ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart29a10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 432 e-118
2dbj|AP003985.4| Oryza sativa (japonica cultivar-group) genomic D... 432 e-118
3ref|XM_478924.1| Oryza sativa (japonica cultivar-group), mRNA 430 e-117
4gb|AY112124.1| Zea mays CL27759_1 mRNA sequence 291 1e-75
5dbj|AP006373.1| Lotus japonicus genomic DNA, chromosome 3, clone... 115 1e-22
6gb|BT014331.1| Lycopersicon esculentum clone 133604F, mRNA sequence 60 7e-06
7ref|NM_106167.2| Arabidopsis thaliana unknown protein AT1G75110 ... 50 0.007
8gb|AY102148.1| Arabidopsis thaliana At1g75110/F9E10_4 mRNA, comp... 50 0.007
9gb|AY039531.1| Arabidopsis thaliana At1g75110/F9E10_4 mRNA, comp... 50 0.007
10emb|BX815189.1|CNS0AAUZ Arabidopsis thaliana Full-length cDNA Co... 50 0.007
11gb|AC013258.5|AC013258 Arabidopsis thaliana chromosome 1 BAC F9E... 50 0.007
12gb|AY086542.1| Arabidopsis thaliana clone 256769 mRNA, complete ... 50 0.007
13gb|AC009192.72| Mus musculus strain 129/Sv clone ct7-555d9 map 6... 48 0.028
14gb|AC012397.33| Mus musculus strain 129/Sv clone ct7-369p18 map ... 48 0.028
15gb|AC084273.20| Mus musculus strain C57BL/6J chromosome 6 clone ... 48 0.028
16ref|XM_792458.1| PREDICTED: Strongylocentrotus purpuratus simila... 46 0.11
17emb|AL772159.12| Mouse DNA sequence from clone RP23-107H15 on ch... 44 0.44
18ref|NM_101793.2| Arabidopsis thaliana unknown protein AT1G19360 ... 42 1.7
19gb|AY376636.1| Mus musculus lipolysis stimulated receptor (Lsr) ... 42 1.7
20gb|AC123852.4| Mus musculus BAC clone RP23-326G23 from chromosom... 42 1.7
21emb|AL162615.13| Human DNA sequence from clone RP5-1041C10 on ch... 42 1.7
22emb|CR385206.1| Gallus gallus finished cDNA, clone ChEST539k14 42 1.7
23gb|AC149055.6| Mus musculus BAC clone RP23-358K1 from chromosome... 42 1.7
24gb|AC025808.8|AC025808 Genomic sequence for Arabidopsis thaliana... 42 1.7
25gb|AY088117.1| Arabidopsis thaliana clone 41461 mRNA, complete s... 42 1.7
26gb|AC150424.3| Branchiostoma floridae clone CH302-7J16, complete... 40 6.9
27ref|XM_631450.1| Dictyostelium discoideum hypothetical protein (... 40 6.9
28gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 6.9
29gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 6.9
30gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.9
31gb|AC149473.33| Medicago truncatula clone mth2-119h6, complete s... 40 6.9
32gb|AC018545.14| Homo sapiens 3 BAC RP11-145F16 (Roswell Park Can... 40 6.9
33gb|AC124586.3| Mus musculus BAC clone RP23-132E20 from 12, compl... 40 6.9
34gb|AC139190.1| Pan troglodytes BAC clone RP43-12I19 from Y, comp... 40 6.9
35gb|AC154352.2| Mus musculus BAC clone RP24-545J11 from chromosom... 40 6.9
36gb|AC155341.1| Brassica rapa subsp. pekinensis chromosome 6 clon... 40 6.9
37emb|CR628336.1| Legionella pneumophila str. Paris complete genome 40 6.9
38gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, co... 40 6.9
39dbj|BS000606.1| Pan troglodytes chromosome Y clone:PTBY-009G03, ... 40 6.9
40dbj|BS000551.1| Pan troglodytes chromosome Y clone:PTB-295A05, c... 40 6.9
41gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 6.9
42gb|AC097515.5| Homo sapiens BAC clone RP11-446J8 from 4, complet... 40 6.9
43gb|AC096690.5| Oryza sativa chromosome 3 BAC OSJNBa0059G06 genom... 40 6.9
44dbj|AK042710.1| Mus musculus 7 days neonate cerebellum cDNA, RIK... 40 6.9
45gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, com... 40 6.9
46dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
47gb|AC009233.3|AC009233 Homo sapiens BAC clone RP11-356K22 from Y... 40 6.9
48dbj|AP005172.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
49emb|AL732429.11| Mouse DNA sequence from clone RP23-89N11 on chr... 40 6.9
50dbj|AP003797.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
51dbj|AP000943.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 6.9 
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  432 bits (218), Expect = e-118
 Identities = 320/354 (90%)
 Strand = Plus / Plus

                                                                            
Query: 158      ttatcattctgatccatcagggaaatgatcaagtgcattctgctttccatgaacataaaa 217
                |||| |||||||||||||||| ||||| |||||||||||||| |||||||  || |||||
Sbjct: 23834837 ttattattctgatccatcaggaaaatgttcaagtgcattctgttttccattgacgtaaaa 23834896

                                                                            
Query: 218      ctcaatcactgctttcatgcgcgcctccttatcaggatggtagttcaaatgcacgatcac 277
                |||||||||||||||||||||  ||  ||||||||||||||| ||||| ||||| |||||
Sbjct: 23834897 ctcaatcactgctttcatgcgttccgacttatcaggatggtaattcaagtgcacaatcac 23834956

                                                                            
Query: 278      tggcttcaacttccgcagttgagcacttttcctcactgtcttgaagagaactttgctgtt 337
                |||||||||||||||||| | ||||  ||||||||| |||||||| ||||||||||||||
Sbjct: 23834957 tggcttcaacttccgcagattagcatctttcctcacagtcttgaatagaactttgctgtt 23835016

                                                                            
Query: 338      cataaagagatatatatccatggttcttttggatgcatgtagaccttcataaccaggatg 397
                ||||||  | ||||||||||||||||||||||||  ||| |||||||||||||| |||||
Sbjct: 23835017 cataaattggtatatatccatggttcttttggatatatggagaccttcataacctggatg 23835076

                                                                            
Query: 398      tgaggggaaaaacagttcctcattaaaaacagcctggtcccatgatttgggttcacgaga 457
                ||||||||| |||||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct: 23835077 tgaggggaagaacagttcctcattgaaaacagcttgatcccatgatttgggttcacgaga 23835136

                                                                      
Query: 458      aaggcgaccagctaccctatccaaaagctcaattgaaggaattgttggccttat 511
                |||||| |||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 23835137 aaggcggccagctactctatccaaaagctcaatagaaggaattgttggccttat 23835190



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 464      accagctaccctatccaaaa 483
                ||||||||||||||||||||
Sbjct: 10030591 accagctaccctatccaaaa 10030572
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>dbj|AP003985.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1047_C01
          Length = 97427

 Score =  432 bits (218), Expect = e-118
 Identities = 320/354 (90%)
 Strand = Plus / Plus

                                                                         
Query: 158   ttatcattctgatccatcagggaaatgatcaagtgcattctgctttccatgaacataaaa 217
             |||| |||||||||||||||| ||||| |||||||||||||| |||||||  || |||||
Sbjct: 23337 ttattattctgatccatcaggaaaatgttcaagtgcattctgttttccattgacgtaaaa 23396

                                                                         
Query: 218   ctcaatcactgctttcatgcgcgcctccttatcaggatggtagttcaaatgcacgatcac 277
             |||||||||||||||||||||  ||  ||||||||||||||| ||||| ||||| |||||
Sbjct: 23397 ctcaatcactgctttcatgcgttccgacttatcaggatggtaattcaagtgcacaatcac 23456

                                                                         
Query: 278   tggcttcaacttccgcagttgagcacttttcctcactgtcttgaagagaactttgctgtt 337
             |||||||||||||||||| | ||||  ||||||||| |||||||| ||||||||||||||
Sbjct: 23457 tggcttcaacttccgcagattagcatctttcctcacagtcttgaatagaactttgctgtt 23516

                                                                         
Query: 338   cataaagagatatatatccatggttcttttggatgcatgtagaccttcataaccaggatg 397
             ||||||  | ||||||||||||||||||||||||  ||| |||||||||||||| |||||
Sbjct: 23517 cataaattggtatatatccatggttcttttggatatatggagaccttcataacctggatg 23576

                                                                         
Query: 398   tgaggggaaaaacagttcctcattaaaaacagcctggtcccatgatttgggttcacgaga 457
             ||||||||| |||||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct: 23577 tgaggggaagaacagttcctcattgaaaacagcttgatcccatgatttgggttcacgaga 23636

                                                                   
Query: 458   aaggcgaccagctaccctatccaaaagctcaattgaaggaattgttggccttat 511
             |||||| |||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 23637 aaggcggccagctactctatccaaaagctcaatagaaggaattgttggccttat 23690
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>ref|XM_478924.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1281

 Score =  430 bits (217), Expect = e-117
 Identities = 316/349 (90%)
 Strand = Plus / Minus

                                                                        
Query: 163  attctgatccatcagggaaatgatcaagtgcattctgctttccatgaacataaaactcaa 222
            |||||||||||||||| ||||| |||||||||||||| |||||||  || ||||||||||
Sbjct: 1279 attctgatccatcaggaaaatgttcaagtgcattctgttttccattgacgtaaaactcaa 1220

                                                                        
Query: 223  tcactgctttcatgcgcgcctccttatcaggatggtagttcaaatgcacgatcactggct 282
            ||||||||||||||||  ||  ||||||||||||||| ||||| ||||| ||||||||||
Sbjct: 1219 tcactgctttcatgcgttccgacttatcaggatggtaattcaagtgcacaatcactggct 1160

                                                                        
Query: 283  tcaacttccgcagttgagcacttttcctcactgtcttgaagagaactttgctgttcataa 342
            ||||||||||||| | ||||  ||||||||| |||||||| |||||||||||||||||||
Sbjct: 1159 tcaacttccgcagattagcatctttcctcacagtcttgaatagaactttgctgttcataa 1100

                                                                        
Query: 343  agagatatatatccatggttcttttggatgcatgtagaccttcataaccaggatgtgagg 402
            |  | ||||||||||||||||||||||||  ||| |||||||||||||| ||||||||||
Sbjct: 1099 attggtatatatccatggttcttttggatatatggagaccttcataacctggatgtgagg 1040

                                                                        
Query: 403  ggaaaaacagttcctcattaaaaacagcctggtcccatgatttgggttcacgagaaaggc 462
            |||| |||||||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct: 1039 ggaagaacagttcctcattgaaaacagcttgatcccatgatttgggttcacgagaaaggc 980

                                                             
Query: 463  gaccagctaccctatccaaaagctcaattgaaggaattgttggccttat 511
            | |||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 979  ggccagctactctatccaaaagctcaatagaaggaattgttggccttat 931
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>gb|AY112124.1| Zea mays CL27759_1 mRNA sequence
          Length = 1076

 Score =  291 bits (147), Expect = 1e-75
 Identities = 300/353 (84%)
 Strand = Plus / Plus

                                                                       
Query: 159 tatcattctgatccatcagggaaatgatcaagtgcattctgctttccatgaacataaaac 218
           |||||||||||||||||||||||  | ||||| |||||||| || || | ||||||||| 
Sbjct: 243 tatcattctgatccatcagggaagcgttcaagggcattctgtttcccgttaacataaaat 302

                                                                       
Query: 219 tcaatcactgctttcatgcgcgcctccttatcaggatggtagttcaaatgcacgatcact 278
           ||||||||||||||||||||  ||  |||||| |||||||||||||||||||| | ||| 
Sbjct: 303 tcaatcactgctttcatgcgatccgacttatctggatggtagttcaaatgcacaaccacc 362

                                                                       
Query: 279 ggcttcaacttccgcagttgagcacttttcctcactgtcttgaagagaactttgctgttc 338
           |||||||| |||||||| | ||||  ||||||||| |||||||| |||||||| ||| ||
Sbjct: 363 ggcttcaaattccgcagataagcatctttcctcaccgtcttgaaaagaactttactggtc 422

                                                                       
Query: 339 ataaagagatatatatccatggttcttttggatgcatgtagaccttcataaccaggatgt 398
           || || || || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 423 atgaaaaggtagatatccatggttcttttggatgcatgaagaccttcataaccaggatgt 482

                                                                       
Query: 399 gaggggaaaaacagttcctcattaaaaacagcctggtcccatgatttgggttcacgagaa 458
           |||||      ||| |||||||| ||||| || ||||||||||||||||| ||| |||||
Sbjct: 483 gagggnnnnnncagctcctcattgaaaactgcttggtcccatgatttgggctcatgagaa 542

                                                                
Query: 459 aggcgaccagctaccctatccaaaagctcaattgaaggaattgttggccttat 511
           ||||||  ||| |||||  | | ||||||||| |||||||| || ||||||||
Sbjct: 543 aggcgataagcaaccctggcaagaagctcaatcgaaggaatcgtcggccttat 595
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>dbj|AP006373.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT09C16, TM0217,
             complete sequence
          Length = 79116

 Score =  115 bits (58), Expect = 1e-22
 Identities = 115/134 (85%)
 Strand = Plus / Minus

                                                                         
Query: 306   ttcctcactgtcttgaagagaactttgctgttcataaagagatatatatccatggttctt 365
             ||||||||||||||||| ||||| ||||||||||| |||||||| |||||||||||||||
Sbjct: 60759 ttcctcactgtcttgaacagaaccttgctgttcatgaagagatacatatccatggttctt 60700

                                                                         
Query: 366   ttggatgcatgtagaccttcataaccaggatgtgaggggaaaaacagttcctcattaaaa 425
              |||  ||||| || || |||||||| || || |||||| |||| |||||||| || |||
Sbjct: 60699 ctggcagcatgaagtccatcataacccgggtgcgaggggtaaaagagttcctcgttgaaa 60640

                           
Query: 426   acagcctggtccca 439
             || ||||| |||||
Sbjct: 60639 acggcctgatccca 60626
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>gb|BT014331.1| Lycopersicon esculentum clone 133604F, mRNA sequence
          Length = 1528

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 96/118 (81%)
 Strand = Plus / Minus

                                                                        
Query: 390  ccaggatgtgaggggaaaaacagttcctcattaaaaacagcctggtcccatgatttgggt 449
            ||||||||||| || |||  ||| || ||||| ||||| ||||||||||| || || || 
Sbjct: 1080 ccaggatgtgatggaaaagccagctcttcattgaaaactgcctggtcccaggaatttggc 1021

                                                                      
Query: 450  tcacgagaaaggcgaccagctaccctatccaaaagctcaattgaaggaattgttggcc 507
            | |  || ||| ||| |||| |||| ||| || |||||||||||||||||||||||||
Sbjct: 1020 tgagtagtaagccgatcagcaacccgatctaagagctcaattgaaggaattgttggcc 963
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>ref|NM_106167.2| Arabidopsis thaliana unknown protein AT1G75110 mRNA, complete cds
          Length = 1568

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                         
Query: 246  ttatcaggatggtagttcaaatgcacgatcactggcttcaacttc 290
            ||||| |||||||| || | |||||| ||||||||||||||||||
Sbjct: 1250 ttatctggatggtaattgagatgcacaatcactggcttcaacttc 1206
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>gb|AY102148.1| Arabidopsis thaliana At1g75110/F9E10_4 mRNA, complete cds
          Length = 1287

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                         
Query: 246  ttatcaggatggtagttcaaatgcacgatcactggcttcaacttc 290
            ||||| |||||||| || | |||||| ||||||||||||||||||
Sbjct: 1202 ttatctggatggtaattgagatgcacaatcactggcttcaacttc 1158
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>gb|AY039531.1| Arabidopsis thaliana At1g75110/F9E10_4 mRNA, complete cds
          Length = 1568

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                         
Query: 246  ttatcaggatggtagttcaaatgcacgatcactggcttcaacttc 290
            ||||| |||||||| || | |||||| ||||||||||||||||||
Sbjct: 1250 ttatctggatggtaattgagatgcacaatcactggcttcaacttc 1206
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>emb|BX815189.1|CNS0AAUZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS40ZB01 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1536

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                         
Query: 246  ttatcaggatggtagttcaaatgcacgatcactggcttcaacttc 290
            ||||| |||||||| || | |||||| ||||||||||||||||||
Sbjct: 1227 ttatctggatggtaattgagatgcacaatcactggcttcaacttc 1183
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>gb|AC013258.5|AC013258 Arabidopsis thaliana chromosome 1 BAC F9E10 genomic sequence,
            complete sequence
          Length = 97263

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                         
Query: 246  ttatcaggatggtagttcaaatgcacgatcactggcttcaacttc 290
            ||||| |||||||| || | |||||| ||||||||||||||||||
Sbjct: 8934 ttatctggatggtaattgagatgcacaatcactggcttcaacttc 8890
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>gb|AY086542.1| Arabidopsis thaliana clone 256769 mRNA, complete sequence
          Length = 1496

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                         
Query: 246  ttatcaggatggtagttcaaatgcacgatcactggcttcaacttc 290
            ||||| |||||||| || | |||||| ||||||||||||||||||
Sbjct: 1213 ttatctggatggtaattgagatgcacaatcactggcttcaacttc 1169
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>gb|AC009192.72| Mus musculus strain 129/Sv clone ct7-555d9 map 6, complete sequence
          Length = 120530

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 18    atctcaagcacaatgttccaaaat 41
             ||||||||||||||||||||||||
Sbjct: 59253 atctcaagcacaatgttccaaaat 59230
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>gb|AC012397.33| Mus musculus strain 129/Sv clone ct7-369p18 map 6, complete sequence
          Length = 140198

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 18     atctcaagcacaatgttccaaaat 41
              ||||||||||||||||||||||||
Sbjct: 103111 atctcaagcacaatgttccaaaat 103088
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>gb|AC084273.20| Mus musculus strain C57BL/6J chromosome 6 clone rp23-313e8, complete
             sequence
          Length = 182818

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 18    atctcaagcacaatgttccaaaat 41
             ||||||||||||||||||||||||
Sbjct: 21089 atctcaagcacaatgttccaaaat 21066
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>ref|XM_792458.1| PREDICTED: Strongylocentrotus purpuratus similar to zn-finger, CCHC
            type and RNA-directed DNA polymerase  and Integrase,
            catalytic domain containing protein (3J949) (LOC592960),
            mRNA
          Length = 4695

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 451  cacgagaaaggcgaccagctacc 473
            |||||||||||||||||||||||
Sbjct: 4646 cacgagaaaggcgaccagctacc 4668
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>emb|AL772159.12| Mouse DNA sequence from clone RP23-107H15 on chromosome 2, complete
             sequence
          Length = 188816

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 100   aatggataacagcaagaaaacaagta 125
             ||||||||||| ||||||||||||||
Sbjct: 20360 aatggataacatcaagaaaacaagta 20335
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>ref|NM_101793.2| Arabidopsis thaliana unknown protein AT1G19360 mRNA, complete cds
          Length = 1762

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                        
Query: 315  gtcttgaagagaactttgctgttcataaagagatatatatccatggttcttttggatgca 374
            |||||||| || || || |||||||||||   ||| |||||||||  ||| |||||||||
Sbjct: 1389 gtcttgaaaaggaccttactgttcataaactcatacatatccatgactctcttggatgca 1330

                 
Query: 375  tgtag 379
            |||||
Sbjct: 1329 tgtag 1325



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                             
Query: 391  caggatgtgaggggaaaaacagttcctcattaaaaacagcctggtccca 439
            |||||||||| ||  ||||||||||||| || ||||| || ||||||||
Sbjct: 1313 caggatgtgaaggataaaacagttcctcgttgaaaaccgcttggtccca 1265
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>gb|AY376636.1| Mus musculus lipolysis stimulated receptor (Lsr) gene, exons 1 through
             9 and partial cds
          Length = 18872

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 104   gataacagcaagaaaacaagt 124
             |||||||||||||||||||||
Sbjct: 11474 gataacagcaagaaaacaagt 11494
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>gb|AC123852.4| Mus musculus BAC clone RP23-326G23 from chromosome 6, complete sequence
          Length = 195925

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 156    gtttatcattctgatccatcagggaaatg 184
              ||||| |||||| ||||||||||||||||
Sbjct: 112483 gtttaacattcttatccatcagggaaatg 112455
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>emb|AL162615.13| Human DNA sequence from clone RP5-1041C10 on chromosome 20 Contains the
              5' end of the B4GALT5 gene for UDP-Gal:betaGlcNAc beta
              1,4-galactosyltransferase polypeptide 5, b, the SNRPFP1
              gene for small nuclear ribonucleoprotein polypeptide F
              pseudogene 1, a cytokine-like nuclear factor n-pac (N-PAC)
              pseudogene, the 5' end of the SLC9A8 gene for solute
              carrier family 9 (sodium/hydrogen exchanger) isoform 8 and
              two CpG islands, complete sequence
          Length = 140092

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 420    ttaaaaacagcctggtcccat 440
              |||||||||||||||||||||
Sbjct: 137528 ttaaaaacagcctggtcccat 137548
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>emb|CR385206.1| Gallus gallus finished cDNA, clone ChEST539k14
          Length = 1280

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 406 aaaacagttcctcattaaaaa 426
           |||||||||||||||||||||
Sbjct: 175 aaaacagttcctcattaaaaa 195
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>gb|AC149055.6| Mus musculus BAC clone RP23-358K1 from chromosome 7, complete sequence
          Length = 215193

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 104    gataacagcaagaaaacaagt 124
              |||||||||||||||||||||
Sbjct: 102580 gataacagcaagaaaacaagt 102600
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>gb|AC025808.8|AC025808 Genomic sequence for Arabidopsis thaliana BAC F18O14 from chromosome I,
             complete sequence
          Length = 120977

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                              
Query: 391   caggatgtgaggggaaaaacagttcctcattaaaaacagcctggtccca 439
             |||||||||| ||  ||||||||||||| || ||||| || ||||||||
Sbjct: 24101 caggatgtgaaggataaaacagttcctcgttgaaaaccgcttggtccca 24149



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                         
Query: 315   gtcttgaagagaactttgctgttcataaagagatatatatccatggttcttttggatgca 374
             |||||||| || || || |||||||||||   ||| |||||||||  ||| |||||||||
Sbjct: 24025 gtcttgaaaaggaccttactgttcataaactcatacatatccatgactctcttggatgca 24084

                  
Query: 375   tgtag 379
             |||||
Sbjct: 24085 tgtag 24089
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>gb|AY088117.1| Arabidopsis thaliana clone 41461 mRNA, complete sequence
          Length = 1674

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                        
Query: 315  gtcttgaagagaactttgctgttcataaagagatatatatccatggttcttttggatgca 374
            |||||||| || || || |||||||||||   ||| |||||||||  ||| |||||||||
Sbjct: 1345 gtcttgaaaaggaccttactgttcataaactcatacatatccatgactctcttggatgca 1286

                 
Query: 375  tgtag 379
            |||||
Sbjct: 1285 tgtag 1281



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                             
Query: 391  caggatgtgaggggaaaaacagttcctcattaaaaacagcctggtccca 439
            |||||||||| ||  ||||||||||||| || ||||| || ||||||||
Sbjct: 1269 caggatgtgaaggataaaacagttcctcgttgaaaaccgcttggtccca 1221
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>gb|AC150424.3| Branchiostoma floridae clone CH302-7J16, complete sequence
          Length = 154657

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 156    gtttatcattctgatccatc 175
              ||||||||||||||||||||
Sbjct: 124711 gtttatcattctgatccatc 124730
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>ref|XM_631450.1| Dictyostelium discoideum hypothetical protein (DDB0188129), partial
           mRNA
          Length = 951

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 207 tgaacataaaactcaatcac 226
           ||||||||||||||||||||
Sbjct: 426 tgaacataaaactcaatcac 445
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>gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete
              sequence
          Length = 1438950

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 131    atttgctgtttcctaataag 150
              ||||||||||||||||||||
Sbjct: 947280 atttgctgtttcctaataag 947261
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>gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 3, complete
               sequence
          Length = 2105742

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 85      cagagtttcaagaacaatgg 104
               ||||||||||||||||||||
Sbjct: 1952634 cagagtttcaagaacaatgg 1952615
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 464      accagctaccctatccaaaa 483
                ||||||||||||||||||||
Sbjct: 35906477 accagctaccctatccaaaa 35906458
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>gb|AC149473.33| Medicago truncatula clone mth2-119h6, complete sequence
          Length = 128535

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 101    atggataacagcaagaaaac 120
              ||||||||||||||||||||
Sbjct: 119136 atggataacagcaagaaaac 119117
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>gb|AC018545.14| Homo sapiens 3 BAC RP11-145F16 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 170359

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 341  aaagagatatatatccatgg 360
            ||||||||||||||||||||
Sbjct: 4870 aaagagatatatatccatgg 4851
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>gb|AC124586.3| Mus musculus BAC clone RP23-132E20 from 12, complete sequence
          Length = 188243

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 100   aatggataacagcaagaaaacaag 123
             |||||| |||||||||||||||||
Sbjct: 94379 aatggagaacagcaagaaaacaag 94402
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>gb|AC139190.1| Pan troglodytes BAC clone RP43-12I19 from Y, complete sequence
          Length = 159298

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 189   agtgcattctgctttccatg 208
             ||||||||||||||||||||
Sbjct: 46751 agtgcattctgctttccatg 46770
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>gb|AC154352.2| Mus musculus BAC clone RP24-545J11 from chromosome 13, complete sequence
          Length = 199388

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 176    agggaaatgatcaagtgcat 195
              ||||||||||||||||||||
Sbjct: 131566 agggaaatgatcaagtgcat 131547
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>gb|AC155341.1| Brassica rapa subsp. pekinensis chromosome 6 clone KBrH004D11, complete
             sequence
          Length = 106476

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    agagtttcaagaacaatgga 105
             ||||||||||||||||||||
Sbjct: 19104 agagtttcaagaacaatgga 19085
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>emb|CR628336.1| Legionella pneumophila str. Paris complete genome
          Length = 3503610

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 37      aaaattatcatgtattgttt 56
               ||||||||||||||||||||
Sbjct: 1530254 aaaattatcatgtattgttt 1530273
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>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence
          Length = 161308

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 186    tcaagtgcattctgctttcc 205
              ||||||||||||||||||||
Sbjct: 138493 tcaagtgcattctgctttcc 138512
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>dbj|BS000606.1| Pan troglodytes chromosome Y clone:PTBY-009G03, complete sequences
          Length = 113454

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 189    agtgcattctgctttccatg 208
              ||||||||||||||||||||
Sbjct: 103221 agtgcattctgctttccatg 103240
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>dbj|BS000551.1| Pan troglodytes chromosome Y clone:PTB-295A05, complete sequences
          Length = 161601

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 189 agtgcattctgctttccatg 208
           ||||||||||||||||||||
Sbjct: 230 agtgcattctgctttccatg 249
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 189      agtgcattctgctttccatg 208
                ||||||||||||||||||||
Sbjct: 15507653 agtgcattctgctttccatg 15507634
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>gb|AC097515.5| Homo sapiens BAC clone RP11-446J8 from 4, complete sequence
          Length = 165973

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 205  catgaacataaaactcaatc 224
            ||||||||||||||||||||
Sbjct: 9896 catgaacataaaactcaatc 9915
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>gb|AC096690.5| Oryza sativa chromosome 3 BAC OSJNBa0059G06 genomic sequence, complete
             sequence
          Length = 145115

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 464   accagctaccctatccaaaa 483
             ||||||||||||||||||||
Sbjct: 54648 accagctaccctatccaaaa 54667
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>dbj|AK042710.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:A730018A19
            product:unclassifiable, full insert sequence
          Length = 3012

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 100  aatggataacagcaagaaaacaag 123
            |||||| |||||||||||||||||
Sbjct: 2244 aatggagaacagcaagaaaacaag 2221
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>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence
          Length = 125424

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 186   tcaagtgcattctgctttcc 205
             ||||||||||||||||||||
Sbjct: 94905 tcaagtgcattctgctttcc 94886
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 464      accagctaccctatccaaaa 483
                ||||||||||||||||||||
Sbjct: 35996607 accagctaccctatccaaaa 35996588
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>gb|AC009233.3|AC009233 Homo sapiens BAC clone RP11-356K22 from Y, complete sequence
          Length = 195439

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 189    agtgcattctgctttccatg 208
              ||||||||||||||||||||
Sbjct: 105872 agtgcattctgctttccatg 105891
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>dbj|AP005172.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OSJNBb0002J01
          Length = 130152

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 464  accagctaccctatccaaaa 483
            ||||||||||||||||||||
Sbjct: 3267 accagctaccctatccaaaa 3248
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>emb|AL732429.11| Mouse DNA sequence from clone RP23-89N11 on chromosome X, complete
              sequence
          Length = 164991

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 424    aaacagcctggtcccatgat 443
              ||||||||||||||||||||
Sbjct: 147754 aaacagcctggtcccatgat 147773
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>dbj|AP003797.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1001_C01
          Length = 90750

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 464   accagctaccctatccaaaa 483
             ||||||||||||||||||||
Sbjct: 62240 accagctaccctatccaaaa 62221
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>dbj|AP000943.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-867G2, complete
             sequence
          Length = 192299

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 475   tatccaaaagctcaattgaaggaa 498
             ||||||||||||||||| ||||||
Sbjct: 19628 tatccaaaagctcaattcaaggaa 19605


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,183,164
Number of Sequences: 3902068
Number of extensions: 5183164
Number of successful extensions: 97983
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97731
Number of HSP's gapped (non-prelim): 251
length of query: 511
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 488
effective length of database: 17,143,297,704
effective search space: 8365929279552
effective search space used: 8365929279552
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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