ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart29a07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL512444.20| Human DNA sequence from clone RP11-69E9 on chro... 44 0.30
2emb|AL121872.12|HSB348B13 Human DNA sequence from clone RP13-348... 44 0.30
3gb|CP000017.1| Streptococcus pyogenes MGAS5005, complete genome 42 1.2
4gb|CP000003.1| Streptococcus pyogenes MGAS10394, complete genome 42 1.2
5gb|AE006633.1| Streptococcus pyogenes M1 GAS, section 162 of 167... 42 1.2
6gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome 42 1.2
7gb|CP000261.1| Streptococcus pyogenes MGAS2096, complete genome 42 1.2
8gb|CP000260.1| Streptococcus pyogenes MGAS10270, complete genome 42 1.2
9gb|CP000259.1| Streptococcus pyogenes MGAS9429, complete genome 42 1.2
10gb|CP000056.1| Streptococcus pyogenes MGAS6180, complete genome 42 1.2
11ref|XM_500347.1| Yarrowia lipolytica CLIB122, YALI0B00528g predi... 42 1.2
12gb|AY338490.1| Homo sapiens glutathione reductase (GSR) gene, co... 42 1.2
13gb|CP000282.1| Saccharophagus degradans 2-40, complete genome 42 1.2
14gb|AE010120.1| Streptococcus pyogenes strain MGAS8232, section 1... 42 1.2
15gb|AC009314.4| Homo sapiens BAC clone RP11-465K4 from 8, complet... 42 1.2
16gb|AE014074.1| Streptococcus pyogenes MGAS315, complete genome 42 1.2
17dbj|BA000034.2| Streptococcus pyogenes SSI-1 DNA, complete genome 42 1.2
18gb|AF228703.1|AF228703 Homo sapiens mitochondrial glutathione re... 42 1.2
19emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB1... 42 1.2
20gb|AC024753.1| Caenorhabditis elegans cosmid Y23H5B, complete se... 40 4.7
21gb|AC099728.6| Mus musculus chromosome 7, clone RP23-417I5, comp... 40 4.7
22emb|CR956392.5| M.truncatula DNA sequence from clone MTH2-52P12 ... 40 4.7
23dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
24dbj|AP005570.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
25gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 40 4.7
26dbj|AP006402.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 4.7
27emb|AL807784.11| Mouse DNA sequence from clone RP23-448C18 on ch... 40 4.7

>emb|AL512444.20| Human DNA sequence from clone RP11-69E9 on chromosome 1 Contains part
            of the EPHB2 gene for EphB2 and a novel gene, complete
            sequence
          Length = 126589

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 277  ggatgatgggtgacggatgggt 298
            ||||||||||||||||||||||
Sbjct: 3377 ggatgatgggtgacggatgggt 3398



to top

>emb|AL121872.12|HSB348B13 Human DNA sequence from clone RP13-348B13 on chromosome X Contains a
             pseudogene similar to part of SRI (sorcin) and a novel
             gene, complete sequence
          Length = 142689

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 62    acttgagcaatctaccaaagca 83
             ||||||||||||||||||||||
Sbjct: 35732 acttgagcaatctaccaaagca 35711



to top

>gb|CP000017.1| Streptococcus pyogenes MGAS5005, complete genome
          Length = 1838554

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 291     ggatgggtcagtcgtcgtcgt 311
               |||||||||||||||||||||
Sbjct: 1783266 ggatgggtcagtcgtcgtcgt 1783246



to top

>gb|CP000003.1| Streptococcus pyogenes MGAS10394, complete genome
          Length = 1899877

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 291     ggatgggtcagtcgtcgtcgt 311
               |||||||||||||||||||||
Sbjct: 1844103 ggatgggtcagtcgtcgtcgt 1844083



to top

>gb|AE006633.1| Streptococcus pyogenes M1 GAS, section 162 of 167 of the complete
             genome
          Length = 14098

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 291   ggatgggtcagtcgtcgtcgt 311
             |||||||||||||||||||||
Sbjct: 13834 ggatgggtcagtcgtcgtcgt 13814



to top

>gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome
          Length = 1937111

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 291     ggatgggtcagtcgtcgtcgt 311
               |||||||||||||||||||||
Sbjct: 1886928 ggatgggtcagtcgtcgtcgt 1886908



to top

>gb|CP000261.1| Streptococcus pyogenes MGAS2096, complete genome
          Length = 1860355

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 291     ggatgggtcagtcgtcgtcgt 311
               |||||||||||||||||||||
Sbjct: 1806475 ggatgggtcagtcgtcgtcgt 1806455



to top

>gb|CP000260.1| Streptococcus pyogenes MGAS10270, complete genome
          Length = 1928252

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 291     ggatgggtcagtcgtcgtcgt 311
               |||||||||||||||||||||
Sbjct: 1858861 ggatgggtcagtcgtcgtcgt 1858841



to top

>gb|CP000259.1| Streptococcus pyogenes MGAS9429, complete genome
          Length = 1836467

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 291     ggatgggtcagtcgtcgtcgt 311
               |||||||||||||||||||||
Sbjct: 1782598 ggatgggtcagtcgtcgtcgt 1782578



to top

>gb|CP000056.1| Streptococcus pyogenes MGAS6180, complete genome
          Length = 1897573

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 291     ggatgggtcagtcgtcgtcgt 311
               |||||||||||||||||||||
Sbjct: 1831810 ggatgggtcagtcgtcgtcgt 1831790



to top

>ref|XM_500347.1| Yarrowia lipolytica CLIB122, YALI0B00528g predicted mRNA
          Length = 2781

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 300 agtcgtcgtcgtcctcgtagt 320
           |||||||||||||||||||||
Sbjct: 55  agtcgtcgtcgtcctcgtagt 35



to top

>gb|AY338490.1| Homo sapiens glutathione reductase (GSR) gene, complete cds
          Length = 50564

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 51    agaggaagaaaacttgagcaa 71
             |||||||||||||||||||||
Sbjct: 35693 agaggaagaaaacttgagcaa 35673



to top

>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome
          Length = 5057531

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 19      aacgtaataaaatcgatcgat 39
               |||||||||||||||||||||
Sbjct: 4226652 aacgtaataaaatcgatcgat 4226632



to top

>gb|AE010120.1| Streptococcus pyogenes strain MGAS8232, section 168 of 173 of the
            complete genome
          Length = 10029

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 291  ggatgggtcagtcgtcgtcgt 311
            |||||||||||||||||||||
Sbjct: 4839 ggatgggtcagtcgtcgtcgt 4819



to top

>gb|AC009314.4| Homo sapiens BAC clone RP11-465K4 from 8, complete sequence
          Length = 161788

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 51     agaggaagaaaacttgagcaa 71
              |||||||||||||||||||||
Sbjct: 146198 agaggaagaaaacttgagcaa 146178



to top

>gb|AE014074.1| Streptococcus pyogenes MGAS315, complete genome
          Length = 1900521

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 291     ggatgggtcagtcgtcgtcgt 311
               |||||||||||||||||||||
Sbjct: 1846421 ggatgggtcagtcgtcgtcgt 1846401



to top

>dbj|BA000034.2| Streptococcus pyogenes SSI-1 DNA, complete genome
          Length = 1894275

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 291     ggatgggtcagtcgtcgtcgt 311
               |||||||||||||||||||||
Sbjct: 1840206 ggatgggtcagtcgtcgtcgt 1840186



to top

>gb|AF228703.1|AF228703 Homo sapiens mitochondrial glutathione reductase and cytosolic
             glutathione reductase (GRD1) gene, complete cds,
             alternatively spliced
          Length = 52459

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 51    agaggaagaaaacttgagcaa 71
             |||||||||||||||||||||
Sbjct: 35311 agaggaagaaaacttgagcaa 35291



to top

>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia
             lipolytica
          Length = 3066374

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 300   agtcgtcgtcgtcctcgtagt 320
             |||||||||||||||||||||
Sbjct: 48458 agtcgtcgtcgtcctcgtagt 48478



to top

>gb|AC024753.1| Caenorhabditis elegans cosmid Y23H5B, complete sequence
          Length = 69663

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 127   aatgtacaaatatgaatcag 146
             ||||||||||||||||||||
Sbjct: 45325 aatgtacaaatatgaatcag 45306



to top

>gb|AC099728.6| Mus musculus chromosome 7, clone RP23-417I5, complete sequence
          Length = 205550

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 65    tgagcaatctaccaaagcaa 84
             ||||||||||||||||||||
Sbjct: 87314 tgagcaatctaccaaagcaa 87295



to top

>emb|CR956392.5| M.truncatula DNA sequence from clone MTH2-52P12 on chromosome 3,
             complete sequence
          Length = 115163

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 46    gtaaaagaggaagaaaactt 65
             ||||||||||||||||||||
Sbjct: 53952 gtaaaagaggaagaaaactt 53933



to top

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 250      cttcatggacggacgcgacg 269
                ||||||||||||||||||||
Sbjct: 16302395 cttcatggacggacgcgacg 16302376



to top

>dbj|AP005570.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1344_B01
          Length = 170912

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 250    cttcatggacggacgcgacg 269
              ||||||||||||||||||||
Sbjct: 118911 cttcatggacggacgcgacg 118892



to top

>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 313     ctcgtagtagcgcttgaactcgaa 336
               |||||||||||||||| |||||||
Sbjct: 3081722 ctcgtagtagcgcttgtactcgaa 3081745



to top

>dbj|AP006402.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT34J23, TM0284,
            complete sequence
          Length = 92675

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 47   taaaagaggaagaaaacttg 66
            ||||||||||||||||||||
Sbjct: 2115 taaaagaggaagaaaacttg 2096



to top

>emb|AL807784.11| Mouse DNA sequence from clone RP23-448C18 on chromosome X, complete
             sequence
          Length = 127196

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 47    taaaagaggaagaaaacttg 66
             ||||||||||||||||||||
Sbjct: 98671 taaaagaggaagaaaacttg 98690


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,739,494
Number of Sequences: 3902068
Number of extensions: 2739494
Number of successful extensions: 55541
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55349
Number of HSP's gapped (non-prelim): 192
length of query: 356
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 334
effective length of database: 17,147,199,772
effective search space: 5727164723848
effective search space used: 5727164723848
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top