ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart29a02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DRP2A_ARATH (Q9SE83) Dynamin-2A (EC 3.6.5.5) (Dynamin-related pr... 38 0.016
2DRP2B_ARATH (Q9LQ55) Dynamin-2B (EC 3.6.5.5) (Dynamin-related pr... 35 0.11
3LACR_STAXY (O33813) Lactose operon transcription activator 31 2.0
4RL27A_DROME (P41092) 60S ribosomal protein L27a 30 3.4
5YMER_STAAU (P08655) Hypothetical 19.7 kDa protein in mercuric re... 30 4.4
6ADA12_MOUSE (Q61824) ADAM 12 precursor (EC 3.4.24.-) (A disinteg... 29 5.8
7CAT8_YEAST (P39113) Regulatory protein CAT8 29 5.8
8HAK8_ORYSA (Q8VXB5) Putative potassium transporter 8 (OsHAK8) 28 9.9

>DRP2A_ARATH (Q9SE83) Dynamin-2A (EC 3.6.5.5) (Dynamin-related protein 2A)|
           (Dynamin-like protein 6)
          Length = 914

 Score = 37.7 bits (86), Expect = 0.016
 Identities = 18/26 (69%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
 Frame = -3

Query: 418 ENGDANGANSGSRR--TPNRLPPAPP 347
           +NGDA    SGS R  TPNRLPPAPP
Sbjct: 881 QNGDAASPGSGSNRRTTPNRLPPAPP 906



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>DRP2B_ARATH (Q9LQ55) Dynamin-2B (EC 3.6.5.5) (Dynamin-related protein 2B)|
           (Dynamin-like protein 3)
          Length = 920

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 17/27 (62%), Positives = 22/27 (81%), Gaps = 2/27 (7%)
 Frame = -3

Query: 418 ENG-DANGANSGSRRT-PNRLPPAPPK 344
           +NG D++G+   SRRT PNRLPPAPP+
Sbjct: 887 QNGEDSSGSGGSSRRTTPNRLPPAPPQ 913



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>LACR_STAXY (O33813) Lactose operon transcription activator|
          Length = 279

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = +3

Query: 168 YITYIFL*TTEVLWIHT---IHAISRQLSILHPSLFSHQYHKGVRACHEKYDSHIA 326
           Y+TYI +     L IHT   I  ISRQ+    P LFS  + K       +Y  H +
Sbjct: 219 YLTYIRMYHASQLLIHTSTLISDISRQVGYKDPLLFSKNFTKHFEISASEYRHHFS 274



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>RL27A_DROME (P41092) 60S ribosomal protein L27a|
          Length = 149

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
 Frame = +3

Query: 252 HPSLFSHQYHKGVRACHEKYDSHIAN---QHP*YFGGAGGNRFGVRRLPELAPLASPFSY 422
           H  +  H+ H G R        H  N    HP YFG  G   F +RR  +  P       
Sbjct: 20  HGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLRRQHKFRP-----EI 74

Query: 423 RRPRLSALLDLDSFCELDR 479
              +L +L+  + F EL++
Sbjct: 75  NLDKLWSLVGAEKFAELEK 93



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>YMER_STAAU (P08655) Hypothetical 19.7 kDa protein in mercuric resistance|
           operon
          Length = 180

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -1

Query: 444 VLTVGAGGMKMGTPMVPIQAADAHQIGCHLHRRNTKDVDW 325
           V   G      G P+ P+ +AD+H +  +L + N+K +++
Sbjct: 29  VYAAGDAAATDGLPLTPVASADSHVVASNLLKGNSKKIEY 68



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>ADA12_MOUSE (Q61824) ADAM 12 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 12) (Meltrin alpha)
          Length = 903

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -1

Query: 486 LPTDPVHRTSQDREVLTVGAGGMKMGTPMVPIQAADAHQI 367
           LP DP+ RTS+    L    G  + G    PI+ A  HQ+
Sbjct: 854 LPADPLSRTSRLTSALVRTPGQQEPGHRPAPIRPAPKHQV 893



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>CAT8_YEAST (P39113) Regulatory protein CAT8|
          Length = 1433

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 418 ENGDANGANSGSRRTPNRLPPAPP 347
           +NG  +G NSGS  +P   PP PP
Sbjct: 189 QNGKMDGDNSGSAMSPLGAPPPPP 212



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>HAK8_ORYSA (Q8VXB5) Putative potassium transporter 8 (OsHAK8)|
          Length = 793

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
 Frame = +1

Query: 370 LVCVGCLNWH---HWRPHFHTAGPDCQHFSIL--TRSVNWI 477
           L+C+  L  +   HW PH + A   C  F  L  TR   W+
Sbjct: 228 LICMSALGLYNIIHWNPHVYQALNPCYMFKFLKKTRKYGWM 268


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,819,623
Number of Sequences: 219361
Number of extensions: 1496765
Number of successful extensions: 3741
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3740
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3362826254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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