Clone Name | rbart29a07 |
---|---|
Clone Library Name | barley_pub |
>emb|AL512444.20| Human DNA sequence from clone RP11-69E9 on chromosome 1 Contains part of the EPHB2 gene for EphB2 and a novel gene, complete sequence Length = 126589 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 277 ggatgatgggtgacggatgggt 298 |||||||||||||||||||||| Sbjct: 3377 ggatgatgggtgacggatgggt 3398
>emb|AL121872.12|HSB348B13 Human DNA sequence from clone RP13-348B13 on chromosome X Contains a pseudogene similar to part of SRI (sorcin) and a novel gene, complete sequence Length = 142689 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 62 acttgagcaatctaccaaagca 83 |||||||||||||||||||||| Sbjct: 35732 acttgagcaatctaccaaagca 35711
>gb|CP000017.1| Streptococcus pyogenes MGAS5005, complete genome Length = 1838554 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 ggatgggtcagtcgtcgtcgt 311 ||||||||||||||||||||| Sbjct: 1783266 ggatgggtcagtcgtcgtcgt 1783246
>gb|CP000003.1| Streptococcus pyogenes MGAS10394, complete genome Length = 1899877 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 ggatgggtcagtcgtcgtcgt 311 ||||||||||||||||||||| Sbjct: 1844103 ggatgggtcagtcgtcgtcgt 1844083
>gb|AE006633.1| Streptococcus pyogenes M1 GAS, section 162 of 167 of the complete genome Length = 14098 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 ggatgggtcagtcgtcgtcgt 311 ||||||||||||||||||||| Sbjct: 13834 ggatgggtcagtcgtcgtcgt 13814
>gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome Length = 1937111 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 ggatgggtcagtcgtcgtcgt 311 ||||||||||||||||||||| Sbjct: 1886928 ggatgggtcagtcgtcgtcgt 1886908
>gb|CP000261.1| Streptococcus pyogenes MGAS2096, complete genome Length = 1860355 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 ggatgggtcagtcgtcgtcgt 311 ||||||||||||||||||||| Sbjct: 1806475 ggatgggtcagtcgtcgtcgt 1806455
>gb|CP000260.1| Streptococcus pyogenes MGAS10270, complete genome Length = 1928252 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 ggatgggtcagtcgtcgtcgt 311 ||||||||||||||||||||| Sbjct: 1858861 ggatgggtcagtcgtcgtcgt 1858841
>gb|CP000259.1| Streptococcus pyogenes MGAS9429, complete genome Length = 1836467 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 ggatgggtcagtcgtcgtcgt 311 ||||||||||||||||||||| Sbjct: 1782598 ggatgggtcagtcgtcgtcgt 1782578
>gb|CP000056.1| Streptococcus pyogenes MGAS6180, complete genome Length = 1897573 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 ggatgggtcagtcgtcgtcgt 311 ||||||||||||||||||||| Sbjct: 1831810 ggatgggtcagtcgtcgtcgt 1831790
>ref|XM_500347.1| Yarrowia lipolytica CLIB122, YALI0B00528g predicted mRNA Length = 2781 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 300 agtcgtcgtcgtcctcgtagt 320 ||||||||||||||||||||| Sbjct: 55 agtcgtcgtcgtcctcgtagt 35
>gb|AY338490.1| Homo sapiens glutathione reductase (GSR) gene, complete cds Length = 50564 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 51 agaggaagaaaacttgagcaa 71 ||||||||||||||||||||| Sbjct: 35693 agaggaagaaaacttgagcaa 35673
>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome Length = 5057531 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 19 aacgtaataaaatcgatcgat 39 ||||||||||||||||||||| Sbjct: 4226652 aacgtaataaaatcgatcgat 4226632
>gb|AE010120.1| Streptococcus pyogenes strain MGAS8232, section 168 of 173 of the complete genome Length = 10029 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 ggatgggtcagtcgtcgtcgt 311 ||||||||||||||||||||| Sbjct: 4839 ggatgggtcagtcgtcgtcgt 4819
>gb|AC009314.4| Homo sapiens BAC clone RP11-465K4 from 8, complete sequence Length = 161788 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 51 agaggaagaaaacttgagcaa 71 ||||||||||||||||||||| Sbjct: 146198 agaggaagaaaacttgagcaa 146178
>gb|AE014074.1| Streptococcus pyogenes MGAS315, complete genome Length = 1900521 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 ggatgggtcagtcgtcgtcgt 311 ||||||||||||||||||||| Sbjct: 1846421 ggatgggtcagtcgtcgtcgt 1846401
>dbj|BA000034.2| Streptococcus pyogenes SSI-1 DNA, complete genome Length = 1894275 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 ggatgggtcagtcgtcgtcgt 311 ||||||||||||||||||||| Sbjct: 1840206 ggatgggtcagtcgtcgtcgt 1840186
>gb|AF228703.1|AF228703 Homo sapiens mitochondrial glutathione reductase and cytosolic glutathione reductase (GRD1) gene, complete cds, alternatively spliced Length = 52459 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 51 agaggaagaaaacttgagcaa 71 ||||||||||||||||||||| Sbjct: 35311 agaggaagaaaacttgagcaa 35291
>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica Length = 3066374 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 300 agtcgtcgtcgtcctcgtagt 320 ||||||||||||||||||||| Sbjct: 48458 agtcgtcgtcgtcctcgtagt 48478
>gb|AC024753.1| Caenorhabditis elegans cosmid Y23H5B, complete sequence Length = 69663 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 aatgtacaaatatgaatcag 146 |||||||||||||||||||| Sbjct: 45325 aatgtacaaatatgaatcag 45306
>gb|AC099728.6| Mus musculus chromosome 7, clone RP23-417I5, complete sequence Length = 205550 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 tgagcaatctaccaaagcaa 84 |||||||||||||||||||| Sbjct: 87314 tgagcaatctaccaaagcaa 87295
>emb|CR956392.5| M.truncatula DNA sequence from clone MTH2-52P12 on chromosome 3, complete sequence Length = 115163 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 gtaaaagaggaagaaaactt 65 |||||||||||||||||||| Sbjct: 53952 gtaaaagaggaagaaaactt 53933
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 cttcatggacggacgcgacg 269 |||||||||||||||||||| Sbjct: 16302395 cttcatggacggacgcgacg 16302376
>dbj|AP005570.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1344_B01 Length = 170912 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 cttcatggacggacgcgacg 269 |||||||||||||||||||| Sbjct: 118911 cttcatggacggacgcgacg 118892
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 313 ctcgtagtagcgcttgaactcgaa 336 |||||||||||||||| ||||||| Sbjct: 3081722 ctcgtagtagcgcttgtactcgaa 3081745
>dbj|AP006402.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT34J23, TM0284, complete sequence Length = 92675 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 taaaagaggaagaaaacttg 66 |||||||||||||||||||| Sbjct: 2115 taaaagaggaagaaaacttg 2096
>emb|AL807784.11| Mouse DNA sequence from clone RP23-448C18 on chromosome X, complete sequence Length = 127196 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 taaaagaggaagaaaacttg 66 |||||||||||||||||||| Sbjct: 98671 taaaagaggaagaaaacttg 98690 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,739,494 Number of Sequences: 3902068 Number of extensions: 2739494 Number of successful extensions: 55541 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55349 Number of HSP's gapped (non-prelim): 192 length of query: 356 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 334 effective length of database: 17,147,199,772 effective search space: 5727164723848 effective search space used: 5727164723848 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)