ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart29a01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CYK3_YEAST (Q07533) Cytokinesis protein 3 30 3.6
2CKLF4_MOUSE (Q8CJ61) CKLF-like MARVEL transmembrane domain-conta... 29 6.2
3YCF19_CYACA (Q9TM45) Hypothetical 10.5 kDa protein ycf19 29 6.2

>CYK3_YEAST (Q07533) Cytokinesis protein 3|
          Length = 885

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +2

Query: 179 SSPYVTDTFPSHFLHPQALYLFLSHTQFLNPTYIFRCMFALANYLNRFRS 328
           S+ Y+   FPS F +   LY F +   FL  + I+ C   + N +  F S
Sbjct: 634 SALYLPLVFPSFFKNELKLYKFSTALSFLEDSEIYECSLEIPNDVEVFAS 683



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>CKLF4_MOUSE (Q8CJ61) CKLF-like MARVEL transmembrane domain-containing protein 4|
           (Chemokine-like factor superfamily member 4)
          Length = 208

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 19/52 (36%), Positives = 32/52 (61%)
 Frame = -1

Query: 432 LAFIQIFTVVECMRCALSGMYPNVPFISHTAFIHSDLNLFR*LASANMHLKM 277
           +AFI I T++EC  C   G+Y    F+S +AF+ + + L   L S N+H+++
Sbjct: 67  IAFICIETIMECSPC--EGLY-FFEFVSCSAFVVTGVLLI--LFSLNLHMRI 113



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>YCF19_CYACA (Q9TM45) Hypothetical 10.5 kDa protein ycf19|
          Length = 91

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
 Frame = -1

Query: 435 TLAFIQIFTVVECMRCALSGMYPNV-----PFISHTAFIHSDLNLF 313
           T+AF+QI+ V+  +R +L G +PN+     PF S +      LNLF
Sbjct: 12  TIAFLQIYIVLILLRMSL-GWFPNINWYSQPFYSLSQLSDPYLNLF 56


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,349,932
Number of Sequences: 219361
Number of extensions: 1510655
Number of successful extensions: 3218
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3218
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3581144924
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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