Clone Name | rbart28h07 |
---|---|
Clone Library Name | barley_pub |
>gb|M55685.1|BLYLDHA13 Hordeum vulgare L-lactate dehydrogenase mRNA, complete cds Length = 1298 Score = 759 bits (383), Expect = 0.0 Identities = 389/391 (99%) Strand = Plus / Minus Query: 1 ggcacaaatcgcattttatttcatgaaattaagaggcgttacattactacatcatcccta 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1295 ggcacaaatcgcattttatttcatgaaattaagaggcgttacattactacatcatcccta 1236 Query: 61 agaaaacactcccaaattcgtgtgggagcaggaacagagcaacatatagtactagagttc 120 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 1235 agaaaacactcccaaattcgtgtgggagcaggaacagaacaacatatagtactagagttc 1176 Query: 121 ttgcaaatgcttcatgattttacagcaagtagatcaactggcgttcctcgctcagaggtc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1175 ttgcaaatgcttcatgattttacagcaagtagatcaactggcgttcctcgctcagaggtc 1116 Query: 181 gagaagctggcagttctcccagagcgtcttggcagagcgccggagctgggcggcctcagc 240 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1115 gagaagctggcagttctcccagagcgtcttggcggagcgccggagctgggcggcctcagc 1056 Query: 241 ctcggtgaggtccatctcggcaacaccgaggatgccgccacggcctaggcgggcaggcag 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1055 ctcggtgaggtccatctcggcaacaccgaggatgccgccacggcctaggcgggcaggcag 996 Query: 301 gctgaggaacacctcgtggccgtctgagatgccatggaagcccgaggcaaggacagagac 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 995 gctgaggaacacctcgtggccgtctgagatgccatggaagcccgaggcaaggacagagac 936 Query: 361 agggtgcacgcggcgctggtcgcggaggagg 391 ||||||||||||||||||||||||||||||| Sbjct: 935 agggtgcacgcggcgctggtcgcggaggagg 905
>gb|M55684.1|BLYLDHB12 Hordeum vulgare L-lactate dehydrogenase mRNA, complete cds Length = 1166 Score = 224 bits (113), Expect = 2e-55 Identities = 191/217 (88%) Strand = Plus / Minus Query: 171 ctcagaggtcgagaagctggcagttctcccagagcgtcttggcagagcgccggagctggg 230 |||||||| | || ||||||||||||||||||||||||||||| || || |||||||| | Sbjct: 1037 ctcagaggccaaggagctggcagttctcccagagcgtcttggcggaccggcggagctgcg 978 Query: 231 cggcctcagcctcggtgaggtccatctcggcaacaccgaggatgccgccacggcctaggc 290 ||||||| ||||||||||| |||||||| || || ||||||| |||| | ||||| || | Sbjct: 977 cggcctcggcctcggtgagatccatctcagcgacgccgaggacgccggcgcggccgagcc 918 Query: 291 gggcaggcaggctgaggaacacctcgtggccgtctgagatgccatggaagcccgaggcaa 350 |||| ||||||||||||||||||||||||||||| |||||||| |||||||||| ||| | Sbjct: 917 gggcgggcaggctgaggaacacctcgtggccgtcggagatgccgtggaagcccgcggcga 858 Query: 351 ggacagagacagggtgcacgcggcgctggtcgcggag 387 | || || || |||||||||||||||||||||||||| Sbjct: 857 gcacggacaccgggtgcacgcggcgctggtcgcggag 821
>ref|XM_463814.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1602 Score = 178 bits (90), Expect = 9e-42 Identities = 186/218 (85%) Strand = Plus / Plus Query: 174 agaggtcgagaagctggcagttctcccagagcgtcttggcagagcgccggagctgggcgg 233 |||||||||| ||||||||||||||||||||||||||||| ||||| ||||| || || Sbjct: 20 agaggtcgagcagctggcagttctcccagagcgtcttggcggagcggcggaggcggcggg 79 Query: 234 cctcagcctcggtgaggtccatctcggcaacaccgaggatgccgccacggcctaggcggg 293 |||| |||||||||| ||||||||||| || ||||||| |||| | ||||| ||||||| Sbjct: 80 cctcctcctcggtgagctccatctcggcgacgccgaggacgccggcgcggccgaggcggg 139 Query: 294 caggcaggctgaggaacacctcgtggccgtctgagatgccatggaagcccgaggcaagga 353 | || ||||||||||| ||||||||| | | | |||||| |||||||| ||||| |||| Sbjct: 140 cggggaggctgaggaagacctcgtggtcttgggggatgccgtggaagccggaggcgagga 199 Query: 354 cagagacagggtgcacgcggcgctggtcgcggaggagg 391 | ||||| ||||| | |||| ||||||||||||||||| Sbjct: 200 cggagacggggtggatgcggtgctggtcgcggaggagg 237
>ref|XM_463815.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1414 Score = 178 bits (90), Expect = 9e-42 Identities = 186/218 (85%) Strand = Plus / Minus Query: 174 agaggtcgagaagctggcagttctcccagagcgtcttggcagagcgccggagctgggcgg 233 |||||||||| ||||||||||||||||||||||||||||| ||||| ||||| || || Sbjct: 1170 agaggtcgagcagctggcagttctcccagagcgtcttggcggagcggcggaggcggcggg 1111 Query: 234 cctcagcctcggtgaggtccatctcggcaacaccgaggatgccgccacggcctaggcggg 293 |||| |||||||||| ||||||||||| || ||||||| |||| | ||||| ||||||| Sbjct: 1110 cctcctcctcggtgagctccatctcggcgacgccgaggacgccggcgcggccgaggcggg 1051 Query: 294 caggcaggctgaggaacacctcgtggccgtctgagatgccatggaagcccgaggcaagga 353 | || ||||||||||| ||||||||| | | | |||||| |||||||| ||||| |||| Sbjct: 1050 cggggaggctgaggaagacctcgtggtcttgggggatgccgtggaagccggaggcgagga 991 Query: 354 cagagacagggtgcacgcggcgctggtcgcggaggagg 391 | ||||| ||||| | |||| ||||||||||||||||| Sbjct: 990 cggagacggggtggatgcggtgctggtcgcggaggagg 953
>ref|XM_506679.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1212_C06.24 mRNA Length = 1509 Score = 178 bits (90), Expect = 9e-42 Identities = 186/218 (85%) Strand = Plus / Minus Query: 174 agaggtcgagaagctggcagttctcccagagcgtcttggcagagcgccggagctgggcgg 233 |||||||||| ||||||||||||||||||||||||||||| ||||| ||||| || || Sbjct: 1345 agaggtcgagcagctggcagttctcccagagcgtcttggcggagcggcggaggcggcggg 1286 Query: 234 cctcagcctcggtgaggtccatctcggcaacaccgaggatgccgccacggcctaggcggg 293 |||| |||||||||| ||||||||||| || ||||||| |||| | ||||| ||||||| Sbjct: 1285 cctcctcctcggtgagctccatctcggcgacgccgaggacgccggcgcggccgaggcggg 1226 Query: 294 caggcaggctgaggaacacctcgtggccgtctgagatgccatggaagcccgaggcaagga 353 | || ||||||||||| ||||||||| | | | |||||| |||||||| ||||| |||| Sbjct: 1225 cggggaggctgaggaagacctcgtggtcttgggggatgccgtggaagccggaggcgagga 1166 Query: 354 cagagacagggtgcacgcggcgctggtcgcggaggagg 391 | ||||| ||||| | |||| ||||||||||||||||| Sbjct: 1165 cggagacggggtggatgcggtgctggtcgcggaggagg 1128
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 178 bits (90), Expect = 9e-42 Identities = 186/218 (85%) Strand = Plus / Minus Query: 174 agaggtcgagaagctggcagttctcccagagcgtcttggcagagcgccggagctgggcgg 233 |||||||||| ||||||||||||||||||||||||||||| ||||| ||||| || || Sbjct: 298923 agaggtcgagcagctggcagttctcccagagcgtcttggcggagcggcggaggcggcggg 298864 Query: 234 cctcagcctcggtgaggtccatctcggcaacaccgaggatgccgccacggcctaggcggg 293 |||| |||||||||| ||||||||||| || ||||||| |||| | ||||| ||||||| Sbjct: 298863 cctcctcctcggtgagctccatctcggcgacgccgaggacgccggcgcggccgaggcggg 298804 Query: 294 caggcaggctgaggaacacctcgtggccgtctgagatgccatggaagcccgaggcaagga 353 | || ||||||||||| ||||||||| | | | |||||| |||||||| ||||| |||| Sbjct: 298803 cggggaggctgaggaagacctcgtggtcttgggggatgccgtggaagccggaggcgagga 298744 Query: 354 cagagacagggtgcacgcggcgctggtcgcggaggagg 391 | ||||| ||||| | |||| ||||||||||||||||| Sbjct: 298743 cggagacggggtggatgcggtgctggtcgcggaggagg 298706
>dbj|AP004851.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1359_D06 Length = 146805 Score = 178 bits (90), Expect = 9e-42 Identities = 186/218 (85%) Strand = Plus / Minus Query: 174 agaggtcgagaagctggcagttctcccagagcgtcttggcagagcgccggagctgggcgg 233 |||||||||| ||||||||||||||||||||||||||||| ||||| ||||| || || Sbjct: 27707 agaggtcgagcagctggcagttctcccagagcgtcttggcggagcggcggaggcggcggg 27648 Query: 234 cctcagcctcggtgaggtccatctcggcaacaccgaggatgccgccacggcctaggcggg 293 |||| |||||||||| ||||||||||| || ||||||| |||| | ||||| ||||||| Sbjct: 27647 cctcctcctcggtgagctccatctcggcgacgccgaggacgccggcgcggccgaggcggg 27588 Query: 294 caggcaggctgaggaacacctcgtggccgtctgagatgccatggaagcccgaggcaagga 353 | || ||||||||||| ||||||||| | | | |||||| |||||||| ||||| |||| Sbjct: 27587 cggggaggctgaggaagacctcgtggtcttgggggatgccgtggaagccggaggcgagga 27528 Query: 354 cagagacagggtgcacgcggcgctggtcgcggaggagg 391 | ||||| ||||| | |||| ||||||||||||||||| Sbjct: 27527 cggagacggggtggatgcggtgctggtcgcggaggagg 27490
>dbj|AP004049.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1212_C06 Length = 110989 Score = 178 bits (90), Expect = 9e-42 Identities = 186/218 (85%) Strand = Plus / Minus Query: 174 agaggtcgagaagctggcagttctcccagagcgtcttggcagagcgccggagctgggcgg 233 |||||||||| ||||||||||||||||||||||||||||| ||||| ||||| || || Sbjct: 108898 agaggtcgagcagctggcagttctcccagagcgtcttggcggagcggcggaggcggcggg 108839 Query: 234 cctcagcctcggtgaggtccatctcggcaacaccgaggatgccgccacggcctaggcggg 293 |||| |||||||||| ||||||||||| || ||||||| |||| | ||||| ||||||| Sbjct: 108838 cctcctcctcggtgagctccatctcggcgacgccgaggacgccggcgcggccgaggcggg 108779 Query: 294 caggcaggctgaggaacacctcgtggccgtctgagatgccatggaagcccgaggcaagga 353 | || ||||||||||| ||||||||| | | | |||||| |||||||| ||||| |||| Sbjct: 108778 cggggaggctgaggaagacctcgtggtcttgggggatgccgtggaagccggaggcgagga 108719 Query: 354 cagagacagggtgcacgcggcgctggtcgcggaggagg 391 | ||||| ||||| | |||| ||||||||||||||||| Sbjct: 108718 cggagacggggtggatgcggtgctggtcgcggaggagg 108681
>dbj|AP006720.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, clone:OJA1212_C06 Length = 113554 Score = 178 bits (90), Expect = 9e-42 Identities = 186/218 (85%) Strand = Plus / Minus Query: 174 agaggtcgagaagctggcagttctcccagagcgtcttggcagagcgccggagctgggcgg 233 |||||||||| ||||||||||||||||||||||||||||| ||||| ||||| || || Sbjct: 111463 agaggtcgagcagctggcagttctcccagagcgtcttggcggagcggcggaggcggcggg 111404 Query: 234 cctcagcctcggtgaggtccatctcggcaacaccgaggatgccgccacggcctaggcggg 293 |||| |||||||||| ||||||||||| || ||||||| |||| | ||||| ||||||| Sbjct: 111403 cctcctcctcggtgagctccatctcggcgacgccgaggacgccggcgcggccgaggcggg 111344 Query: 294 caggcaggctgaggaacacctcgtggccgtctgagatgccatggaagcccgaggcaagga 353 | || ||||||||||| ||||||||| | | | |||||| |||||||| ||||| |||| Sbjct: 111343 cggggaggctgaggaagacctcgtggtcttgggggatgccgtggaagccggaggcgagga 111284 Query: 354 cagagacagggtgcacgcggcgctggtcgcggaggagg 391 | ||||| ||||| | |||| ||||||||||||||||| Sbjct: 111283 cggagacggggtggatgcggtgctggtcgcggaggagg 111246
>dbj|AK105416.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-A01, full insert sequence Length = 1414 Score = 178 bits (90), Expect = 9e-42 Identities = 186/218 (85%) Strand = Plus / Minus Query: 174 agaggtcgagaagctggcagttctcccagagcgtcttggcagagcgccggagctgggcgg 233 |||||||||| ||||||||||||||||||||||||||||| ||||| ||||| || || Sbjct: 1170 agaggtcgagcagctggcagttctcccagagcgtcttggcggagcggcggaggcggcggg 1111 Query: 234 cctcagcctcggtgaggtccatctcggcaacaccgaggatgccgccacggcctaggcggg 293 |||| |||||||||| ||||||||||| || ||||||| |||| | ||||| ||||||| Sbjct: 1110 cctcctcctcggtgagctccatctcggcgacgccgaggacgccggcgcggccgaggcggg 1051 Query: 294 caggcaggctgaggaacacctcgtggccgtctgagatgccatggaagcccgaggcaagga 353 | || ||||||||||| ||||||||| | | | |||||| |||||||| ||||| |||| Sbjct: 1050 cggggaggctgaggaagacctcgtggtcttgggggatgccgtggaagccggaggcgagga 991 Query: 354 cagagacagggtgcacgcggcgctggtcgcggaggagg 391 | ||||| ||||| | |||| ||||||||||||||||| Sbjct: 990 cggagacggggtggatgcggtgctggtcgcggaggagg 953
>dbj|AK103257.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124A12, full insert sequence Length = 1510 Score = 178 bits (90), Expect = 9e-42 Identities = 186/218 (85%) Strand = Plus / Minus Query: 174 agaggtcgagaagctggcagttctcccagagcgtcttggcagagcgccggagctgggcgg 233 |||||||||| ||||||||||||||||||||||||||||| ||||| ||||| || || Sbjct: 1345 agaggtcgagcagctggcagttctcccagagcgtcttggcggagcggcggaggcggcggg 1286 Query: 234 cctcagcctcggtgaggtccatctcggcaacaccgaggatgccgccacggcctaggcggg 293 |||| |||||||||| ||||||||||| || ||||||| |||| | ||||| ||||||| Sbjct: 1285 cctcctcctcggtgagctccatctcggcgacgccgaggacgccggcgcggccgaggcggg 1226 Query: 294 caggcaggctgaggaacacctcgtggccgtctgagatgccatggaagcccgaggcaagga 353 | || ||||||||||| ||||||||| | | | |||||| |||||||| ||||| |||| Sbjct: 1225 cggggaggctgaggaagacctcgtggtcttgggggatgccgtggaagccggaggcgagga 1166 Query: 354 cagagacagggtgcacgcggcgctggtcgcggaggagg 391 | ||||| ||||| | |||| ||||||||||||||||| Sbjct: 1165 cggagacggggtggatgcggtgctggtcgcggaggagg 1128
>dbj|D16685.1|RICLT36RGL Oryza sativa (japonica cultivar-group) gene for lactate dehydrogenase, complete cds Length = 5857 Score = 178 bits (90), Expect = 9e-42 Identities = 186/218 (85%) Strand = Plus / Minus Query: 174 agaggtcgagaagctggcagttctcccagagcgtcttggcagagcgccggagctgggcgg 233 |||||||||| ||||||||||||||||||||||||||||| ||||| ||||| || || Sbjct: 5471 agaggtcgagcagctggcagttctcccagagcgtcttggcggagcggcggaggcggcggg 5412 Query: 234 cctcagcctcggtgaggtccatctcggcaacaccgaggatgccgccacggcctaggcggg 293 |||| |||||||||| ||||||||||| || ||||||| |||| | ||||| ||||||| Sbjct: 5411 cctcctcctcggtgagctccatctcggcgacgccgaggacgccggcgcggccgaggcggg 5352 Query: 294 caggcaggctgaggaacacctcgtggccgtctgagatgccatggaagcccgaggcaagga 353 | || ||||||||||| ||||||||| | | | |||||| |||||||| ||||| |||| Sbjct: 5351 cggggaggctgaggaagacctcgtggtcttgggggatgccgtggaagccggaggcgagga 5292 Query: 354 cagagacagggtgcacgcggcgctggtcgcggaggagg 391 | ||||| ||||| | |||| ||||||||||||||||| Sbjct: 5291 cggagacggggtggatgcggtgctggtcgcggaggagg 5254
>dbj|D13817.1|RICLDH Oryza sativa (japonica cultivar-group) mRNA for lactate dehydrogenase, complete cds Length = 1412 Score = 178 bits (90), Expect = 9e-42 Identities = 186/218 (85%) Strand = Plus / Minus Query: 174 agaggtcgagaagctggcagttctcccagagcgtcttggcagagcgccggagctgggcgg 233 |||||||||| ||||||||||||||||||||||||||||| ||||| ||||| || || Sbjct: 1170 agaggtcgagcagctggcagttctcccagagcgtcttggcggagcggcggaggcggcggg 1111 Query: 234 cctcagcctcggtgaggtccatctcggcaacaccgaggatgccgccacggcctaggcggg 293 |||| |||||||||| ||||||||||| || ||||||| |||| | ||||| ||||||| Sbjct: 1110 cctcctcctcggtgagctccatctcggcgacgccgaggacgccggcgcggccgaggcggg 1051 Query: 294 caggcaggctgaggaacacctcgtggccgtctgagatgccatggaagcccgaggcaagga 353 | || ||||||||||| ||||||||| | | | |||||| |||||||| ||||| |||| Sbjct: 1050 cggggaggctgaggaagacctcgtggtcttgggggatgccgtggaagccggaggcgagga 991 Query: 354 cagagacagggtgcacgcggcgctggtcgcggaggagg 391 | ||||| ||||| | |||| ||||||||||||||||| Sbjct: 990 cggagacggggtggatgcggtgctggtcgcggaggagg 953
>dbj|AK106891.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-G06, full insert sequence Length = 1601 Score = 170 bits (86), Expect = 2e-39 Identities = 185/218 (84%) Strand = Plus / Plus Query: 174 agaggtcgagaagctggcagttctcccagagcgtcttggcagagcgccggagctgggcgg 233 |||||||||| ||||||||||||||||||||||||||||| ||||| ||||| || || Sbjct: 20 agaggtcgagcagctggcagttctcccagagcgtcttggcggagcggcggaggcggcggg 79 Query: 234 cctcagcctcggtgaggtccatctcggcaacaccgaggatgccgccacggcctaggcggg 293 |||| |||||||||| ||||||||||| || ||||||| |||| | ||||| ||||||| Sbjct: 80 cctcctcctcggtgagctccatctcggcgacgccgaggacgccggcgcggccgaggcggg 139 Query: 294 caggcaggctgaggaacacctcgtggccgtctgagatgccatggaagcccgaggcaagga 353 | || ||||||||||| ||||||||| | | | |||||| |||||||| ||||| |||| Sbjct: 140 cggggaggctgaggaagacctcgtggtcttgggggatgccgtggaagccggaggcgagga 199 Query: 354 cagagacagggtgcacgcggcgctggtcgcggaggagg 391 ||||| ||||| | |||| ||||||||||||||||| Sbjct: 200 tggagacggggtggatgcggtgctggtcgcggaggagg 237
>gb|AY109690.1| Zea mays CL2158_1 mRNA sequence Length = 1496 Score = 60.0 bits (30), Expect = 6e-06 Identities = 75/90 (83%) Strand = Plus / Minus Query: 172 tcagaggtcgagaagctggcagttctcccagagcgtcttggcagagcgccggagctgggc 231 ||||||| |||| ||||||||||||||||||| |||||||| ||||| || || | Sbjct: 1135 tcagaggccgaggagctggcagttctcccagatggtcttggcggagcggcgcagtcgttt 1076 Query: 232 ggcctcagcctcggtgaggtccatctcggc 261 |||||| |||||||||| ||||||||||| Sbjct: 1075 ggcctcctcctcggtgagctccatctcggc 1046
>emb|Z11754.1|ZMLACDEHG Z.mays gene for lactate dehydrogenase Length = 2999 Score = 56.0 bits (28), Expect = 9e-05 Identities = 172/216 (79%), Gaps = 3/216 (1%) Strand = Plus / Minus Query: 172 tcagaggtcgagaagctggcagttctcccagagcgtcttggcagagcgccggagctgggc 231 ||||||| |||| ||||||||||||||||||| |||||||| ||||| || || | Sbjct: 2525 tcagaggccgaggagctggcagttctcccagatggtcttggcggagcggcgcagtcgttt 2466 Query: 232 ggcctcagcctcggtgaggtccatctcggcaacaccgaggatgccgccacggcctaggcg 291 |||||| |||||||||| ||||||||| | || || ||| |||| | ||||| | | | Sbjct: 2465 ggcctcctcctcggtgagctccatctcg-cgacgccctggacgccggcgcggccgacgtg 2407 Query: 292 ggcaggcaggctgaggaacacctcgtggccgtctgagatgccatggaagcccgaggcaag 351 | | |||||||||||||| || |||| ||||| | |||||| ||||| ||| ||| || Sbjct: 2406 g-cgggcaggctgaggaagacgtcgtt-ccgtcggggatgccgtggaaccccctggcgag 2349 Query: 352 gacagagacagggtgcacgcggcgctggtcgcggag 387 ||| ||||| ||||| | |||||||||||| ||||| Sbjct: 2348 gacggagaccgggtggatgcggcgctggtcccggag 2313
>gb|AC150573.4| Bos taurus BAC CH240-238N22 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 163445 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Plus Query: 132 tcatgattttacagcaagtagatcaa 157 ||||||||| |||||||||||||||| Sbjct: 5002 tcatgatttgacagcaagtagatcaa 5027
>gb|AC146604.5| Mus musculus BAC clone RP23-306G1 from chromosome 13, complete sequence Length = 213725 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 121 ttgcaaatgcttcatgatttta 142 |||||||||||||||||||||| Sbjct: 88131 ttgcaaatgcttcatgatttta 88110
>gb|AC134608.3| Mus musculus BAC clone RP23-68H13 from 13, complete sequence Length = 253539 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 121 ttgcaaatgcttcatgatttta 142 |||||||||||||||||||||| Sbjct: 26954 ttgcaaatgcttcatgatttta 26933
>gb|AC107752.8| Mus musculus chromosome 10, clone RP23-244J13, complete sequence Length = 208458 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 88 gcaggaacagagcaacatata 108 ||||||||||||||||||||| Sbjct: 125470 gcaggaacagagcaacatata 125490
>gb|AC157991.5| Mus musculus chromosome 18, clone RP23-335B10, complete sequence Length = 198636 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 130 cttcatgattttacagcaagt 150 ||||||||||||||||||||| Sbjct: 139350 cttcatgattttacagcaagt 139330
>gb|AC102155.10| Mus musculus chromosome 18, clone RP23-334J12, complete sequence Length = 189666 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 130 cttcatgattttacagcaagt 150 ||||||||||||||||||||| Sbjct: 159283 cttcatgattttacagcaagt 159303
>emb|CR719969.2|CNS0GIH3 Tetraodon nigroviridis full-length cDNA Length = 1046 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 296 ggcaggctgaggaacacctcg 316 ||||||||||||||||||||| Sbjct: 463 ggcaggctgaggaacacctcg 443
>gb|AC011944.12| Homo sapiens chromosome 15, clone RP11-16K12, complete sequence Length = 166309 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 282 ggcctaggcgggcaggcaggc 302 ||||||||||||||||||||| Sbjct: 22119 ggcctaggcgggcaggcaggc 22139
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 364 gtgcacgcggcgctggtcgcg 384 ||||||||||||||||||||| Sbjct: 2340330 gtgcacgcggcgctggtcgcg 2340310
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 368 acgcggcgctggtcgcggagg 388 ||||||||||||||||||||| Sbjct: 3981830 acgcggcgctggtcgcggagg 3981850
>gb|AC136956.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0038B22, complete sequence Length = 177557 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 aaatgcttcatgattttaca 144 |||||||||||||||||||| Sbjct: 163564 aaatgcttcatgattttaca 163545
>gb|AC165174.2| Zea mays clone ZMMBBb-127F19, complete sequence Length = 187659 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 tcggtgaggtccatctcggc 261 |||||||||||||||||||| Sbjct: 129154 tcggtgaggtccatctcggc 129173
>gb|AC139853.17| Medicago truncatula clone mth2-13d20, complete sequence Length = 93375 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 4 acaaatcgcattttatttcatgaaatta 31 |||||| |||||||||||||| |||||| Sbjct: 27130 acaaatagcattttatttcataaaatta 27103
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 cctcggtgaggtccatctcg 259 |||||||||||||||||||| Sbjct: 2484511 cctcggtgaggtccatctcg 2484530
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 5.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 229 ggcggcctcagcctcggtgaggtccatctcgg 260 |||||||||||||||| | || |||||||||| Sbjct: 2429741 ggcggcctcagcctcgatcagctccatctcgg 2429710
>emb|AL035250.20|HS614C15 Human DNA sequence from clone RP4-614C15 on chromosome 20q13.2-13.33 Contains the EDN3 gene for endothelin 3, ESTs, STSs, GSS and a CpG island, complete sequence Length = 105325 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 aaggacagagacagggtgca 368 |||||||||||||||||||| Sbjct: 12201 aaggacagagacagggtgca 12182
>emb|BX901919.8| Zebrafish DNA sequence from clone DKEY-30I6 in linkage group 25, complete sequence Length = 233401 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 agatcaactggcgttcctcg 170 |||||||||||||||||||| Sbjct: 175409 agatcaactggcgttcctcg 175390
>gb|AC174824.3| Cavia porcellus clone CH234-33F4, complete sequence Length = 176892 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 attttatttcatgaaattaa 32 |||||||||||||||||||| Sbjct: 159209 attttatttcatgaaattaa 159228
>gb|AC007542.3| Homo sapiens 12p12 BAC RPCI11-320J20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 162081 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 gaggcaaggacagagacagg 363 |||||||||||||||||||| Sbjct: 101653 gaggcaaggacagagacagg 101672
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 aaatgcttcatgattttaca 144 |||||||||||||||||||| Sbjct: 19986497 aaatgcttcatgattttaca 19986478
>emb|AL110479.1|CEY105C5B Caenorhabditis elegans YAC Y105C5B, complete sequence Length = 321304 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 attttatttcatgaaattaa 32 |||||||||||||||||||| Sbjct: 106818 attttatttcatgaaattaa 106837
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 aaatgcttcatgattttaca 144 |||||||||||||||||||| Sbjct: 20271476 aaatgcttcatgattttaca 20271457 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,504,763 Number of Sequences: 3902068 Number of extensions: 4504763 Number of successful extensions: 67774 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67449 Number of HSP's gapped (non-prelim): 311 length of query: 391 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 369 effective length of database: 17,147,199,772 effective search space: 6327316715868 effective search space used: 6327316715868 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)