ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart28h10 |
|---|---|
| Clone Library Name | barley_pub |
>UPS1_ARATH (Q9ZPR7) Ureide permease 1 (AtUPS1)| Length = 390 Score = 118 bits (295), Expect = 8e-27 Identities = 59/91 (64%), Positives = 68/91 (74%) Frame = -1 Query: 463 YLADGEGRGLALLAGMVSGLGNAFTFMXXXXXXXXXADSVQALPLVSTFWGVVLFGEYRR 284 YL D GRG + LAG + G GN FM AD+VQALPLVSTFWG++LFGEYRR Sbjct: 300 YLNDWNGRGWSFLAGFLCGFGNGLQFMGGQAAGYAAADAVQALPLVSTFWGILLFGEYRR 359 Query: 283 SSRRTYTLLGSMLFMFVVAMSVLMASSAHRK 191 SSR+TYTLL SML MF+VA++VLMASS HRK Sbjct: 360 SSRKTYTLLISMLLMFIVAVAVLMASSGHRK 390
>UPS4_ARATH (Q9ZQ88) Ureide permease 4 (AtUPS4)| Length = 401 Score = 115 bits (289), Expect = 4e-26 Identities = 57/91 (62%), Positives = 67/91 (73%) Frame = -1 Query: 463 YLADGEGRGLALLAGMVSGLGNAFTFMXXXXXXXXXADSVQALPLVSTFWGVVLFGEYRR 284 Y+ D +GRG A+ AG + G GN FM ADSVQALPLVSTFWG+VLFGEYR+ Sbjct: 311 YIYDSKGRGWAVFAGFLCGFGNGLQFMGGQAAGYAAADSVQALPLVSTFWGIVLFGEYRK 370 Query: 283 SSRRTYTLLGSMLFMFVVAMSVLMASSAHRK 191 SS+RTY LL SML MFV A+++LMASS HRK Sbjct: 371 SSKRTYALLVSMLAMFVAAVAILMASSGHRK 401
>UPS2_ARATH (Q9ZQ89) Ureide permease 2 (AtUPS2)| Length = 398 Score = 114 bits (286), Expect = 9e-26 Identities = 60/91 (65%), Positives = 65/91 (71%) Frame = -1 Query: 463 YLADGEGRGLALLAGMVSGLGNAFTFMXXXXXXXXXADSVQALPLVSTFWGVVLFGEYRR 284 YL D GR A LAG + G GN FM ADSVQALPLVSTFWGVVLFGEYRR Sbjct: 308 YLNDWNGRYWAFLAGFLCGFGNGLQFMGGQAAGYAAADSVQALPLVSTFWGVVLFGEYRR 367 Query: 283 SSRRTYTLLGSMLFMFVVAMSVLMASSAHRK 191 SSR+TY LL MLFMF+ A++VLMASS HRK Sbjct: 368 SSRKTYLLLFCMLFMFISAVAVLMASSGHRK 398
>UPS5_ARATH (Q93Z75) Ureide permease 5 (AtUPS5)| Length = 413 Score = 107 bits (266), Expect = 2e-23 Identities = 53/91 (58%), Positives = 63/91 (69%) Frame = -1 Query: 463 YLADGEGRGLALLAGMVSGLGNAFTFMXXXXXXXXXADSVQALPLVSTFWGVVLFGEYRR 284 YL+D GRG AL AG++ G GN FM +D+VQALPLVSTFWG+ LFGEYRR Sbjct: 319 YLSDWNGRGWALAAGLLCGFGNGLQFMGGQAAGYAASDAVQALPLVSTFWGIYLFGEYRR 378 Query: 283 SSRRTYTLLGSMLFMFVVAMSVLMASSAHRK 191 SS RTY LL ML MF VA+ +LMAS+ R+ Sbjct: 379 SSTRTYALLVGMLVMFTVAVGLLMASAGERE 409
>UPSA3_VIGUN (Q41706) Probable ureide permease A3 (VuA3) (Fragment)| Length = 376 Score = 62.8 bits (151), Expect = 4e-10 Identities = 33/66 (50%), Positives = 40/66 (60%) Frame = -1 Query: 463 YLADGEGRGLALLAGMVSGLGNAFTFMXXXXXXXXXADSVQALPLVSTFWGVVLFGEYRR 284 YLAD +GR ALLAG++ G GN+ FM + L FWGV+LFGEYRR Sbjct: 310 YLADSDGRIWALLAGLLCGFGNSLQFMGGQAAGYQQQSLCRHF-LCKHFWGVLLFGEYRR 368 Query: 283 SSRRTY 266 SSR+TY Sbjct: 369 SSRKTY 374
>Y2503_LACPL (Q88UI3) Putative sugar uptake protein lp_2503| Length = 285 Score = 41.6 bits (96), Expect = 0.001 Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 2/76 (2%) Frame = -1 Query: 430 LLAGMVSGLGNAFTFMXXXXXXXXXADSVQALPLV-STFWGVVLFGEYRRSSRRTYTLLG 254 ++ G+V G+GN F FM A S+ + +V STF + L GE++ Y ++G Sbjct: 210 IVTGLVWGIGNLFMFMAMAQIGQAVAYSLSQMGIVISTFGSIYLLGEHKTKREMVYVVIG 269 Query: 253 SMLFMF-VVAMSVLMA 209 S+L + VA+S++ A Sbjct: 270 SILVIVGGVALSLMKA 285
>UPS3_ARATH (Q9ZPR6) Ureide permease 3 (AtUPS3)| Length = 344 Score = 33.5 bits (75), Expect = 0.27 Identities = 17/41 (41%), Positives = 20/41 (48%) Frame = -1 Query: 463 YLADGEGRGLALLAGMVSGLGNAFTFMXXXXXXXXXADSVQ 341 YL D GRG + LAG + G GN FM A +VQ Sbjct: 271 YLNDWNGRGWSFLAGFLCGFGNGLQFMGGQAAGYAAAGAVQ 311
>YXFA_LACLA (Q9CDF7) Putative sugar uptake protein yxfA| Length = 295 Score = 32.7 bits (73), Expect = 0.46 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Frame = -1 Query: 430 LLAGMVSGLGNAFTFMXXXXXXXXXADSVQAL-PLVSTFWGVVLFGEYRRSSRRTYTLLG 254 ++ G + G+GN F M A S L +VST G++ GE + Y +G Sbjct: 218 MIVGAMWGVGNIFMLMAASAAGNAIAFSFSQLGVIVSTIGGILFLGEKKTKKELVYVGIG 277 Query: 253 SMLFM 239 +LF+ Sbjct: 278 IVLFV 282
>GCH1_RHOBA (Q7UJJ7) GTP cyclohydrolase I (EC 3.5.4.16) (GTP-CH-I)| Length = 229 Score = 29.6 bits (65), Expect = 3.9 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = +3 Query: 84 YTTSVLIEELASLSAVAIQAPDRHAMHEQRWLRQSGFLCAEEAM 215 +T + LIE+ S VA+ H+ R +R+ G LC AM Sbjct: 163 HTVANLIEDRLSARGVAVVVESTHSCMTMRGIRKPGSLCLTSAM 206
>TDPZ2_MOUSE (Q717B2) TD and POZ domain-containing protein 2| Length = 364 Score = 29.3 bits (64), Expect = 5.1 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 3/45 (6%) Frame = -3 Query: 176 PTLLMHGMA---IGSLDSDGREASKFFDEDGCCVNLDECDACHIL 51 PTL H MA + + D G E K ED C NL +A H L Sbjct: 252 PTLHSHSMACDVLAAADKYGLEGLKVICEDSLCRNLSVENAAHTL 296
>Y2157_STRA5 (Q8DWQ7) Putative sugar uptake protein SAG2157| Length = 288 Score = 29.3 bits (64), Expect = 5.1 Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Frame = -1 Query: 430 LLAGMVSGLGNAFTFMXXXXXXXXXADSVQAL-PLVSTFWGVVLFGEYRRSSRRTYTLLG 254 ++ G++ G+GN F + A S L ++S G++ GE + + + ++G Sbjct: 212 MITGLMWGVGNVFMLLAAAKAGLAIAFSFSQLGVIISIIGGILFLGETKTKKEQKWVVMG 271 Query: 253 SMLFM 239 + F+ Sbjct: 272 ILCFV 276
>Y2116_STRA3 (Q8E2K6) Putative sugar uptake protein gbs2116| Length = 288 Score = 29.3 bits (64), Expect = 5.1 Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Frame = -1 Query: 430 LLAGMVSGLGNAFTFMXXXXXXXXXADSVQAL-PLVSTFWGVVLFGEYRRSSRRTYTLLG 254 ++ G++ G+GN F + A S L ++S G++ GE + + + ++G Sbjct: 212 MITGLMWGVGNVFMLLAAAKAGLAIAFSFSQLGVIISIIGGILFLGETKTKKEQKWVVMG 271 Query: 253 SMLFM 239 + F+ Sbjct: 272 ILCFV 276
>GLCU_BACME (P40419) Probable glucose uptake protein glcU| Length = 286 Score = 28.9 bits (63), Expect = 6.7 Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 1/76 (1%) Frame = -1 Query: 430 LLAGMVSGLGNAFTFMXXXXXXXXXADSVQALPLV-STFWGVVLFGEYRRSSRRTYTLLG 254 ++ G++ GN F F+ + S+ + +V ST G+++ GE + + ++G Sbjct: 211 IIPGLIWAAGNMFLFISQPKVGVATSFSLSQMGIVISTLGGIIILGEKKTKRQLVGIIIG 270 Query: 253 SMLFMFVVAMSVLMAS 206 +L + M L S Sbjct: 271 IILIIIAGVMLGLAKS 286
>TLN1_MOUSE (P26039) Talin-1| Length = 2541 Score = 28.5 bits (62), Expect = 8.7 Identities = 15/47 (31%), Positives = 24/47 (51%) Frame = +3 Query: 177 LRQSGFLCAEEAMSTDMATTNMKSMLPSSVYVLLDDLRYSPNSTTPQ 317 + S L A +A+STD A+ N+KS L ++ + D + T Q Sbjct: 1310 MSSSKLLLAAKALSTDPASPNLKSQLAAAARAVTDSINQLITMCTQQ 1356
>Y220_BACC1 (P61403) Putative sugar uptake protein BCE0220| Length = 283 Score = 28.5 bits (62), Expect = 8.7 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Frame = -1 Query: 427 LAGMVSGLGNAFTFMXXXXXXXXXADSVQALPLV-STFWGVVLFGEYRRSSRRTYTLLGS 251 L+G++ G GN F + + + +V STF +V GE + + + LGS Sbjct: 209 LSGLLWGTGNLFLLLSLPRVGVATSFPLSQTGIVISTFGAIVFLGEKKTKRQLIFIALGS 268 Query: 250 MLFM 239 +L + Sbjct: 269 VLII 272
>Y219_BACCR (Q81IX5) Putative sugar uptake protein BC_0219| Length = 283 Score = 28.5 bits (62), Expect = 8.7 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Frame = -1 Query: 427 LAGMVSGLGNAFTFMXXXXXXXXXADSVQALPLV-STFWGVVLFGEYRRSSRRTYTLLGS 251 L+G++ G GN F + + + +V STF +V GE + + + LGS Sbjct: 209 LSGLLWGTGNLFLLLSLPRVGVATSFPLSQTGIVISTFGAIVFLGEKKTKRQLIFIALGS 268 Query: 250 MLFM 239 +L + Sbjct: 269 VLII 272
>Y200_BACAN (Q81VJ7) Putative sugar uptake protein BA0200/GBAA0200/BAS0200| Length = 283 Score = 28.5 bits (62), Expect = 8.7 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Frame = -1 Query: 427 LAGMVSGLGNAFTFMXXXXXXXXXADSVQALPLV-STFWGVVLFGEYRRSSRRTYTLLGS 251 L+G++ G GN F + + + +V STF +V GE + + + LGS Sbjct: 209 LSGLLWGTGNLFLLLSLPRVGVATSFPLSQTGIVISTFGAIVFLGEKKTKRQLIFIALGS 268 Query: 250 MLFM 239 +L + Sbjct: 269 VLII 272 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,621,310 Number of Sequences: 219361 Number of extensions: 654500 Number of successful extensions: 2054 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2024 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2052 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
