Clone Information

BLAST Search Result

Clone Name	rbart29a02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_467690.1\| Oryza sativa (japonica cultivar-group), mRNA	88	3e-14
2	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	88	3e-14
3	dbj\|AP005112.3\| Oryza sativa (japonica cultivar-group) genomic D...	88	3e-14
4	dbj\|AK099699.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	88	3e-14
5	gb\|BT016893.1\| Zea mays clone Contig726 mRNA sequence	78	3e-11
6	gb\|AY103745.1\| Zea mays PCO097601 mRNA sequence	70	7e-09
7	gb\|BT018372.1\| Zea mays clone EL01N0306F02.d mRNA sequence	62	2e-06
8	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	54	4e-04
9	dbj\|AP004027.3\| Oryza sativa (japonica cultivar-group) genomic D...	54	4e-04
10	dbj\|AK102187.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	46	0.11
11	ref\|NM_106101.2\| Arabidopsis thaliana protein binding / ubiquiti...	44	0.42
12	ref\|NM_106102.3\| Arabidopsis thaliana FUT3; fucosyltransferase/ ...	44	0.42
13	gb\|AY050433.1\| Arabidopsis thaliana At1g74410/F1M20_9 mRNA, comp...	44	0.42
14	gb\|AC011765.6\|AC011765 Arabidopsis thaliana chromosome 1 BAC F1M...	44	0.42
15	gb\|AY087335.1\| Arabidopsis thaliana clone 34363 mRNA, complete s...	44	0.42
16	emb\|CR854834.11\| Zebrafish DNA sequence from clone DKEYP-92B10 i...	42	1.7
17	ref\|XM_763163.1\| Giardia lamblia ATCC 50803 hypothetical protein...	42	1.7
18	emb\|BX649469.8\| Zebrafish DNA sequence from clone DKEY-273O8 in ...	42	1.7
19	gb\|M86396.1\|SCMEGFRA Schistosoma mansoni epidermal growth factor...	42	1.7
20	gb\|AC102410.5\| Mus musculus chromosome 18, clone RP24-369O1, com...	40	6.6
21	ref\|XM_984295.1\| PREDICTED: Mus musculus desmoglein 3 (Dsg3), mRNA	40	6.6
22	gb\|AF131215.2\| Homo sapiens chromosome 8 map 8p23-p22 clone CTC-...	40	6.6
23	gb\|CP000323.1\| Psychrobacter cryohalolentis K5, complete genome	40	6.6
24	ref\|NM_030596.1\| Mus musculus desmoglein 3 (Dsg3), mRNA	40	6.6
25	emb\|AL627313.16\| Human DNA sequence from clone RP11-492M19 on ch...	40	6.6
26	gb\|AC105108.4\| Homo sapiens chromosome 8, clone CTD2-3179G6, com...	40	6.6
27	gb\|AF403184.1\| Desulfitobacterium hafniense clone 3277 putative ...	40	6.6
28	dbj\|AK148657.1\| Mus musculus 2 days neonate sympathetic ganglion...	40	6.6
29	dbj\|AK029018.1\| Mus musculus 10 days neonate skin cDNA, RIKEN fu...	40	6.6
30	gb\|U86016.1\|MMU86016 Mus musculus desmoglein 3 (DSG3) mRNA, part...	40	6.6
31	dbj\|AK037142.1\| Mus musculus adult female vagina cDNA, RIKEN ful...	40	6.6
32	gb\|AC006991.3\|AC006991 Homo sapiens BAC clone RP11-270H4 from Y,...	40	6.6
33	gb\|AC007322.4\|AC007322 Homo sapiens BAC clone RP11-553C13 from Y...	40	6.6
34	gb\|AC008175.2\|AC008175 Homo sapiens BAC clone RP11-427G18 from Y...	40	6.6
35	gb\|AC009947.2\|AC009947 Homo sapiens BAC clone RP11-39P20 from Y,...	40	6.6
36	ref\|NG_004755.1\| Homo sapiens chromosome Y palindromes P1, P2, P...	40	6.6
37	gb\|AC012089.13\|AC012089 Homo sapiens 3 BAC RP11-758L3 (Roswell P...	40	6.6
38	gb\|AC009429.3\|AC009429 Homo sapiens, clone RP11-45M17, complete ...	40	6.6
39	gb\|AC156624.1\| Ornithorhynchus anatinus clone OA_Bb-193E18, comp...	40	6.6
40	gb\|AC132091.3\| Mus musculus BAC clone RP24-465H15 from 18, compl...	40	6.6
41	gb\|U36616.1\|HSYRRMC01 Human Y-chromosome RNA recognition motif p...	40	6.6
42	gb\|AC173486.2\| Mus musculus BAC clone RP23-18O16 from chromosome...	40	6.6
43	gb\|AC168066.4\| Mus musculus BAC clone RP23-134F19 from chromosom...	40	6.6

>ref|XM_467690.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3215

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 107/128 (83%)
 Strand = Plus / Minus

                                                                        
Query: 351  ggtgcaggtggcaaccgatttggtgtgcgtcggctgcctgaattggcaccattggcgtcc 410
            ||||| |||||||| || |||||||||||||||||||| || ||  |||||||  |||||
Sbjct: 2837 ggtgctggtggcaaacggtttggtgtgcgtcggctgccagagttaccaccattcacgtcc 2778

                                                                        
Query: 411  ccattttcataccgccggccccgactgtcagcacttctcgatcttgactcgttctgtgaa 470
            ||||||||||| ||   ||| || |||||||||||||| || ||||  || || ||||||
Sbjct: 2777 ccattttcatagcgtttgccacggctgtcagcacttcttgaccttgtttcattgtgtgaa 2718

                    
Query: 471  ctggatcg 478
            ||||||||
Sbjct: 2717 ctggatcg 2710



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 60/65 (92%), Gaps = 1/65 (1%)
 Strand = Plus / Minus

                                                                        
Query: 180  atatttctataaacaactgaggtcctctggatacacaccattcatgc-gatctctcgcca 238
            |||||||||| |||||||||| |||||||||||||||||||||||||  |||||||| ||
Sbjct: 3037 atatttctatgaacaactgagatcctctggatacacaccattcatgcaaatctctcgtca 2978

                 
Query: 239  gctct 243
            |||||
Sbjct: 2977 gctct 2973



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 85/105 (80%), Gaps = 6/105 (5%)
 Strand = Plus / Minus

                                                                        
Query: 55   ttacaacaacagagttcagaaccaagatcaactgatatgtggcaacaaaat------ctc 108
            |||||||| |||||| ||  |||||||||||| ||| ||||| ||||||||      | |
Sbjct: 3171 ttacaacagcagagtacaagaccaagatcaaccgatctgtggtaacaaaatcccacaccc 3112

                                                         
Query: 109  acaggccgagagagcatcagactgatcaatatagcaaaatgatcg 153
            |||||| ||| |||| |||||| |||||||||  |||||||||||
Sbjct: 3111 acaggctgagcgagcctcagacagatcaatatgccaaaatgatcg 3067

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 107/128 (83%)
 Strand = Plus / Plus

                                                                            
Query: 351      ggtgcaggtggcaaccgatttggtgtgcgtcggctgcctgaattggcaccattggcgtcc 410
                ||||| |||||||| || |||||||||||||||||||| || ||  |||||||  |||||
Sbjct: 30880546 ggtgctggtggcaaacggtttggtgtgcgtcggctgccagagttaccaccattcacgtcc 30880605

                                                                            
Query: 411      ccattttcataccgccggccccgactgtcagcacttctcgatcttgactcgttctgtgaa 470
                ||||||||||| ||   ||| || |||||||||||||| || ||||  || || ||||||
Sbjct: 30880606 ccattttcatagcgtttgccacggctgtcagcacttcttgaccttgtttcattgtgtgaa 30880665

                        
Query: 471      ctggatcg 478
                ||||||||
Sbjct: 30880666 ctggatcg 30880673



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 60/65 (92%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                            
Query: 180      atatttctataaacaactgaggtcctctggatacacaccattcatgc-gatctctcgcca 238
                |||||||||| |||||||||| |||||||||||||||||||||||||  |||||||| ||
Sbjct: 30880346 atatttctatgaacaactgagatcctctggatacacaccattcatgcaaatctctcgtca 30880405

                     
Query: 239      gctct 243
                |||||
Sbjct: 30880406 gctct 30880410



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 85/105 (80%), Gaps = 6/105 (5%)
 Strand = Plus / Plus

                                                                            
Query: 55       ttacaacaacagagttcagaaccaagatcaactgatatgtggcaacaaaat------ctc 108
                |||||||| |||||| ||  |||||||||||| ||| ||||| ||||||||      | |
Sbjct: 30880212 ttacaacagcagagtacaagaccaagatcaaccgatctgtggtaacaaaatcccacaccc 30880271

                                                             
Query: 109      acaggccgagagagcatcagactgatcaatatagcaaaatgatcg 153
                |||||| ||| |||| |||||| |||||||||  |||||||||||
Sbjct: 30880272 acaggctgagcgagcctcagacagatcaatatgccaaaatgatcg 30880316

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>dbj|AP005112.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0684F11
          Length = 147731

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 107/128 (83%)
 Strand = Plus / Plus

                                                                         
Query: 351   ggtgcaggtggcaaccgatttggtgtgcgtcggctgcctgaattggcaccattggcgtcc 410
             ||||| |||||||| || |||||||||||||||||||| || ||  |||||||  |||||
Sbjct: 64123 ggtgctggtggcaaacggtttggtgtgcgtcggctgccagagttaccaccattcacgtcc 64182

                                                                         
Query: 411   ccattttcataccgccggccccgactgtcagcacttctcgatcttgactcgttctgtgaa 470
             ||||||||||| ||   ||| || |||||||||||||| || ||||  || || ||||||
Sbjct: 64183 ccattttcatagcgtttgccacggctgtcagcacttcttgaccttgtttcattgtgtgaa 64242

                     
Query: 471   ctggatcg 478
             ||||||||
Sbjct: 64243 ctggatcg 64250



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 60/65 (92%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                         
Query: 180   atatttctataaacaactgaggtcctctggatacacaccattcatgc-gatctctcgcca 238
             |||||||||| |||||||||| |||||||||||||||||||||||||  |||||||| ||
Sbjct: 63923 atatttctatgaacaactgagatcctctggatacacaccattcatgcaaatctctcgtca 63982

                  
Query: 239   gctct 243
             |||||
Sbjct: 63983 gctct 63987



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 85/105 (80%), Gaps = 6/105 (5%)
 Strand = Plus / Plus

                                                                         
Query: 55    ttacaacaacagagttcagaaccaagatcaactgatatgtggcaacaaaat------ctc 108
             |||||||| |||||| ||  |||||||||||| ||| ||||| ||||||||      | |
Sbjct: 63789 ttacaacagcagagtacaagaccaagatcaaccgatctgtggtaacaaaatcccacaccc 63848

                                                          
Query: 109   acaggccgagagagcatcagactgatcaatatagcaaaatgatcg 153
             |||||| ||| |||| |||||| |||||||||  |||||||||||
Sbjct: 63849 acaggctgagcgagcctcagacagatcaatatgccaaaatgatcg 63893

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>dbj|AK099699.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074K16, full
            insert sequence
          Length = 3215

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 107/128 (83%)
 Strand = Plus / Minus

                                                                        
Query: 351  ggtgcaggtggcaaccgatttggtgtgcgtcggctgcctgaattggcaccattggcgtcc 410
            ||||| |||||||| || |||||||||||||||||||| || ||  |||||||  |||||
Sbjct: 2837 ggtgctggtggcaaacggtttggtgtgcgtcggctgccagagttaccaccattcacgtcc 2778

                                                                        
Query: 411  ccattttcataccgccggccccgactgtcagcacttctcgatcttgactcgttctgtgaa 470
            ||||||||||| ||   ||| || |||||||||||||| || ||||  || || ||||||
Sbjct: 2777 ccattttcatagcgtttgccacggctgtcagcacttcttgaccttgtttcattgtgtgaa 2718

                    
Query: 471  ctggatcg 478
            ||||||||
Sbjct: 2717 ctggatcg 2710



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 60/65 (92%), Gaps = 1/65 (1%)
 Strand = Plus / Minus

                                                                        
Query: 180  atatttctataaacaactgaggtcctctggatacacaccattcatgc-gatctctcgcca 238
            |||||||||| |||||||||| |||||||||||||||||||||||||  |||||||| ||
Sbjct: 3037 atatttctatgaacaactgagatcctctggatacacaccattcatgcaaatctctcgtca 2978

                 
Query: 239  gctct 243
            |||||
Sbjct: 2977 gctct 2973



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 85/105 (80%), Gaps = 6/105 (5%)
 Strand = Plus / Minus

                                                                        
Query: 55   ttacaacaacagagttcagaaccaagatcaactgatatgtggcaacaaaat------ctc 108
            |||||||| |||||| ||  |||||||||||| ||| ||||| ||||||||      | |
Sbjct: 3171 ttacaacagcagagtacaagaccaagatcaaccgatctgtggtaacaaaatcccacaccc 3112

                                                         
Query: 109  acaggccgagagagcatcagactgatcaatatagcaaaatgatcg 153
            |||||| ||| |||| |||||| |||||||||  |||||||||||
Sbjct: 3111 acaggctgagcgagcctcagacagatcaatatgccaaaatgatcg 3067

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>gb|BT016893.1| Zea mays clone Contig726 mRNA sequence
          Length = 858

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                       
Query: 338 ttagtatttcggcggtgcaggtggcaaccgatttggtgtgcgtcggctgcctgaattggc 397
           ||||||||| |||||||| ||||||||||| ||||||||||| |||||||| || |||||
Sbjct: 212 ttagtattttggcggtgctggtggcaaccggtttggtgtgcgccggctgccagagttggc 271

              
Query: 398 acc 400
           |||
Sbjct: 272 acc 274

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>gb|AY103745.1| Zea mays PCO097601 mRNA sequence
          Length = 1567

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 56/63 (88%)
 Strand = Plus / Minus

                                                                        
Query: 338  ttagtatttcggcggtgcaggtggcaaccgatttggtgtgcgtcggctgcctgaattggc 397
            ||||||||| |||||||| ||||||||||| || |||||||| |||||||| || |||||
Sbjct: 1316 ttagtattttggcggtgctggtggcaaccggttcggtgtgcgccggctgccagagttggc 1257

               
Query: 398  acc 400
            |||
Sbjct: 1256 acc 1254



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 174  acctacatatttctataaacaact 197
            ||||| ||||||||||||||||||
Sbjct: 1509 acctatatatttctataaacaact 1486

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>gb|BT018372.1| Zea mays clone EL01N0306F02.d mRNA sequence
          Length = 1254

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                        
Query: 338  ttagtatttcggcggtgcaggtggcaaccgatttggtgtgcgtcggctgcctgaattggc 397
            ||||||||| ||||| || ||||||||||| || |||||||| |||||||| || |||||
Sbjct: 1079 ttagtattttggcggggctggtggcaaccggttcggtgtgcgccggctgccagagttggc 1020

               
Query: 398  acc 400
            |||
Sbjct: 1019 acc 1017

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                           
Query: 338     ttagtatttcggcggtgcaggtggcaaccgatttggtgtgcgtcggctgcctgaattggc 397
               ||||||||| || ||||| || || ||||| ||||| |||||||||||||| || |||||
Sbjct: 7680453 ttagtatttaggaggtgctggaggtaaccggtttggagtgcgtcggctgccggagttggc 7680394

                  
Query: 398     acc 400
               |||
Sbjct: 7680393 acc 7680391

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>dbj|AP004027.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OJ1136_C11
          Length = 124827

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                          
Query: 338    ttagtatttcggcggtgcaggtggcaaccgatttggtgtgcgtcggctgcctgaattggc 397
              ||||||||| || ||||| || || ||||| ||||| |||||||||||||| || |||||
Sbjct: 103708 ttagtatttaggaggtgctggaggtaaccggtttggagtgcgtcggctgccggagttggc 103649

                 
Query: 398    acc 400
              |||
Sbjct: 103648 acc 103646

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>dbj|AK102187.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086P03, full
            insert sequence
          Length = 3307

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 338  ttagtatttcggcggtgcaggtggcaaccgatttggtgtgcgtcggctgcctgaattggc 397
            ||||||||| || ||||| || || ||||| ||||| || ||||||||||| || |||||
Sbjct: 2949 ttagtatttaggaggtgctggaggtaaccggtttggagtacgtcggctgccggagttggc 2890

               
Query: 398  acc 400
            |||
Sbjct: 2889 acc 2887

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>ref|NM_106101.2| Arabidopsis thaliana protein binding / ubiquitin-protein ligase/
           zinc ion binding AT1G74410 mRNA, complete cds
          Length = 1062

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 44  agacttacaagttacaacaaca 65
           ||||||||||||||||||||||
Sbjct: 914 agacttacaagttacaacaaca 893

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>ref|NM_106102.3| Arabidopsis thaliana FUT3; fucosyltransferase/ transferase,
            transferring glycosyl groups AT1G74420 (FUT3) transcript
            variant AT1G74420.1 mRNA, complete cds
          Length = 2114

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 44   agacttacaagttacaacaaca 65
            ||||||||||||||||||||||
Sbjct: 1913 agacttacaagttacaacaaca 1934

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>gb|AY050433.1| Arabidopsis thaliana At1g74410/F1M20_9 mRNA, complete cds
          Length = 1061

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 44  agacttacaagttacaacaaca 65
           ||||||||||||||||||||||
Sbjct: 912 agacttacaagttacaacaaca 891

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>gb|AC011765.6|AC011765 Arabidopsis thaliana chromosome 1 BAC F1M20 genomic sequence, complete
             sequence
          Length = 134402

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 44    agacttacaagttacaacaaca 65
             ||||||||||||||||||||||
Sbjct: 24074 agacttacaagttacaacaaca 24053

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>gb|AY087335.1| Arabidopsis thaliana clone 34363 mRNA, complete sequence
          Length = 1036

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 44  agacttacaagttacaacaaca 65
           ||||||||||||||||||||||
Sbjct: 914 agacttacaagttacaacaaca 893

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>emb|CR854834.11| Zebrafish DNA sequence from clone DKEYP-92B10 in linkage group 11,
             complete sequence
          Length = 140484

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 296   atgccatgaaaaatatgattc 316
             |||||||||||||||||||||
Sbjct: 40570 atgccatgaaaaatatgattc 40590

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>ref|XM_763163.1| Giardia lamblia ATCC 50803 hypothetical protein
           (GLP_127_27159_25633) partial mRNA
          Length = 1527

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 51  caagttacaacaacagagttcagaa 75
           |||||||||| ||||||||||||||
Sbjct: 969 caagttacaagaacagagttcagaa 993

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>emb|BX649469.8| Zebrafish DNA sequence from clone DKEY-273O8 in linkage group 7,
             complete sequence
          Length = 80705

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 247   ttcttcatcccagtctgtttt 267
             |||||||||||||||||||||
Sbjct: 15968 ttcttcatcccagtctgtttt 15948

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>gb|M86396.1|SCMEGFRA Schistosoma mansoni epidermal growth factor receptor (SER, class 1
            product) mRNA, complete cds
          Length = 6051

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 295  catgccatgaaaaatatgatt 315
            |||||||||||||||||||||
Sbjct: 2823 catgccatgaaaaatatgatt 2803

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>gb|AC102410.5| Mus musculus chromosome 18, clone RP24-369O1, complete sequence
          Length = 164142

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 245    tattcttcatcccagtctgt 264
              ||||||||||||||||||||
Sbjct: 153695 tattcttcatcccagtctgt 153676

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>ref|XM_984295.1| PREDICTED: Mus musculus desmoglein 3 (Dsg3), mRNA
          Length = 2830

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 245 tattcttcatcccagtctgt 264
           ||||||||||||||||||||
Sbjct: 988 tattcttcatcccagtctgt 969

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>gb|AF131215.2| Homo sapiens chromosome 8 map 8p23-p22 clone CTC-306G11, complete
             sequence; and clones CTC-493P15, CTB-91N18, CTC-164D9,
             partial sequence
          Length = 186607

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 108   cacaggccgagagagcatca 127
             ||||||||||||||||||||
Sbjct: 11593 cacaggccgagagagcatca 11612

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>gb|CP000323.1| Psychrobacter cryohalolentis K5, complete genome
          Length = 3059876

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 383    gctgcctgaattggcaccattggc 406
              |||||||| |||||||||||||||
Sbjct: 465022 gctgcctgtattggcaccattggc 465045

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>ref|NM_030596.1| Mus musculus desmoglein 3 (Dsg3), mRNA
          Length = 3578

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 245 tattcttcatcccagtctgt 264
           ||||||||||||||||||||
Sbjct: 992 tattcttcatcccagtctgt 973

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>emb|AL627313.16| Human DNA sequence from clone RP11-492M19 on chromosome 1 Contains a
              novel pseudogene (LOC151871), a novel gene similar to
              ribosomal protein S6 kinase, 90kDa, polypeptide 1
              (RPS6KA1), a chromosome 20 open reading frame 52 (C20orf52)
              pseudogene and two CpG islands, complete sequence
          Length = 128342

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 291    agagcatgccatgaaaaata 310
              ||||||||||||||||||||
Sbjct: 119310 agagcatgccatgaaaaata 119291

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>gb|AC105108.4| Homo sapiens chromosome 8, clone CTD2-3179G6, complete sequence
          Length = 141073

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 108    cacaggccgagagagcatca 127
              ||||||||||||||||||||
Sbjct: 116902 cacaggccgagagagcatca 116921

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>gb|AF403184.1| Desulfitobacterium hafniense clone 3277 putative uroporphyrinogen
           III synthase/methyltransferase, membrane docking
           protein, reductive dehalogenase, putative membrane
           docking protein, putative reductive dehalogenase,
           putative transcription regulator, putative GroEL-type
           chaperonin, putative membrane-bound regulatory protein,
           and putative GroEL-type chaperonin genes, complete cds;
           and unknown genes
          Length = 27716

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 282 aagggagtgagagcatgcca 301
           ||||||||||||||||||||
Sbjct: 684 aagggagtgagagcatgcca 703

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>dbj|AK148657.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN
           full-length enriched library, clone:7120431F07
           product:desmoglein 3, full insert sequence
          Length = 4109

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 245 tattcttcatcccagtctgt 264
           ||||||||||||||||||||
Sbjct: 962 tattcttcatcccagtctgt 943

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>dbj|AK029018.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched
           library, clone:4732482D04 product:desmoglein 3, full
           insert sequence
          Length = 3483

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 245 tattcttcatcccagtctgt 264
           ||||||||||||||||||||
Sbjct: 983 tattcttcatcccagtctgt 964

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>gb|U86016.1|MMU86016 Mus musculus desmoglein 3 (DSG3) mRNA, partial cds
          Length = 2979

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 245 tattcttcatcccagtctgt 264
           ||||||||||||||||||||
Sbjct: 890 tattcttcatcccagtctgt 871

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>dbj|AK037142.1| Mus musculus adult female vagina cDNA, RIKEN full-length enriched
           library, clone:9930125N18 product:desmoglein 3, full
           insert sequence
          Length = 3578

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 245 tattcttcatcccagtctgt 264
           ||||||||||||||||||||
Sbjct: 992 tattcttcatcccagtctgt 973

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>gb|AC006991.3|AC006991 Homo sapiens BAC clone RP11-270H4 from Y, complete sequence
          Length = 173242

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 166   catacataacctacatattt 185
             ||||||||||||||||||||
Sbjct: 54222 catacataacctacatattt 54203

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>gb|AC007322.4|AC007322 Homo sapiens BAC clone RP11-553C13 from Y, complete sequence
          Length = 184215

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 166   catacataacctacatattt 185
             ||||||||||||||||||||
Sbjct: 88857 catacataacctacatattt 88876

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>gb|AC008175.2|AC008175 Homo sapiens BAC clone RP11-427G18 from Y, complete sequence
          Length = 205237

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 166    catacataacctacatattt 185
              ||||||||||||||||||||
Sbjct: 199476 catacataacctacatattt 199457

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>gb|AC009947.2|AC009947 Homo sapiens BAC clone RP11-39P20 from Y, complete sequence
          Length = 149230

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 166    catacataacctacatattt 185
              ||||||||||||||||||||
Sbjct: 110799 catacataacctacatattt 110818

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>ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat IR2
               (P1-P2-P3-IR2@) on chromosome Y
          Length = 4538292

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 166     catacataacctacatattt 185
               ||||||||||||||||||||
Sbjct: 4313000 catacataacctacatattt 4312981



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 166     catacataacctacatattt 185
               ||||||||||||||||||||
Sbjct: 1735844 catacataacctacatattt 1735863



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 166    catacataacctacatattt 185
              ||||||||||||||||||||
Sbjct: 838571 catacataacctacatattt 838552



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 166    catacataacctacatattt 185
              ||||||||||||||||||||
Sbjct: 126052 catacataacctacatattt 126071

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>gb|AC012089.13|AC012089 Homo sapiens 3 BAC RP11-758L3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 150429

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    attgcaagtttgatggaaga 46
             ||||||||||||||||||||
Sbjct: 22666 attgcaagtttgatggaaga 22647

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>gb|AC009429.3|AC009429 Homo sapiens, clone RP11-45M17, complete sequence
          Length = 160417

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 27     attgcaagtttgatggaaga 46
              ||||||||||||||||||||
Sbjct: 129797 attgcaagtttgatggaaga 129778

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>gb|AC156624.1| Ornithorhynchus anatinus clone OA_Bb-193E18, complete sequence
          Length = 162554

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 166   catacataacctacatattt 185
             ||||||||||||||||||||
Sbjct: 26113 catacataacctacatattt 26094

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>gb|AC132091.3| Mus musculus BAC clone RP24-465H15 from 18, complete sequence
          Length = 140256

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 245  tattcttcatcccagtctgt 264
            ||||||||||||||||||||
Sbjct: 1619 tattcttcatcccagtctgt 1600

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>gb|U36616.1|HSYRRMC01 Human Y-chromosome RNA recognition motif protein (YRRM) gene, exon
           2, subclone 7S2
          Length = 418

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 166 catacataacctacatattt 185
           ||||||||||||||||||||
Sbjct: 321 catacataacctacatattt 302

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>gb|AC173486.2| Mus musculus BAC clone RP23-18O16 from chromosome 16, complete sequence
          Length = 208322

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    tggcaacaaaatctcacagg 113
             ||||||||||||||||||||
Sbjct: 71162 tggcaacaaaatctcacagg 71143

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>gb|AC168066.4| Mus musculus BAC clone RP23-134F19 from chromosome 16, complete
             sequence
          Length = 198238

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    tggcaacaaaatctcacagg 113
             ||||||||||||||||||||
Sbjct: 82449 tggcaacaaaatctcacagg 82468


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,283,237
Number of Sequences: 3902068
Number of extensions: 4283237
Number of successful extensions: 86497
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86303
Number of HSP's gapped (non-prelim): 194
length of query: 486
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 464
effective length of database: 17,147,199,772
effective search space: 7956300694208
effective search space used: 7956300694208
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result