ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart29a11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYFA_NITMU (Q2YBS2) Phenylalanyl-tRNA synthetase alpha chain (EC... 30 5.3

>SYFA_NITMU (Q2YBS2) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase alpha chain) (PheRS)
          Length = 344

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 139 PQAHEVTRMSNTFQVKEENNNLSPAYRRQHTVP 237
           P++H    M +TF V +EN   S    R HT P
Sbjct: 146 PESHPARAMHDTFYVDDENGGASEHLLRTHTSP 178


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,545,401
Number of Sequences: 219361
Number of extensions: 980675
Number of successful extensions: 2538
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2538
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4027872870
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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