ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart29b02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_192269.1| Oryza sativa (japonica cultivar-group), predic... 172 8e-40
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 103 6e-19
3dbj|AP003855.3| Oryza sativa (japonica cultivar-group) genomic D... 103 6e-19
4ref|NM_102381.2| Arabidopsis thaliana catalytic AT1G26160 mRNA, ... 54 5e-04
5gb|AY113965.1| Arabidopsis thaliana unknown protein (At1g26160) ... 54 5e-04
6gb|AY056247.1| Arabidopsis thaliana unknown protein (At1g26160) ... 54 5e-04
7emb|BX818491.1|CNS0ACOV Arabidopsis thaliana Full-length cDNA Co... 54 5e-04
8gb|AY087714.1| Arabidopsis thaliana clone 37861 mRNA, complete s... 54 5e-04
9dbj|AK058557.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.008
10emb|BX545915.7| Zebrafish DNA sequence from clone DKEY-41B16 in ... 42 1.9
11gb|AC079829.6|AC079829 Arabidopsis thaliana chromosome 1 BAC F28... 42 1.9
12gb|AC171010.3| Gallus gallus BAC clone CH261-161I5 from chromoso... 42 1.9
13gb|CP000017.1| Streptococcus pyogenes MGAS5005, complete genome 40 7.4
14gb|CP000003.1| Streptococcus pyogenes MGAS10394, complete genome 40 7.4
15gb|AE006586.1| Streptococcus pyogenes M1 GAS, section 115 of 167... 40 7.4
16gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome 40 7.4
17gb|CP000261.1| Streptococcus pyogenes MGAS2096, complete genome 40 7.4
18gb|CP000260.1| Streptococcus pyogenes MGAS10270, complete genome 40 7.4
19gb|CP000259.1| Streptococcus pyogenes MGAS9429, complete genome 40 7.4
20gb|AC115843.10| Mus musculus chromosome 9, clone RP24-239P6, com... 40 7.4
21gb|AC122158.17| Mus musculus strain 129/Sv clone ct7-433o3 map 1... 40 7.4
22gb|AC119847.12| Mus musculus chromosome 3, clone RP23-46L5, comp... 40 7.4
23gb|AC133892.9| Mus musculus chromosome 1, clone RP23-279J5, comp... 40 7.4
24gb|CP000056.1| Streptococcus pyogenes MGAS6180, complete genome 40 7.4
25gb|AC132859.11| Mus musculus chromosome 1, clone RP24-389O14, co... 40 7.4
26emb|AL391728.19| Human DNA sequence from clone RP11-423A18 on ch... 40 7.4
27emb|AL049596.15|HSJ300A12 Human DNA sequence from clone RP1-300A... 40 7.4
28emb|CR293508.9| Zebrafish DNA sequence from clone CH211-13K20 in... 40 7.4
29emb|CR378665.1| Photobacterium profundum SS9; segment 3/12 40 7.4
30emb|AL954353.14| Mouse DNA sequence from clone RP23-156D8 on chr... 40 7.4
31gb|AE010069.1| Streptococcus pyogenes strain MGAS8232, section 1... 40 7.4
32dbj|AK050730.1| Mus musculus 9 days embryo whole body cDNA, RIKE... 40 7.4
33dbj|AK079329.1| Mus musculus 16 days neonate cerebellum cDNA, RI... 40 7.4
34dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
35gb|AC156550.5| Mus musculus chromosome 15, clone RP23-353K7, com... 40 7.4
36gb|AC087091.2| Homo sapiens chromosome 3 clone RP11-605M1 map 3p... 40 7.4
37gb|AE014074.1| Streptococcus pyogenes MGAS315, complete genome 40 7.4
38gb|AC160932.3| Mus musculus BAC clone RP24-275L14 from chromosom... 40 7.4
39dbj|BA000034.2| Streptococcus pyogenes SSI-1 DNA, complete genome 40 7.4
40dbj|AP005194.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
41gb|AC011609.9|AC011609 Homo sapiens 3 BAC RP11-114K9 (Roswell Pa... 40 7.4
42gb|AC005943.1|AC005943 Homo sapiens chromosome 19, cosmid R30538... 40 7.4
43gb|AC005259.1|AC005259 Mouse BAC CitbCJ7 219m7, genomic sequence... 40 7.4
44emb|AL845300.11| Mouse DNA sequence from clone RP23-397A17 on ch... 40 7.4
45emb|AL672276.9| Mouse DNA sequence from clone RP23-124L1 on chro... 40 7.4 
>ref|NM_192269.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1386

 Score =  172 bits (87), Expect = 8e-40
 Identities = 123/135 (91%)
 Strand = Plus / Minus

                                                                        
Query: 387  tctccttgaattcacttcagcagcccagctcttgccaatctctgtctggaacttgccagc 446
            |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1359 tctcctcgcattcacttcagcagcccagctcttgccaatctctgtctggaacttgccagc 1300

                                                                        
Query: 447  agtagagagaaaaaactcatctagcactttcccatgctccttctcatactctaacgcttg 506
             |||||||| || |||||||||| |||||| |||||||| |||||||| ||||  |||||
Sbjct: 1299 ggtagagaggaagaactcatctaacactttgccatgctctttctcatattctagtgcttg 1240

                           
Query: 507  aagaatcatttccac 521
            ||| |||||||||||
Sbjct: 1239 aagtatcatttccac 1225



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 522 tttatcaaaatcctttacaag 542
           |||||||||||||||||||||
Sbjct: 882 tttatcaaaatcctttacaag 862
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  103 bits (52), Expect = 6e-19
 Identities = 61/64 (95%)
 Strand = Plus / Minus

                                                                            
Query: 387      tctccttgaattcacttcagcagcccagctcttgccaatctctgtctggaacttgccagc 446
                |||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 25759810 tctcctcgcattcacttcagcagcccagctcttgccaatctctgtctggaacttgcctgc 25759751

                    
Query: 447      agta 450
                ||||
Sbjct: 25759750 agta 25759747



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 520      actttatcaaaatcctttacaag 542
                |||||||||||||||||||||||
Sbjct: 25757784 actttatcaaaatcctttacaag 25757762
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>dbj|AP003855.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0039G05
          Length = 138429

 Score =  103 bits (52), Expect = 6e-19
 Identities = 61/64 (95%)
 Strand = Plus / Minus

                                                                         
Query: 387   tctccttgaattcacttcagcagcccagctcttgccaatctctgtctggaacttgccagc 446
             |||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 62274 tctcctcgcattcacttcagcagcccagctcttgccaatctctgtctggaacttgcctgc 62215

                 
Query: 447   agta 450
             ||||
Sbjct: 62214 agta 62211



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 520   actttatcaaaatcctttacaag 542
             |||||||||||||||||||||||
Sbjct: 60248 actttatcaaaatcctttacaag 60226
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>ref|NM_102381.2| Arabidopsis thaliana catalytic AT1G26160 mRNA, complete cds
          Length = 1154

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 111/139 (79%)
 Strand = Plus / Minus

                                                                       
Query: 403 tcagcagcccagctcttgccaatctctgtctggaacttgccagcagtagagagaaaaaac 462
           |||||||||||||| || ||||| ||||| || |||||||| || || || |  ||||||
Sbjct: 765 tcagcagcccagctttttccaatttctgtttgaaacttgcctgctgttgatatgaaaaac 706

                                                                       
Query: 463 tcatctagcactttcccatgctccttctcatactctaacgcttgaagaatcatttccact 522
           || || ||||||||||| || ||    ||||| |||| ||| || |||||||| || || 
Sbjct: 705 tcgtcgagcactttcccgtgttcagcttcatattctagcgcctggagaatcatctcaacc 646

                              
Query: 523 ttatcaaaatcctttacaa 541
           |||||||| || |||||||
Sbjct: 645 ttatcaaagtcttttacaa 627
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>gb|AY113965.1| Arabidopsis thaliana unknown protein (At1g26160) mRNA, complete cds
          Length = 808

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 111/139 (79%)
 Strand = Plus / Minus

                                                                       
Query: 403 tcagcagcccagctcttgccaatctctgtctggaacttgccagcagtagagagaaaaaac 462
           |||||||||||||| || ||||| ||||| || |||||||| || || || |  ||||||
Sbjct: 731 tcagcagcccagctttttccaatttctgtttgaaacttgcctgctgttgatatgaaaaac 672

                                                                       
Query: 463 tcatctagcactttcccatgctccttctcatactctaacgcttgaagaatcatttccact 522
           || || ||||||||||| || ||    ||||| |||| ||| || |||||||| || || 
Sbjct: 671 tcgtcgagcactttcccgtgttcagcttcatattctagcgcctggagaatcatctcaacc 612

                              
Query: 523 ttatcaaaatcctttacaa 541
           |||||||| || |||||||
Sbjct: 611 ttatcaaagtcttttacaa 593
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>gb|AY056247.1| Arabidopsis thaliana unknown protein (At1g26160) mRNA, complete cds
          Length = 1171

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 111/139 (79%)
 Strand = Plus / Minus

                                                                       
Query: 403 tcagcagcccagctcttgccaatctctgtctggaacttgccagcagtagagagaaaaaac 462
           |||||||||||||| || ||||| ||||| || |||||||| || || || |  ||||||
Sbjct: 765 tcagcagcccagctttttccaatttctgtttgaaacttgcctgctgttgatatgaaaaac 706

                                                                       
Query: 463 tcatctagcactttcccatgctccttctcatactctaacgcttgaagaatcatttccact 522
           || || ||||||||||| || ||    ||||| |||| ||| || |||||||| || || 
Sbjct: 705 tcgtcgagcactttcccgtgttcagcttcatattctagcgcctggagaatcatctcaacc 646

                              
Query: 523 ttatcaaaatcctttacaa 541
           |||||||| || |||||||
Sbjct: 645 ttatcaaagtcttttacaa 627
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>emb|BX818491.1|CNS0ACOV Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL82ZA02 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1087

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 111/139 (79%)
 Strand = Plus / Minus

                                                                       
Query: 403 tcagcagcccagctcttgccaatctctgtctggaacttgccagcagtagagagaaaaaac 462
           |||||||||||||| || ||||| ||||| || |||||||| || || || |  ||||||
Sbjct: 744 tcagcagcccagctttttccaatttctgtttgaaacttgcctgctgttgatatgaaaaac 685

                                                                       
Query: 463 tcatctagcactttcccatgctccttctcatactctaacgcttgaagaatcatttccact 522
           || || ||||||||||| || ||    ||||| |||| ||| || |||||||| || || 
Sbjct: 684 tcgtcgagcactttcccgtgttcagcttcatattctagcgcctggagaatcatctcaacc 625

                              
Query: 523 ttatcaaaatcctttacaa 541
           |||||||| || |||||||
Sbjct: 624 ttatcaaagtcttttacaa 606
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>gb|AY087714.1| Arabidopsis thaliana clone 37861 mRNA, complete sequence
          Length = 1157

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 111/139 (79%)
 Strand = Plus / Minus

                                                                       
Query: 403 tcagcagcccagctcttgccaatctctgtctggaacttgccagcagtagagagaaaaaac 462
           |||||||||||||| || ||||| ||||| || |||||||| || || || |  ||||||
Sbjct: 777 tcagcagcccagctttttccaatttctgtttgaaacttgcctgctgttgatatgaaaaac 718

                                                                       
Query: 463 tcatctagcactttcccatgctccttctcatactctaacgcttgaagaatcatttccact 522
           || || ||||||||||| || ||    ||||| |||| ||| || |||||||| || || 
Sbjct: 717 tcgtcgagcactttcccgtgttcagcttcatattctagcgcctggagaatcatctcaacc 658

                              
Query: 523 ttatcaaaatcctttacaa 541
           |||||||| || |||||||
Sbjct: 657 ttatcaaagtcttttacaa 639
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>dbj|AK058557.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-D05, full
           insert sequence
          Length = 1064

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                
Query: 481 tgctccttctcatactctaacgcttgaagaatcatttccactttatcaaaatc 533
           |||||||| |||||||| || |||||||||||||| || || || ||||||||
Sbjct: 648 tgctccttttcatactccaatgcttgaagaatcatctcaaccttgtcaaaatc 596
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>emb|BX545915.7| Zebrafish DNA sequence from clone DKEY-41B16 in linkage group 3, complete
              sequence
          Length = 192468

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 512    tcatttccactttatcaaaat 532
              |||||||||||||||||||||
Sbjct: 145050 tcatttccactttatcaaaat 145030
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>gb|AC079829.6|AC079829 Arabidopsis thaliana chromosome 1 BAC F28B23 genomic sequence, complete
             sequence
          Length = 96699

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 403   tcagcagcccagctcttgccaatctctgtctggaacttgcc 443
             |||||||||||||| || ||||| ||||| || ||||||||
Sbjct: 72902 tcagcagcccagctttttccaatttctgtttgaaacttgcc 72862
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>gb|AC171010.3| Gallus gallus BAC clone CH261-161I5 from chromosome ul, complete
             sequence
          Length = 245010

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 409   gcccagctcttgccaatctct 429
             |||||||||||||||||||||
Sbjct: 25143 gcccagctcttgccaatctct 25123
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>gb|CP000017.1| Streptococcus pyogenes MGAS5005, complete genome
          Length = 1838554

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 497     ctaacgcttgaagaatcatt 516
               ||||||||||||||||||||
Sbjct: 1212023 ctaacgcttgaagaatcatt 1212004
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>gb|CP000003.1| Streptococcus pyogenes MGAS10394, complete genome
          Length = 1899877

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 497     ctaacgcttgaagaatcatt 516
               ||||||||||||||||||||
Sbjct: 1265107 ctaacgcttgaagaatcatt 1265088
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>gb|AE006586.1| Streptococcus pyogenes M1 GAS, section 115 of 167 of the complete
           genome
          Length = 11507

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 497 ctaacgcttgaagaatcatt 516
           ||||||||||||||||||||
Sbjct: 763 ctaacgcttgaagaatcatt 744
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>gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome
          Length = 1937111

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 497     ctaacgcttgaagaatcatt 516
               ||||||||||||||||||||
Sbjct: 1289357 ctaacgcttgaagaatcatt 1289338
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>gb|CP000261.1| Streptococcus pyogenes MGAS2096, complete genome
          Length = 1860355

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 497     ctaacgcttgaagaatcatt 516
               ||||||||||||||||||||
Sbjct: 1230399 ctaacgcttgaagaatcatt 1230380
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>gb|CP000260.1| Streptococcus pyogenes MGAS10270, complete genome
          Length = 1928252

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 497     ctaacgcttgaagaatcatt 516
               ||||||||||||||||||||
Sbjct: 1229472 ctaacgcttgaagaatcatt 1229453
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>gb|CP000259.1| Streptococcus pyogenes MGAS9429, complete genome
          Length = 1836467

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 497     ctaacgcttgaagaatcatt 516
               ||||||||||||||||||||
Sbjct: 1206489 ctaacgcttgaagaatcatt 1206470
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>gb|AC115843.10| Mus musculus chromosome 9, clone RP24-239P6, complete sequence
          Length = 215265

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 249   tttgttatgtttgtttgcct 268
             ||||||||||||||||||||
Sbjct: 99612 tttgttatgtttgtttgcct 99631
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>gb|AC122158.17| Mus musculus strain 129/Sv clone ct7-433o3 map 15, complete sequence
          Length = 135612

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 23    cagcccccagcctgcctttttatt 46
             |||| |||||||||||||||||||
Sbjct: 64546 cagctcccagcctgcctttttatt 64523
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>gb|AC119847.12| Mus musculus chromosome 3, clone RP23-46L5, complete sequence
          Length = 227081

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    ccccagcctgcctttttatt 46
             ||||||||||||||||||||
Sbjct: 77719 ccccagcctgcctttttatt 77700
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>gb|AC133892.9| Mus musculus chromosome 1, clone RP23-279J5, complete sequence
          Length = 163620

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 434   ggaacttgccagcagtagagagaaaaaa 461
             ||||||||||||||| || |||||||||
Sbjct: 11095 ggaacttgccagcaggagtgagaaaaaa 11122
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>gb|CP000056.1| Streptococcus pyogenes MGAS6180, complete genome
          Length = 1897573

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 497     ctaacgcttgaagaatcatt 516
               ||||||||||||||||||||
Sbjct: 1201888 ctaacgcttgaagaatcatt 1201869
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>gb|AC132859.11| Mus musculus chromosome 1, clone RP24-389O14, complete sequence
          Length = 128305

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 434   ggaacttgccagcagtagagagaaaaaa 461
             ||||||||||||||| || |||||||||
Sbjct: 96525 ggaacttgccagcaggagtgagaaaaaa 96552
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>emb|AL391728.19| Human DNA sequence from clone RP11-423A18 on chromosome 1 Contains part
             of gene KIAA1365 and the PIN1L gene for protein
             (peptidyl-prolyl cis/trans isomerase) NIMA-interacting
             1-like, complete sequence
          Length = 153750

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    cccagcctgcctttttattt 47
             ||||||||||||||||||||
Sbjct: 70245 cccagcctgcctttttattt 70226
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>emb|AL049596.15|HSJ300A12 Human DNA sequence from clone RP1-300A12 on chromosome 1q24.1-24.3
             Contains STSs and GSSs, complete sequence
          Length = 56854

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 41    tttatttccccgactcaaga 60
             ||||||||||||||||||||
Sbjct: 31931 tttatttccccgactcaaga 31950
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>emb|CR293508.9| Zebrafish DNA sequence from clone CH211-13K20 in linkage group 15,
              complete sequence
          Length = 168933

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 243    ggcaaatttgttatgtttgt 262
              ||||||||||||||||||||
Sbjct: 108436 ggcaaatttgttatgtttgt 108455
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>emb|CR378665.1| Photobacterium profundum SS9; segment 3/12
          Length = 347213

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 496    tctaacgcttgaagaatcatttccactt 523
              ||||| |||||| |||||||||||||||
Sbjct: 319907 tctaatgcttgacgaatcatttccactt 319880
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>emb|AL954353.14| Mouse DNA sequence from clone RP23-156D8 on chromosome 11 Contains a
             pseudogene similar to part of striatin (calmodulin binding
             protein) (Strn), complete sequence
          Length = 188920

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 245   caaatttgttatgtttgttt 264
             ||||||||||||||||||||
Sbjct: 49581 caaatttgttatgtttgttt 49600
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>gb|AE010069.1| Streptococcus pyogenes strain MGAS8232, section 117 of 173 of the
           complete genome
          Length = 11465

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 497 ctaacgcttgaagaatcatt 516
           ||||||||||||||||||||
Sbjct: 722 ctaacgcttgaagaatcatt 703
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>dbj|AK050730.1| Mus musculus 9 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:D030012B17
           product:unclassifiable, full insert sequence
          Length = 1178

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 27  ccccagcctgcctttttatt 46
           ||||||||||||||||||||
Sbjct: 257 ccccagcctgcctttttatt 276
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>dbj|AK079329.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:9630025H16
            product:unclassifiable, full insert sequence
          Length = 2438

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 27   ccccagcctgcctttttatt 46
            ||||||||||||||||||||
Sbjct: 1171 ccccagcctgcctttttatt 1190
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 440     tgccagcagtagagagaaaa 459
               ||||||||||||||||||||
Sbjct: 7671937 tgccagcagtagagagaaaa 7671918
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>gb|AC156550.5| Mus musculus chromosome 15, clone RP23-353K7, complete sequence
          Length = 205302

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 23    cagcccccagcctgcctttttatt 46
             |||| |||||||||||||||||||
Sbjct: 17887 cagctcccagcctgcctttttatt 17910
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>gb|AC087091.2| Homo sapiens chromosome 3 clone RP11-605M1 map 3p, complete sequence
          Length = 153013

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 306   acaacccatcatgaaaattt 325
             ||||||||||||||||||||
Sbjct: 87528 acaacccatcatgaaaattt 87547
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>gb|AE014074.1| Streptococcus pyogenes MGAS315, complete genome
          Length = 1900521

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 497     ctaacgcttgaagaatcatt 516
               ||||||||||||||||||||
Sbjct: 1205091 ctaacgcttgaagaatcatt 1205072
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>gb|AC160932.3| Mus musculus BAC clone RP24-275L14 from chromosome 12, complete sequence
          Length = 177886

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 456    aaaaaactcatctagcactt 475
              ||||||||||||||||||||
Sbjct: 151323 aaaaaactcatctagcactt 151304
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>dbj|BA000034.2| Streptococcus pyogenes SSI-1 DNA, complete genome
          Length = 1894275

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 497    ctaacgcttgaagaatcatt 516
              ||||||||||||||||||||
Sbjct: 691793 ctaacgcttgaagaatcatt 691812
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>dbj|AP005194.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0565A07
          Length = 152191

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 440   tgccagcagtagagagaaaa 459
             ||||||||||||||||||||
Sbjct: 16026 tgccagcagtagagagaaaa 16007
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>gb|AC011609.9|AC011609 Homo sapiens 3 BAC RP11-114K9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 184680

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 306   acaacccatcatgaaaattt 325
             ||||||||||||||||||||
Sbjct: 75632 acaacccatcatgaaaattt 75651
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>gb|AC005943.1|AC005943 Homo sapiens chromosome 19, cosmid R30538, complete sequence
          Length = 42301

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 411   ccagctcttgccaatctctg 430
             ||||||||||||||||||||
Sbjct: 37754 ccagctcttgccaatctctg 37735
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>gb|AC005259.1|AC005259 Mouse BAC CitbCJ7 219m7, genomic sequence, complete sequence
          Length = 124230

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                         
Query: 240   tgaggcaaatttgtt-atgtttgtttgc 266
             ||||||||||||||| ||||||||||||
Sbjct: 52466 tgaggcaaatttgttgatgtttgtttgc 52493
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>emb|AL845300.11| Mouse DNA sequence from clone RP23-397A17 on chromosome 2, complete
             sequence
          Length = 224818

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    gaacagcccccagcctgcct 39
             ||||||||||||||||||||
Sbjct: 79078 gaacagcccccagcctgcct 79097
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>emb|AL672276.9| Mouse DNA sequence from clone RP23-124L1 on chromosome 4, complete
              sequence
          Length = 208030

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                          
Query: 240    tgaggcaaatttgtt-atgtttgtttgc 266
              ||||||||||||||| ||||||||||||
Sbjct: 152193 tgaggcaaatttgttgatgtttgtttgc 152166


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,623,074
Number of Sequences: 3902068
Number of extensions: 5623074
Number of successful extensions: 106298
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 106054
Number of HSP's gapped (non-prelim): 246
length of query: 543
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 520
effective length of database: 17,143,297,704
effective search space: 8914514806080
effective search space used: 8914514806080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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