>PAP2_HUMAN (Q9BXP8) Pappalysin-2 precursor (EC 3.4.24.-) (Pregnancy-associated|
            plasma protein-A2) (PAPP-A2) (Pregnancy-associated plasma
            protein-E1) (PAPP-E)
          Length = 1791

 Score = 32.0 bits (71), Expect = 0.38
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -2

Query: 355  DHGRRRLRVQALLRGRRRLTHPSPIILHCVAS 260
            +H    ++VQ+++   RR  HP P+++HC+ S
Sbjct: 1701 EHWMEPVKVQSIVCTGRRQWHPDPVLVHCIQS 1732

>NPHP3_XENLA (Q6AZT7) Nephrocystin-3|
          Length = 1300

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 20/60 (33%), Positives = 28/60 (46%)
 Frame = +3

Query: 105 KNNDTMYQCTNMNQSVQLIRLSDISHSCSVSYTAKEYIFLTEILKFRRPSWTDATQCRMM 284
           K  D + QC     +V L RL  +     V  +AKE  F+ EIL F   S    ++C +M
Sbjct: 702 KIEDVLQQCLQCQDTVSLYRLV-LRSVQEVMPSAKEKEFMREILCFISVSHNGVSECELM 760

>RPO2_FOWPV (Q9J544) DNA-directed RNA polymerase 132 kDa polypeptide (EC 2.7.7.6)|
          Length = 1161

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 21/85 (24%), Positives = 33/85 (38%)
 Frame = +3

Query: 36   RCTRKRGRKLEQSTKATKRQGGYKNNDTMYQCTNMNQSVQLIRLSDISHSCSVSYTAKEY 215
            RC  K+ + + Q+ +  KR GG                   I+  ++   C +++ A   
Sbjct: 1021 RCRGKKTKLIRQANEGRKRGGG-------------------IKFGEMERDCLIAHGAANT 1061

Query: 216  IFLTEILKFRRPSWTDATQCRMMGD 290
            I  TEILK     + D   C   GD
Sbjct: 1062 I--TEILKDSEEDYQDVYVCENCGD 1084

>SFSA_ARCFU (O28756) Sugar fermentation stimulation protein homolog|
          Length = 219

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +3

Query: 3   RESIMERNKIDRCTRKRGRKLEQSTKATKRQGGYKNNDTMYQ 128
           +E I E N + +C  KRG KL     A   +GGY   DT  Q
Sbjct: 43  KELIFEGN-VGKCLTKRGGKLSYRLFAVSCEGGYALIDTQLQ 83

>UQCR2_CANGA (Q6FSJ3) Ubiquinol-cytochrome-c reductase complex core protein 2,|
           mitochondrial precursor (EC 1.10.2.2)
          Length = 364

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +3

Query: 123 YQCTNMNQSVQLIRLSDISHSCSVSYTAKEYIFL-TEILKFRRPSWTDA 266
           +Q TN   +++L+R S++   C+ S   +EYI L    LK   P + +A
Sbjct: 54  FQNTNTKSALRLVRESELLGGCTKSTVDREYITLEARFLKENLPYYVNA 102

>CCNE_HEMPU (O15995) G1/S-specific cyclin-E|
          Length = 424

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 20/69 (28%), Positives = 30/69 (43%)
 Frame = +3

Query: 6   ESIMERNKIDRCTRKRGRKLEQSTKATKRQGGYKNNDTMYQCTNMNQSVQLIRLSDISHS 185
           E I + N +  CTRKR  + + +T  +K +   +      Q T  N+ V +   S I  S
Sbjct: 19  ECISDENNLPMCTRKRKTREQDTTGVSKAEEVQRRRQ---QFTIENRWVPISESSSIETS 75

Query: 186 CSVSYTAKE 212
             V    KE
Sbjct: 76  LLVPMQTKE 84

>POLG_DEN3 (P27915) Genome polyprotein [Contains: Capsid protein C (Core|
            protein); Envelope protein M (Matrix protein); Major
            envelope protein E; Nonstructural protein 1 (NS1);
            Nonstructural protein 2A (NS2A); Flavivirin protease NS2B
            regulatory subunit;
          Length = 3390

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +3

Query: 9    SIMERNKIDRCTRKRGRKLEQSTKATKRQGGYKNNDTMYQCTNMN 143
            SI   N I  C RK G+K+ Q ++        K  DT YQ T +N
Sbjct: 1838 SIKAGNVIANCLRKNGKKVIQLSR--------KTFDTEYQKTKLN 1874

>TRIM6_HUMAN (Q9C030) Tripartite motif protein 6 (RING finger protein 89)|
          Length = 488

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +3

Query: 21  RNKIDRCTRKRGRKLEQSTKATKRQGGYKNNDTMYQCTNMNQSVQLIRLSDISHSCSVS 197
           RN +DR  ++  +KLEQ  K   R      ND ++Q  ++ + +     SD+   C  S
Sbjct: 191 RNILDRVEQRELKKLEQEEKKGLRIIEEAENDLVHQTQSLRELI-----SDLERRCQGS 244


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,697,149
Number of Sequences: 219361
Number of extensions: 850568
Number of successful extensions: 2272
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2272
length of database: 80,573,946
effective HSP length: 94
effective length of database: 59,954,012
effective search space used: 1438896288
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)