP++
Sbjct: 392 CGKEGHSARQC------------------------RAPRRQGCWKCGKSGHIMANCPDR 426

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>POL_HV2SB (P12451) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1461

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 16/59 (27%), Positives = 22/59 (37%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 282
           CG+EGH +R C                              GC+ CG+SGH    CP++
Sbjct: 392 CGKEGHSARQC------------------------RAPRRQGCWKCGKSGHIMANCPDR 426

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>COAT_FMVD (P09519) Probable coat protein|
          Length = 489

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 332 CFSCGESGHFSRECPNK 282
           C+ C E GH++ ECPN+
Sbjct: 411 CWICTEEGHYANECPNR 427

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>GAG_RSVP (P03322) Gag polyprotein [Contains: Core protein p19; Core protein|
           p2A; Core protein p2B; Core protein p10; Capsid protein
           p27; Inner coat protein p12; Protease p15 (EC 3.4.23.-)]
          Length = 701

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 332 CFSCGESGHFSRECPNK 282
           C++CG  GH+  +CP K
Sbjct: 509 CYTCGSPGHYQAQCPKK 525

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>GAK18_HUMAN (P62690) HERV-K_22q11.23 provirus ancestral Gag polyprotein (Gag|
           polyprotein) [Contains: Matrix protein; Capsid protein;
           Nucleocapsid protein]
          Length = 622

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -1

Query: 332 CFSCGESGHFSRECP--NKAH*AAQPVRSE 249
           C++CG+ GH  R CP  NK +   Q + S+
Sbjct: 592 CYNCGQIGHLKRSCPGLNKQNIINQAINSK 621

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>GAG_BIV27 (P19559) Gag polyprotein (p53) [Contains: Matrix protein p17;|
           Capsid protein p26; Nucleocapsid protein p14]
          Length = 476

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 15/59 (25%), Positives = 22/59 (37%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 282
           CG+ GH+ R+C Q                             C+ CG+ GH +R C +K
Sbjct: 408 CGKTGHLKRNCKQQK---------------------------CYHCGKPGHQARNCRSK 439

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>GAG_BIV06 (P19558) Gag polyprotein (p53) [Contains: Matrix protein p17;|
           Capsid protein p26; Nucleocapsid protein p14]
          Length = 476

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 15/59 (25%), Positives = 22/59 (37%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 282
           CG+ GH+ R+C Q                             C+ CG+ GH +R C +K
Sbjct: 408 CGKTGHLKRNCKQQK---------------------------CYHCGKPGHQARNCRSK 439

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>GAG_MMTVC (P11284) Gag polyprotein [Contains: Protein p10; Phosphorylated|
           protein pp21; Protein p3; Protein p8; Protein n; Major
           core protein p27; Nucleic acid-binding protein p14]
          Length = 590

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 332 CFSCGESGHFSREC 291
           CFSCG++GH  R+C
Sbjct: 526 CFSCGKTGHIKRDC 539

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>POL_HV1JR (P20875) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1438

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 16/59 (27%), Positives = 23/59 (38%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 282
           CG+EGHI+R+C                              GC+ CG+ GH  +EC  +
Sbjct: 394 CGKEGHIARNC------------------------RAPRKKGCWKCGKEGHQMKECTER 428

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>GAG_SRV1 (P04022) Gag polyprotein (Core polyprotein) [Contains: Core protein|
           p10; Core phosphoprotein pp18; Core protein p12; Core
           protein p27; Core protein p14; Core protein p4]
          Length = 657

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 332 CFSCGESGHFSRECPNKAH 276
           CF CG  GHF++ C    H
Sbjct: 549 CFKCGRKGHFAKNCHEHIH 567

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>GAG_HV1JR (P20873) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 503

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 16/59 (27%), Positives = 23/59 (38%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 282
           CG+EGHI+R+C                              GC+ CG+ GH  +EC  +
Sbjct: 394 CGKEGHIARNC------------------------RAPRKKGCWKCGKEGHQMKECTER 428

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>GAG_SIVVT (P05892) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24; Core protein p15]
          Length = 519

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 332 CFSCGESGHFSRECPNKAH*AAQPVRSEC 246
           C++CG+ GH  R+CP       +P +++C
Sbjct: 399 CYNCGKFGHMQRQCP-------EPRKTKC 420



 Score = 28.5 bits (62), Expect = 8.6
 Identities = 13/56 (23%), Positives = 20/56 (35%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 291
           CG+ GH+ R CP+                             C  CG+ GH +++C
Sbjct: 402 CGKFGHMQRQCPEPRKTK------------------------CLKCGKLGHLAKDC 433

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>AIR1_YEAST (P40507) Protein AIR1 (Arginine methyltransferase-interacting RING|
           finger protein 1)
          Length = 360

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 13/59 (22%), Positives = 21/59 (35%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 282
           C + GH+ R+CP                              C +C  +GH+  +CP+K
Sbjct: 79  CSQRGHLKRNCPHVICTYCGFMDDHYSQHCPKAII-------CTNCNANGHYKSQCPHK 130

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>ZCHC6_MOUSE (Q5BLK4) Zinc finger CCHC domain-containing protein 6|
          Length = 1491

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 332  CFSCGESGHFSRECP 288
            CF CG  GH  +ECP
Sbjct: 1449 CFICGREGHIKKECP 1463



 Score = 28.9 bits (63), Expect = 6.6
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 458  CGEEGHISRDCPQ 420
            CG EGHI ++CPQ
Sbjct: 1452 CGREGHIKKECPQ 1464

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>ZCHC6_HUMAN (Q5VYS8) Zinc finger CCHC domain-containing protein 6|
          Length = 1495

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 332  CFSCGESGHFSRECP 288
            CF CG  GH  +ECP
Sbjct: 1453 CFICGREGHIKKECP 1467



 Score = 28.9 bits (63), Expect = 6.6
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 458  CGEEGHISRDCPQ 420
            CG EGHI ++CPQ
Sbjct: 1456 CGREGHIKKECPQ 1468

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>GAG_BLVAU (P25058) Gag polyprotein [Contains: Core protein p15 (Matrix|
           protein); Core protein p24; Core protein p12]
          Length = 391

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 332 CFSCGESGHFSRECPNKAH*AAQPVRSECPL 240
           C+ C + GH++R+CP K      P    CP+
Sbjct: 346 CYRCLKEGHWARDCPTK---TTGPPPGPCPI 373

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>POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein; Protease (EC|
           3.4.23.-); Reverse transcriptase (EC 2.7.7.49);
           Ribonuclease H (EC 3.1.26.4)]
          Length = 1886

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 332 CFSCGESGHFSRECPNK 282
           C+ CG+ GH++ +C NK
Sbjct: 881 CYICGQEGHYANQCRNK 897

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>GAG_SRV2 (P51516) Gag polyprotein (Core polyprotein) [Contains: Core protein|
           p10; Core phosphoprotein pp18; Core protein p12; Core
           protein p27; Core protein p14; Core protein p4]
          Length = 653

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -1

Query: 332 CFSCGESGHFSREC 291
           CF CG+ GHF+++C
Sbjct: 545 CFKCGKKGHFAKDC 558

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>POL_HV2ST (P20876) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1462

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 15/59 (25%), Positives = 22/59 (37%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 282
           CG+EGH +R C                              GC+ CG++GH   +CP +
Sbjct: 393 CGKEGHSARQC------------------------RAPRRQGCWKCGKAGHIMAKCPER 427

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>GAG_SIVVG (P27978) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24; Core protein p15]
          Length = 521

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 332 CFSCGESGHFSRECP 288
           C++CG+ GH  R+CP
Sbjct: 404 CYNCGKFGHMQRQCP 418



 Score = 28.5 bits (62), Expect = 8.6
 Identities = 13/56 (23%), Positives = 20/56 (35%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 291
           CG+ GH+ R CP+                             C  CG+ GH +++C
Sbjct: 407 CGKFGHMQRQCPEPRKMR------------------------CLKCGKPGHLAKDC 438

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>GAG_IPMA (P11365) Retrovirus-related Gag polyprotein [Contains: Protease (EC|
           3.4.23.-)]
          Length = 827

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -1

Query: 332 CFSCGESGHFSREC 291
           CF+CG+ GHF ++C
Sbjct: 460 CFNCGKPGHFKKDC 473

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>GAG_SIVV1 (P27972) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24; Core protein p15]
          Length = 520

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 332 CFSCGESGHFSRECP 288
           C++CG+ GH  R+CP
Sbjct: 400 CYNCGKFGHMQRQCP 414



 Score = 28.5 bits (62), Expect = 8.6
 Identities = 13/56 (23%), Positives = 20/56 (35%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSREC 291
           CG+ GH+ R CP+                             C  CG+ GH +++C
Sbjct: 403 CGKFGHMQRQCPEPRKIK------------------------CLKCGKPGHLAKDC 434

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>GAG_HV2ST (P20874) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 520

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 15/59 (25%), Positives = 22/59 (37%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 282
           CG+EGH +R C                              GC+ CG++GH   +CP +
Sbjct: 393 CGKEGHSARQC------------------------RAPRRQGCWKCGKAGHIMAKCPER 427

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>GAG_SIVG1 (Q02843) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24; Core protein p15]
          Length = 513

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 14/58 (24%), Positives = 21/58 (36%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPN 285
           CG+ GH+ R+C                               CF CG+ GH +++C N
Sbjct: 395 CGKFGHMQRECK------------------------APRQIKCFKCGKIGHMAKDCKN 428



 Score = 28.9 bits (63), Expect = 6.6
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 332 CFSCGESGHFSREC 291
           CF+CG+ GH  REC
Sbjct: 392 CFNCGKFGHMQREC 405

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>GAG_HV2G1 (P18041) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 521

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 15/59 (25%), Positives = 22/59 (37%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 282
           CG+EGH +R C                              GC+ CG++GH   +CP +
Sbjct: 394 CGKEGHSARQC------------------------RAPRRQGCWKCGKTGHVMAKCPER 428

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>ZCHC2_MOUSE (Q69ZB8) Zinc finger CCHC domain-containing protein 2 (Fragment)|
          Length = 1168

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = -1

Query: 332  CFSCGESGHFSRECPNKAH*AAQP----VRSECPLP 237
            C++CG SGH++++C   +  A Q     +R   PLP
Sbjct: 1123 CYNCGVSGHYAQDCKQSSMEANQQGTYRLRYAPPLP 1158

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>POL_HV2G1 (P18042) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1463

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 15/59 (25%), Positives = 22/59 (37%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 282
           CG+EGH +R C                              GC+ CG++GH   +CP +
Sbjct: 394 CGKEGHSARQC------------------------RAPRRQGCWKCGKTGHVMAKCPER 428

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>POL_HV2D1 (P17757) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1461

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 15/59 (25%), Positives = 21/59 (35%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 282
           CG+EGH ++ C                              GC+ CG+SGH    CP +
Sbjct: 393 CGKEGHSAKQC------------------------RAPRRQGCWKCGKSGHIMANCPER 427

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>GAG_MMTVB (P10258) Gag polyprotein [Contains: Protein p10; Phosphorylated|
           protein pp21; Protein p3; Protein p8; Protein n; Major
           core protein p27; Nucleic acid-binding protein p14]
          Length = 590

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -1

Query: 332 CFSCGESGHFSRECPNK 282
           CFSCG++GH  ++C ++
Sbjct: 526 CFSCGKTGHIRKDCKDE 542

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>GAG_HV1BR (P03348) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 511

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 15/59 (25%), Positives = 23/59 (38%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 282
           CG+EGHI+R+C                              GC+ CG+ GH  ++C  +
Sbjct: 394 CGKEGHIARNC------------------------RAPRKKGCWKCGKEGHQMKDCTER 428

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>GAG_HV1B5 (P04593) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 511

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 15/59 (25%), Positives = 23/59 (38%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 282
           CG+EGHI+R+C                              GC+ CG+ GH  ++C  +
Sbjct: 394 CGKEGHIARNC------------------------KAPRKKGCWKCGKEGHQMKDCTER 428

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>GAG_HV2D1 (P17756) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 520

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 15/59 (25%), Positives = 21/59 (35%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 282
           CG+EGH ++ C                              GC+ CG+SGH    CP +
Sbjct: 393 CGKEGHSAKQC------------------------RAPRRQGCWKCGKSGHIMANCPER 427

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>ZCHC2_HUMAN (Q9C0B9) Zinc finger CCHC domain-containing protein 2 (Fragment)|
          Length = 899

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = -1

Query: 332 CFSCGESGHFSRECPNKAH*AAQP----VRSECPLP 237
           C++CG SGH++++C   +  A Q     +R   PLP
Sbjct: 854 CYNCGVSGHYAQDCKQSSMEANQQGTYRLRYAPPLP 889

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>POL_HV1BR (P03367) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1446

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 15/59 (25%), Positives = 23/59 (38%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 282
           CG+EGHI+R+C                              GC+ CG+ GH  ++C  +
Sbjct: 394 CGKEGHIARNC------------------------RAPRKKGCWKCGKEGHQMKDCTER 428

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>POL_HV1B5 (P04587) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1446

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 15/59 (25%), Positives = 23/59 (38%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 282
           CG+EGHI+R+C                              GC+ CG+ GH  ++C  +
Sbjct: 394 CGKEGHIARNC------------------------KAPRKKGCWKCGKEGHQMKDCTER 428

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>GAK8_HUMAN (Q9HDB9) HERV-K_3q12.3 provirus ancestral Gag polyprotein (Gag|
           polyprotein) (HERV-K(II) Gag protein) [Contains: Matrix
           protein; Capsid protein; Nucleocapsid protein]
          Length = 666

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 332 CFSCGESGHFSRECP 288
           C++CG+ GH  R CP
Sbjct: 544 CYNCGQIGHLKRSCP 558

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>GAG_HV1LW (Q70622) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 499

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 15/59 (25%), Positives = 23/59 (38%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 282
           CG+EGHI+R+C                              GC+ CG+ GH  ++C  +
Sbjct: 394 CGKEGHIARNC------------------------RAPRKKGCWKCGKEGHQMKDCTER 428

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>GAG_SIVSP (P19504) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24]
          Length = 507

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 15/59 (25%), Positives = 22/59 (37%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 282
           CG+EGH +R C                              GC+ CG++GH   +CP +
Sbjct: 397 CGKEGHSARQC------------------------RAPRRQGCWKCGKAGHVMAKCPER 431

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>POL_HV2KR (Q74120) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1462

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 15/59 (25%), Positives = 21/59 (35%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 282
           CG++GH +R C                              GC+ CG+SGH    CP +
Sbjct: 393 CGKDGHSARQC------------------------RAPRRQGCWKCGKSGHVMANCPER 427

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>GAG_HV2RO (P04590) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 521

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 15/59 (25%), Positives = 21/59 (35%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 282
           CG+EGH +R C                              GC+ CG+ GH    CP++
Sbjct: 393 CGKEGHSARQC------------------------RAPRRQGCWKCGKPGHIMTNCPDR 427

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>POL_HV2D2 (P15833) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1464

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 14/59 (23%), Positives = 22/59 (37%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 282
           CG++GH +R C                              GC+ CG++GH   +CP +
Sbjct: 392 CGKQGHTARQC------------------------RAPRRQGCWKCGKTGHIMSKCPER 426

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>POL_HV2RO (P04584) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1463

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 15/59 (25%), Positives = 21/59 (35%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 282
           CG+EGH +R C                              GC+ CG+ GH    CP++
Sbjct: 393 CGKEGHSARQC------------------------RAPRRQGCWKCGKPGHIMTNCPDR 427

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>MSL5_YEAST (Q12186) Branchpoint-bridging protein MSL5 (MUD synthesis lethal 5|
           protein)
          Length = 476

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 332 CFSCGESGHFSREC 291
           C  CG++GHFSR+C
Sbjct: 299 CKICGQTGHFSRDC 312

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>ZCHC7_HUMAN (Q8N3Z6) Zinc finger CCHC domain-containing protein 7|
          Length = 542

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 332 CFSCGESGHFSRECPNK 282
           C+ C + GH+  ECP +
Sbjct: 349 CYHCAQKGHYGHECPER 365

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>RBBP6_MOUSE (P97868) Retinoblastoma-binding protein 6 (p53-associated cellular|
           protein of testis) (Proliferation potential-related
           protein) (Protein P2P-R)
          Length = 1790

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 332 CFSCGESGHFSRECP 288
           CF CG+ GH+ + CP
Sbjct: 162 CFRCGKPGHYIKNCP 176

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>POL_HV2CA (P24107) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1461

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 15/59 (25%), Positives = 21/59 (35%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 282
           CG+EGH +R C                              GC+ CG+ GH    CP++
Sbjct: 393 CGKEGHSARQC------------------------RAPRRQGCWKCGKPGHIMTNCPDR 427

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>GAG_HV2KR (Q74119) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 520

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 15/59 (25%), Positives = 21/59 (35%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 282
           CG++GH +R C                              GC+ CG+SGH    CP +
Sbjct: 393 CGKDGHSARQC------------------------RAPRRQGCWKCGKSGHVMANCPER 427

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>GAG_HV2D2 (P15832) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 520

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 14/59 (23%), Positives = 22/59 (37%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 282
           CG++GH +R C                              GC+ CG++GH   +CP +
Sbjct: 392 CGKQGHTARQC------------------------RAPRRQGCWKCGKTGHIMSKCPER 426

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>GAG_HV2CA (P24106) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 520

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 15/59 (25%), Positives = 21/59 (35%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 282
           CG+EGH +R C                              GC+ CG+ GH    CP++
Sbjct: 393 CGKEGHSARQC------------------------RAPRRQGCWKCGKPGHIMTNCPDR 427

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>GAG_HV1C4 (P05887) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 499

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 15/59 (25%), Positives = 22/59 (37%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 282
           CG+EGHI+R+C                              GC+ CG  GH  ++C  +
Sbjct: 394 CGKEGHIARNC------------------------KAPRKKGCWKCGREGHQMKDCTER 428

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>RBBP6_HUMAN (Q7Z6E9) Retinoblastoma-binding protein 6 (p53-associated cellular|
           protein of testis) (Proliferation potential-related
           protein) (Protein P2P-R) (Retinoblastoma-binding Q
           protein 1) (Protein RBQ-1)
          Length = 1792

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 332 CFSCGESGHFSRECP 288
           CF CG+ GH+ + CP
Sbjct: 161 CFRCGKPGHYIKNCP 175

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>POL_HV1C4 (P05960) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR)] (Fragment)
          Length = 549

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 15/59 (25%), Positives = 22/59 (37%)
 Frame = -1

Query: 458 CGEEGHISRDCPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCFSCGESGHFSRECPNK 282
           CG+EGHI+R+C                              GC+ CG  GH  ++C  +
Sbjct: 394 CGKEGHIARNC------------------------KAPRKKGCWKCGREGHQMKDCTER 428


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,795,911
Number of Sequences: 219361
Number of extensions: 535123
Number of successful extensions: 1798
Number of sequences better than 10.0: 134
Number of HSP's better than 10.0 without gapping: 1261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1729
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result