ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart28h11 |
|---|---|
| Clone Library Name | barley_pub |
>EXB1A_MAIZE (P58738) Beta-expansin 1a precursor (Pollen allergen Zea m 1) (Zea| m I) Length = 269 Score = 74.3 bits (181), Expect = 1e-13 Identities = 31/56 (55%), Positives = 42/56 (75%) Frame = -2 Query: 453 PMRESWGSIWRLDSGHRLQAPFSMRITNESGKTLVADKVIPANWAPSTFYRSIVQY 286 PM+ SWG+IWR+D+ L+ PFS+R+T+ESGK ++A VIPANW P Y S VQ+ Sbjct: 213 PMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVIAKDVIPANWRPDAVYTSNVQF 268
>EXB1B_MAIZE (Q07154) Beta-expansin 1b (Pollen allergen Zea m 1) (Zea m I)| (Fragment) Length = 191 Score = 73.9 bits (180), Expect = 2e-13 Identities = 30/56 (53%), Positives = 42/56 (75%) Frame = -2 Query: 453 PMRESWGSIWRLDSGHRLQAPFSMRITNESGKTLVADKVIPANWAPSTFYRSIVQY 286 PM+ SWG+IWR+D+ L+ PFS+R+T+ESGK ++A +IPANW P Y S VQ+ Sbjct: 135 PMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVIAKDIIPANWRPDAVYTSNVQF 190
>MPAC1_CYNDA (O04701) Major pollen allergen Cyn d 1| Length = 246 Score = 72.4 bits (176), Expect = 5e-13 Identities = 31/56 (55%), Positives = 40/56 (71%) Frame = -2 Query: 453 PMRESWGSIWRLDSGHRLQAPFSMRITNESGKTLVADKVIPANWAPSTFYRSIVQY 286 PM+ SWG+IWR+D L+ PFS+R+T+E G LV D VIPANW P T Y S +Q+ Sbjct: 189 PMKSSWGAIWRIDPKKPLKGPFSIRLTSEGGAHLVQDDVIPANWKPDTVYTSKLQF 244
>EXPB2_ARATH (Q9SHY6) Putative beta-expansin 2 precursor (AtEXPB2) (At-EXPB2)| (Ath-ExpBeta-1.4) Length = 273 Score = 68.6 bits (166), Expect = 7e-12 Identities = 30/56 (53%), Positives = 41/56 (73%), Gaps = 1/56 (1%) Frame = -2 Query: 450 MRESWGSIWRLDSGHRLQAPFSMRITN-ESGKTLVADKVIPANWAPSTFYRSIVQY 286 M +SWG++W+LD L+AP S+R+T+ ESGKT+VA VIPANW P Y+S V + Sbjct: 218 MSQSWGAVWKLDVSSPLRAPLSLRVTSLESGKTVVASNVIPANWQPGAIYKSNVNF 273
>EXPB4_ARATH (Q9SHD1) Putative beta-expansin 4 precursor (AtEXPB4) (At-EXPB4)| (Ath-ExpBeta-1.1) Length = 259 Score = 58.5 bits (140), Expect = 8e-09 Identities = 27/56 (48%), Positives = 40/56 (71%), Gaps = 1/56 (1%) Frame = -2 Query: 450 MRESWGSIWRLDSGHRLQAPFSMRITN-ESGKTLVADKVIPANWAPSTFYRSIVQY 286 M+E ++W+++SG L+ PF++R+T+ ES K +VA VIPANW P YRSIV + Sbjct: 204 MQEMRSAVWKVNSGSALRGPFNIRLTSGESHKVIVAYNVIPANWKPDESYRSIVNF 259
>MPAP1_PHLPR (P43213) Pollen allergen Phl p 1 precursor (Phl p I)| Length = 263 Score = 56.2 bits (134), Expect = 4e-08 Identities = 23/51 (45%), Positives = 32/51 (62%) Frame = -2 Query: 450 MRESWGSIWRLDSGHRLQAPFSMRITNESGKTLVADKVIPANWAPSTFYRS 298 ++ESWG+IWR+D+ +L PF++R T E G A+ VIP W T Y S Sbjct: 212 LKESWGAIWRIDTPDKLTGPFTVRYTTEGGTKTEAEDVIPEGWKADTSYES 262
>MPAH1_HOLLA (P43216) Major pollen allergen Hol l 1 precursor (Hol l I) (Hol l| 1.0101 and 1.0102) Length = 265 Score = 53.1 bits (126), Expect = 3e-07 Identities = 21/51 (41%), Positives = 32/51 (62%) Frame = -2 Query: 450 MRESWGSIWRLDSGHRLQAPFSMRITNESGKTLVADKVIPANWAPSTFYRS 298 ++ESWG++WR+D+ +L PF++R T E G A+ VIP W T Y + Sbjct: 214 LKESWGAVWRVDTPDKLTGPFTVRYTTEGGTKGEAEDVIPEGWKADTAYEA 264
>MPAL1_LOLPR (P14946) Pollen allergen Lol p 1 precursor (Lol p I) (Allergen R7)| Length = 263 Score = 51.6 bits (122), Expect = 9e-07 Identities = 20/49 (40%), Positives = 30/49 (61%) Frame = -2 Query: 450 MRESWGSIWRLDSGHRLQAPFSMRITNESGKTLVADKVIPANWAPSTFY 304 ++ESWG++WR+D+ +L PF++R T E G + VIP W T Y Sbjct: 212 LKESWGAVWRIDTPDKLTGPFTVRYTTEGGTKSEFEDVIPEGWKADTSY 260
>MPAP1_PHAAQ (Q41260) Major pollen allergen Pha a 1 precursor (Pha a I)| Length = 269 Score = 50.4 bits (119), Expect = 2e-06 Identities = 20/47 (42%), Positives = 29/47 (61%) Frame = -2 Query: 450 MRESWGSIWRLDSGHRLQAPFSMRITNESGKTLVADKVIPANWAPST 310 ++ESWG+IWR+D+ +L PF++R T E G + VIP W T Sbjct: 218 LKESWGAIWRIDTPDKLTGPFTVRYTTEGGTKAEFEDVIPEGWKADT 264
>EXPB5_ARATH (Q9M203) Putative beta-expansin 5 precursor (AtEXPB5) (At-EXPB5)| (Ath-ExpBeta-1.3) Length = 264 Score = 50.1 bits (118), Expect = 3e-06 Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 1/56 (1%) Frame = -2 Query: 450 MRESWGSIWRLDSGHRLQAPFSMRITNE-SGKTLVADKVIPANWAPSTFYRSIVQY 286 M E ++WRL G L+ PF++R+T+ SGK ++A VIP W+P Y S V + Sbjct: 202 MEEMRSAVWRLSPGVPLKGPFNIRLTSAVSGKKIIAKGVIPEKWSPGAIYHSKVNF 257
>EXPB3_ARATH (Q9M0I2) Beta-expansin 3 precursor (AtEXPB3) (At-EXPB3)| (Ath-ExpBeta-1.6) Length = 264 Score = 48.5 bits (114), Expect = 8e-06 Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 1/57 (1%) Frame = -2 Query: 450 MRESWGSIWRLDSGHRLQAPFSMRITNES-GKTLVADKVIPANWAPSTFYRSIVQYS 283 M+ WG+ W + G L+ PFS+++T S GKTL A V+P NWAP Y S + +S Sbjct: 206 MKHVWGANWCIIGGP-LKGPFSIKLTTLSAGKTLSATDVVPRNWAPKATYSSRLNFS 261
>MPAO1_ORYSA (Q40638) Major pollen allergen Ory s 1 precursor (Ory s I)| Length = 263 Score = 46.6 bits (109), Expect = 3e-05 Identities = 18/40 (45%), Positives = 28/40 (70%) Frame = -2 Query: 450 MRESWGSIWRLDSGHRLQAPFSMRITNESGKTLVADKVIP 331 ++ESWG+IWR+D+ L+ PFS+R+T E + A+ IP Sbjct: 209 LKESWGAIWRIDTPKPLKGPFSVRVTTEGARRSSAEDAIP 248
>EXPB1_ARATH (Q9SKU2) Beta-expansin 1 precursor (AtEXPB1) (At-EXPB1)| (Ath-ExpBeta-1.5) Length = 271 Score = 45.8 bits (107), Expect = 5e-05 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%) Frame = -2 Query: 450 MRESWGSIWRLDSGHRLQAPFSMRITNESG-KTLVADKVIPANWAPSTFYRSIVQYS 283 M+ WG+ W + G L+ PFS+++T S KTL A VIP+NW P Y S + +S Sbjct: 213 MKHIWGANWCIVEGP-LKGPFSVKLTTLSNNKTLSATDVIPSNWVPKATYTSRLNFS 268
>MPAL2_LOLPR (P14947) Pollen allergen Lol p 2-A (Lol p II-A)| Length = 97 Score = 37.4 bits (85), Expect = 0.018 Identities = 15/50 (30%), Positives = 28/50 (56%) Frame = -2 Query: 450 MRESWGSIWRLDSGHRLQAPFSMRITNESGKTLVADKVIPANWAPSTFYR 301 ++++ +W + S L+ PF+ R +E G V D V+PA++ T Y+ Sbjct: 46 LKKNGDGVWEIKSDKPLKGPFNFRFVSEKGMRNVFDDVVPADFKVGTTYK 95
>MPAP2_PHLPR (P43214) Pollen allergen Phl p 2 precursor (Phl p II)| Length = 122 Score = 37.0 bits (84), Expect = 0.024 Identities = 17/49 (34%), Positives = 22/49 (44%) Frame = -2 Query: 450 MRESWGSIWRLDSGHRLQAPFSMRITNESGKTLVADKVIPANWAPSTFY 304 M + G +W DS LQ PF+ R E G V D V+P + Y Sbjct: 70 MTKGEGGVWTFDSEEPLQGPFNFRFLTEKGMKNVFDDVVPEKYTIGATY 118
>EXPA8_ARATH (O22874) Alpha-expansin 8 precursor (AtEXPA8) (At-EXP8) (AtEx8)| (Ath-ExpAlpha-1.11) Length = 253 Score = 36.2 bits (82), Expect = 0.040 Identities = 16/43 (37%), Positives = 26/43 (60%) Frame = -2 Query: 450 MRESWGSIWRLDSGHRLQAPFSMRITNESGKTLVADKVIPANW 322 M +WG W+ +S Q+ S ++T G+TLV++ V P+NW Sbjct: 201 MSRNWGQNWQSNSYMNDQS-LSFQVTTSDGRTLVSNDVAPSNW 242
>EXP11_ARATH (Q9LNU3) Alpha-expansin 11 precursor (AtEXPA11) (At-EXP11) (AtEx11)| (Ath-ExpAlpha-1.14) Length = 252 Score = 33.9 bits (76), Expect = 0.20 Identities = 19/55 (34%), Positives = 29/55 (52%) Frame = -2 Query: 450 MRESWGSIWRLDSGHRLQAPFSMRITNESGKTLVADKVIPANWAPSTFYRSIVQY 286 M +WG+ W+ ++ QA S IT G T V V+P++W+ Y S VQ+ Sbjct: 199 MSRNWGANWQSNAYLDGQA-LSFSITTTDGATRVFLNVVPSSWSFGQIYSSNVQF 252
>EXP13_ARATH (Q9M9P0) Alpha-expansin 13 precursor (AtEXPA13) (At-EXP13) (AtEx13)| (Ath-ExpAlpha-1.22) Length = 266 Score = 33.5 bits (75), Expect = 0.26 Identities = 15/44 (34%), Positives = 23/44 (52%) Frame = -2 Query: 453 PMRESWGSIWRLDSGHRLQAPFSMRITNESGKTLVADKVIPANW 322 PM +WG W +++ R QA S +T+ T+ + V P NW Sbjct: 210 PMGRNWGQNWHINADLRNQA-LSFEVTSSDRSTVTSYNVSPKNW 252
>IF2_CORDI (Q6NGN2) Translation initiation factor IF-2| Length = 953 Score = 33.5 bits (75), Expect = 0.26 Identities = 17/37 (45%), Positives = 19/37 (51%) Frame = -3 Query: 443 SRGDQSGGWTPATASRRPSPCASPTSPARRWWPTRSS 333 SR QSGG RRPSP PT P P+RS+ Sbjct: 240 SRSQQSGGQERQGGGRRPSPAMMPTHPNPGQMPSRSN 276
>EXP15_ARATH (O80622) Alpha-expansin 15 precursor (AtEXPA15) (At-EXP15) (AtEx15)| (Ath-ExpAlpha-1.3) Length = 248 Score = 33.5 bits (75), Expect = 0.26 Identities = 14/44 (31%), Positives = 27/44 (61%) Frame = -2 Query: 450 MRESWGSIWRLDSGHRLQAPFSMRITNESGKTLVADKVIPANWA 319 M +WG W+ ++ QA S ++T G+T+V++ + PA+W+ Sbjct: 195 MSRNWGQNWQSNNLLNGQA-LSFKVTASDGRTVVSNNIAPASWS 237
>MPAG3_DACGL (P93124) Pollen allergen Dac g 3 (Dac g III) (Fragment)| Length = 96 Score = 33.1 bits (74), Expect = 0.34 Identities = 15/44 (34%), Positives = 23/44 (52%) Frame = -2 Query: 435 GSIWRLDSGHRLQAPFSMRITNESGKTLVADKVIPANWAPSTFY 304 G++W + S L PF+ R ++ G V D+VIP + T Y Sbjct: 49 GNLWEVKSSKPLTGPFNFRFMSKGGMRNVFDEVIPTAFKIGTTY 92
>EXPL3_ARATH (Q9LZT5) Expansin-like 3 precursor (AtEXPL3) (At-EXPL3)| (Ath-ExpBeta-2.3) Length = 263 Score = 33.1 bits (74), Expect = 0.34 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Frame = -2 Query: 450 MRESWGSIWRLDSGHRLQAPFSMRITNE-SGKTLVADKVIPANWAPSTFYRSIVQ 289 M S G++W D F +T GKT+ + +V+PANW Y + VQ Sbjct: 192 MSRSHGAVWATDKVPTGALQFKFTVTGGYDGKTVWSKRVLPANWNSGRIYDAGVQ 246
>EXP10_ARATH (Q9LDR9) Alpha-expansin 10 precursor (AtEXPA10) (At-EXP10) (AtEx10)| (Ath-ExpAlpha-1.1) Length = 249 Score = 32.7 bits (73), Expect = 0.45 Identities = 15/44 (34%), Positives = 24/44 (54%) Frame = -2 Query: 450 MRESWGSIWRLDSGHRLQAPFSMRITNESGKTLVADKVIPANWA 319 M +WG W+ +S QA S ++T G+T+V+ PA W+ Sbjct: 196 MSRNWGQNWQSNSYLNGQA-LSFKVTTSDGRTVVSFNAAPAGWS 238
>EXPA2_ARATH (Q38866) Alpha-expansin 2 precursor (AtEXPA2) (At-EXP2) (AtEx2)| (Ath-ExpAlpha-1.12) Length = 255 Score = 32.7 bits (73), Expect = 0.45 Identities = 14/43 (32%), Positives = 27/43 (62%) Frame = -2 Query: 450 MRESWGSIWRLDSGHRLQAPFSMRITNESGKTLVADKVIPANW 322 M +WG W+ ++ R Q+ S ++T+ G+T+V+ V+P +W Sbjct: 203 MSRNWGQNWQSNTYLRGQS-LSFQVTDSDGRTVVSYDVVPHDW 244
>EXP14_ARATH (Q9FMA0) Putative alpha-expansin 14 precursor (AtEXPA14) (At-EXP14)| (AtEx14) (Ath-ExpAlpha-1.5) Length = 255 Score = 32.7 bits (73), Expect = 0.45 Identities = 13/44 (29%), Positives = 25/44 (56%) Frame = -2 Query: 450 MRESWGSIWRLDSGHRLQAPFSMRITNESGKTLVADKVIPANWA 319 M +WG W+ ++ QA S ++T G+T++++ P NW+ Sbjct: 199 MSRNWGQNWQSNAKLDGQA-LSFKVTTSDGRTVISNNATPRNWS 241
>EXPA7_ARATH (Q9LN94) Alpha-expansin 7 precursor (AtEXPA7) (At-EXP7) (AtEx7)| (Ath-ExpAlpha-1.26) Length = 262 Score = 31.6 bits (70), Expect = 0.99 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Frame = -2 Query: 450 MRESWGSIWRLDSGHRLQAPFSMRITN-ESGKTLVADKVIPANWAPSTFYRSIVQY 286 M +WG+ ++ S Q+ S R+T+ +G+T+ A V PANW+ Y+S + Sbjct: 207 MSHNWGASYQAFSSLYGQS-LSFRVTSYTTGETIYAWNVAPANWSGGKTYKSTANF 261
>EXPA1_ARATH (Q9C554) Alpha-expansin 1 precursor (AtEXPA1) (At-EXP1) (AtEx1)| (Ath-ExpAlpha-1.2) Length = 250 Score = 31.2 bits (69), Expect = 1.3 Identities = 14/44 (31%), Positives = 25/44 (56%) Frame = -2 Query: 450 MRESWGSIWRLDSGHRLQAPFSMRITNESGKTLVADKVIPANWA 319 M +WG W+ +S Q+ S ++T G+T+V++ V A W+ Sbjct: 197 MSRNWGQNWQSNSYLNGQS-LSFKVTTSDGQTIVSNNVANAGWS 239
>GHRHR_RAT (Q02644) Growth hormone-releasing hormone receptor precursor (GHRH| receptor) (GRF receptor) (GRFR) Length = 464 Score = 30.4 bits (67), Expect = 2.2 Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 4/28 (14%) Frame = +3 Query: 273 SSFSCTGRWSGRRCWAPS----WPG*PC 344 SS C G W G CW P+ W PC Sbjct: 51 SSMGCPGTWDGLLCWPPTGSGQWVSLPC 78
>DSG1_BOVIN (Q03763) Desmoglein-1 precursor (Desmosomal glycoprotein 1) (DG1)| (DGI) (Pemphigus foliaceus antigen) Length = 1043 Score = 30.0 bits (66), Expect = 2.9 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 4/89 (4%) Frame = +2 Query: 149 DTRRPNTLIKNILGSTHAKRSVIVRYQIQPMYAYDSK***VQQLQLYWTMER*KVLGAQL 328 D RP+T ++ ++G + A DSK + L+ TME+ K+LG + Sbjct: 413 DANRPSTTVRYVMGRNPTD-----------LLAIDSKTA-IITLRNKVTMEQYKILGGKY 460 Query: 329 AGMTLSATSVL----PDSLVMRMEKGAWR 403 G LS L ++V+ +E G W+ Sbjct: 461 QGTILSIDDALQRTCTGTIVINLENGGWK 489
>YIBL_AZOVI (P96194) Putative HTH-type transcriptional regulator in ibpB-leuC| intergenic region Length = 144 Score = 29.6 bits (65), Expect = 3.8 Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 15/50 (30%) Frame = -3 Query: 437 GDQSGGWTPATAS-----RRPSPCASPTSPARRW----------WPTRSS 333 GD SG T AT+ R P CA +P RRW WPTR S Sbjct: 87 GDVSGRLTLATSHHIGLHRLPPCCAPSPAPIRRWRWTSASSIRKWPTRRS 136
>EXPL2_ARATH (Q9SVE5) Expansin-like 2 precursor (AtEXPL2) (At-EXPL2)| (Ath-ExpBeta-2.2) Length = 265 Score = 29.3 bits (64), Expect = 4.9 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Frame = -2 Query: 450 MRESWGSIWRLDSGHRLQAPFSMRIT-NESGKTLVADKVIPANWAPSTFYRSIVQ 289 M S G++W D F +T GK + + +V+PANW Y + VQ Sbjct: 193 MTRSHGAVWVTDKVPNGALQFRFVVTAGYDGKMVWSQRVLPANWEAGKSYDAGVQ 247
>MPAL3_LOLPR (P14948) Pollen allergen Lol p 3 (Lol p III)| Length = 97 Score = 29.3 bits (64), Expect = 4.9 Identities = 13/44 (29%), Positives = 21/44 (47%) Frame = -2 Query: 435 GSIWRLDSGHRLQAPFSMRITNESGKTLVADKVIPANWAPSTFY 304 G++W + S L P + R ++ G V D+VIP + Y Sbjct: 49 GNLWEVKSAKPLTGPMNFRFLSKGGMKNVFDEVIPTAFTVGKTY 92
>GHRHR_MOUSE (P32082) Growth hormone-releasing hormone receptor precursor (GHRH| receptor) (GRF receptor) (GRFR) Length = 423 Score = 29.3 bits (64), Expect = 4.9 Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 4/28 (14%) Frame = +3 Query: 273 SSFSCTGRWSGRRCWAPS----WPG*PC 344 +S C G W G CW P+ W PC Sbjct: 51 TSLGCPGTWDGLLCWPPTGSGQWVSLPC 78
>YUXG_BACSU (P40747) Hypothetical oxidoreductase yuxG (EC 1.-.-.-) (ORF2)| Length = 689 Score = 29.3 bits (64), Expect = 4.9 Identities = 15/36 (41%), Positives = 22/36 (61%) Frame = +1 Query: 301 AVEGAGRPVGRDDLVGHQRLAGLVGDAHGEGRLEAV 408 A EG V ++ G Q++AG + DA+G+GR AV Sbjct: 448 AAEGGHVIVADLNIEGAQKIAGEINDAYGKGRAMAV 483
>MURD_SHEVI (Q9F1N2) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC| 6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid-adding enzyme) Length = 449 Score = 28.9 bits (63), Expect = 6.4 Identities = 18/53 (33%), Positives = 27/53 (50%) Frame = -1 Query: 331 GQLGAQHLLPLHRPVQLKLLNSSSFGIICIHWLDLVSYYHGSFCMGTTEDVFD 173 G +G L L +PV L +L SSF + H L+ +S + C+ +ED D Sbjct: 142 GNIGIPVLDLLQKPVDLYILELSSFQLETTHSLNCIS----ATCLNISEDHMD 190
>LARG2_CHICK (Q66PG4) Glycosyltransferase-like protein LARGE2 (EC 2.4.-.-)| (Glycosyltransferase-like 1B) Length = 739 Score = 28.9 bits (63), Expect = 6.4 Identities = 15/23 (65%), Positives = 15/23 (65%), Gaps = 1/23 (4%) Frame = -3 Query: 122 LEYVGGLWRRGTFACA-LPRPPS 57 LEY G L RR F CA LP PPS Sbjct: 388 LEYDGNLLRRELFGCASLPSPPS 410
>GRK_DROME (P42287) Protein gurken precursor| Length = 295 Score = 28.9 bits (63), Expect = 6.4 Identities = 22/76 (28%), Positives = 28/76 (36%), Gaps = 15/76 (19%) Frame = +3 Query: 153 PDDPTP*SKTSSVVPMQND--------P**YDTKSSQCM-------HMIPNDDEFSSFSC 287 P DP+ S S P ND P +S C+ H + N+ F S C Sbjct: 155 PPDPSSSSTPDSTTPSPNDKETEIQMLPCSEAYNTSFCLNGGHCFQHPMVNNTVFHSCLC 214 Query: 288 TGRWSGRRCWAPSWPG 335 + G RC SW G Sbjct: 215 VNDYDGERCAYKSWNG 230
>RL4_PYRHO (O59420) 50S ribosomal protein L4P| Length = 255 Score = 28.5 bits (62), Expect = 8.4 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +1 Query: 319 RPVGRDDLVGHQRLAGLVGDAHGEGRLE 402 +P GRD + G +R+ +G HG R+E Sbjct: 44 QPQGRDPMAGKRRVTENIGKGHGMARVE 71
>RL4_PYRAB (Q9V1T6) 50S ribosomal protein L4P| Length = 255 Score = 28.5 bits (62), Expect = 8.4 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +1 Query: 319 RPVGRDDLVGHQRLAGLVGDAHGEGRLE 402 +P GRD + G +R+ +G HG R+E Sbjct: 44 QPQGRDPMAGKRRVTENIGKGHGMARVE 71
>OXAA_MYCTU (P65626) Membrane protein oxaA| Length = 366 Score = 28.5 bits (62), Expect = 8.4 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 6/34 (17%) Frame = -2 Query: 246 AYIGWIWYRTI------TDRFAWVLPRMFLIKVL 163 ++I W+WYR ++ FAW L MFL+ L Sbjct: 18 SWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTL 51
>OXAA_MYCBO (P65627) Membrane protein oxaA| Length = 366 Score = 28.5 bits (62), Expect = 8.4 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 6/34 (17%) Frame = -2 Query: 246 AYIGWIWYRTI------TDRFAWVLPRMFLIKVL 163 ++I W+WYR ++ FAW L MFL+ L Sbjct: 18 SWIMWVWYRLFAFVLGPSNFFAWALSVMFLVFTL 51 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,595,253 Number of Sequences: 219361 Number of extensions: 1355130 Number of successful extensions: 4439 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 4237 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4431 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
