ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart28h07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|M55685.1|BLYLDHA13 Hordeum vulgare L-lactate dehydrogenase mR... 759 0.0
2gb|M55684.1|BLYLDHB12 Hordeum vulgare L-lactate dehydrogenase mR... 224 2e-55
3ref|XM_463814.1| Oryza sativa (japonica cultivar-group), mRNA 178 9e-42
4ref|XM_463815.1| Oryza sativa (japonica cultivar-group), mRNA 178 9e-42
5ref|XM_506679.1| PREDICTED Oryza sativa (japonica cultivar-group... 178 9e-42
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 178 9e-42
7dbj|AP004851.3| Oryza sativa (japonica cultivar-group) genomic D... 178 9e-42
8dbj|AP004049.2| Oryza sativa (japonica cultivar-group) genomic D... 178 9e-42
9dbj|AP006720.1| Oryza sativa (japonica cultivar-group) genomic D... 178 9e-42
10dbj|AK105416.1| Oryza sativa (japonica cultivar-group) cDNA clon... 178 9e-42
11dbj|AK103257.1| Oryza sativa (japonica cultivar-group) cDNA clon... 178 9e-42
12dbj|D16685.1|RICLT36RGL Oryza sativa (japonica cultivar-group) g... 178 9e-42
13dbj|D13817.1|RICLDH Oryza sativa (japonica cultivar-group) mRNA ... 178 9e-42
14dbj|AK106891.1| Oryza sativa (japonica cultivar-group) cDNA clon... 170 2e-39
15gb|AY109690.1| Zea mays CL2158_1 mRNA sequence 60 6e-06
16emb|Z11754.1|ZMLACDEHG Z.mays gene for lactate dehydrogenase 56 9e-05
17gb|AC150573.4| Bos taurus BAC CH240-238N22 (Children's Hospital... 44 0.33
18gb|AC146604.5| Mus musculus BAC clone RP23-306G1 from chromosome... 44 0.33
19gb|AC134608.3| Mus musculus BAC clone RP23-68H13 from 13, comple... 44 0.33
20gb|AC107752.8| Mus musculus chromosome 10, clone RP23-244J13, co... 42 1.3
21gb|AC157991.5| Mus musculus chromosome 18, clone RP23-335B10, co... 42 1.3
22gb|AC102155.10| Mus musculus chromosome 18, clone RP23-334J12, c... 42 1.3
23emb|CR719969.2|CNS0GIH3 Tetraodon nigroviridis full-length cDNA 42 1.3
24gb|AC011944.12| Homo sapiens chromosome 15, clone RP11-16K12, co... 42 1.3
25gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 42 1.3
26gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 1.3
27gb|AC136956.4| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
28gb|AC165174.2| Zea mays clone ZMMBBb-127F19, complete sequence 40 5.2
29gb|AC139853.17| Medicago truncatula clone mth2-13d20, complete s... 40 5.2
30gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 5.2
31gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 5.2
32emb|AL035250.20|HS614C15 Human DNA sequence from clone RP4-614C1... 40 5.2
33emb|BX901919.8| Zebrafish DNA sequence from clone DKEY-30I6 in l... 40 5.2
34gb|AC174824.3| Cavia porcellus clone CH234-33F4, complete sequence 40 5.2
35gb|AC007542.3| Homo sapiens 12p12 BAC RPCI11-320J20 (Roswell Par... 40 5.2
36dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
37emb|AL110479.1|CEY105C5B Caenorhabditis elegans YAC Y105C5B, com... 40 5.2
38gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2

>gb|M55685.1|BLYLDHA13 Hordeum vulgare L-lactate dehydrogenase mRNA, complete cds
          Length = 1298

 Score =  759 bits (383), Expect = 0.0
 Identities = 389/391 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    ggcacaaatcgcattttatttcatgaaattaagaggcgttacattactacatcatcccta 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1295 ggcacaaatcgcattttatttcatgaaattaagaggcgttacattactacatcatcccta 1236

                                                                        
Query: 61   agaaaacactcccaaattcgtgtgggagcaggaacagagcaacatatagtactagagttc 120
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1235 agaaaacactcccaaattcgtgtgggagcaggaacagaacaacatatagtactagagttc 1176

                                                                        
Query: 121  ttgcaaatgcttcatgattttacagcaagtagatcaactggcgttcctcgctcagaggtc 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1175 ttgcaaatgcttcatgattttacagcaagtagatcaactggcgttcctcgctcagaggtc 1116

                                                                        
Query: 181  gagaagctggcagttctcccagagcgtcttggcagagcgccggagctgggcggcctcagc 240
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1115 gagaagctggcagttctcccagagcgtcttggcggagcgccggagctgggcggcctcagc 1056

                                                                        
Query: 241  ctcggtgaggtccatctcggcaacaccgaggatgccgccacggcctaggcgggcaggcag 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1055 ctcggtgaggtccatctcggcaacaccgaggatgccgccacggcctaggcgggcaggcag 996

                                                                        
Query: 301  gctgaggaacacctcgtggccgtctgagatgccatggaagcccgaggcaaggacagagac 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 995  gctgaggaacacctcgtggccgtctgagatgccatggaagcccgaggcaaggacagagac 936

                                           
Query: 361  agggtgcacgcggcgctggtcgcggaggagg 391
            |||||||||||||||||||||||||||||||
Sbjct: 935  agggtgcacgcggcgctggtcgcggaggagg 905



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>gb|M55684.1|BLYLDHB12 Hordeum vulgare L-lactate dehydrogenase mRNA, complete cds
          Length = 1166

 Score =  224 bits (113), Expect = 2e-55
 Identities = 191/217 (88%)
 Strand = Plus / Minus

                                                                        
Query: 171  ctcagaggtcgagaagctggcagttctcccagagcgtcttggcagagcgccggagctggg 230
            |||||||| | || ||||||||||||||||||||||||||||| || || |||||||| |
Sbjct: 1037 ctcagaggccaaggagctggcagttctcccagagcgtcttggcggaccggcggagctgcg 978

                                                                        
Query: 231  cggcctcagcctcggtgaggtccatctcggcaacaccgaggatgccgccacggcctaggc 290
            ||||||| ||||||||||| |||||||| || || ||||||| |||| | ||||| || |
Sbjct: 977  cggcctcggcctcggtgagatccatctcagcgacgccgaggacgccggcgcggccgagcc 918

                                                                        
Query: 291  gggcaggcaggctgaggaacacctcgtggccgtctgagatgccatggaagcccgaggcaa 350
            |||| ||||||||||||||||||||||||||||| |||||||| |||||||||| ||| |
Sbjct: 917  gggcgggcaggctgaggaacacctcgtggccgtcggagatgccgtggaagcccgcggcga 858

                                                 
Query: 351  ggacagagacagggtgcacgcggcgctggtcgcggag 387
            | || || || ||||||||||||||||||||||||||
Sbjct: 857  gcacggacaccgggtgcacgcggcgctggtcgcggag 821



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>ref|XM_463814.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1602

 Score =  178 bits (90), Expect = 9e-42
 Identities = 186/218 (85%)
 Strand = Plus / Plus

                                                                       
Query: 174 agaggtcgagaagctggcagttctcccagagcgtcttggcagagcgccggagctgggcgg 233
           |||||||||| ||||||||||||||||||||||||||||| ||||| |||||  ||  ||
Sbjct: 20  agaggtcgagcagctggcagttctcccagagcgtcttggcggagcggcggaggcggcggg 79

                                                                       
Query: 234 cctcagcctcggtgaggtccatctcggcaacaccgaggatgccgccacggcctaggcggg 293
           ||||  |||||||||| ||||||||||| || ||||||| |||| | ||||| |||||||
Sbjct: 80  cctcctcctcggtgagctccatctcggcgacgccgaggacgccggcgcggccgaggcggg 139

                                                                       
Query: 294 caggcaggctgaggaacacctcgtggccgtctgagatgccatggaagcccgaggcaagga 353
           | || ||||||||||| ||||||||| | |  | |||||| |||||||| ||||| ||||
Sbjct: 140 cggggaggctgaggaagacctcgtggtcttgggggatgccgtggaagccggaggcgagga 199

                                                 
Query: 354 cagagacagggtgcacgcggcgctggtcgcggaggagg 391
           | ||||| ||||| | |||| |||||||||||||||||
Sbjct: 200 cggagacggggtggatgcggtgctggtcgcggaggagg 237



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>ref|XM_463815.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1414

 Score =  178 bits (90), Expect = 9e-42
 Identities = 186/218 (85%)
 Strand = Plus / Minus

                                                                        
Query: 174  agaggtcgagaagctggcagttctcccagagcgtcttggcagagcgccggagctgggcgg 233
            |||||||||| ||||||||||||||||||||||||||||| ||||| |||||  ||  ||
Sbjct: 1170 agaggtcgagcagctggcagttctcccagagcgtcttggcggagcggcggaggcggcggg 1111

                                                                        
Query: 234  cctcagcctcggtgaggtccatctcggcaacaccgaggatgccgccacggcctaggcggg 293
            ||||  |||||||||| ||||||||||| || ||||||| |||| | ||||| |||||||
Sbjct: 1110 cctcctcctcggtgagctccatctcggcgacgccgaggacgccggcgcggccgaggcggg 1051

                                                                        
Query: 294  caggcaggctgaggaacacctcgtggccgtctgagatgccatggaagcccgaggcaagga 353
            | || ||||||||||| ||||||||| | |  | |||||| |||||||| ||||| ||||
Sbjct: 1050 cggggaggctgaggaagacctcgtggtcttgggggatgccgtggaagccggaggcgagga 991

                                                  
Query: 354  cagagacagggtgcacgcggcgctggtcgcggaggagg 391
            | ||||| ||||| | |||| |||||||||||||||||
Sbjct: 990  cggagacggggtggatgcggtgctggtcgcggaggagg 953



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>ref|XM_506679.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1212_C06.24 mRNA
          Length = 1509

 Score =  178 bits (90), Expect = 9e-42
 Identities = 186/218 (85%)
 Strand = Plus / Minus

                                                                        
Query: 174  agaggtcgagaagctggcagttctcccagagcgtcttggcagagcgccggagctgggcgg 233
            |||||||||| ||||||||||||||||||||||||||||| ||||| |||||  ||  ||
Sbjct: 1345 agaggtcgagcagctggcagttctcccagagcgtcttggcggagcggcggaggcggcggg 1286

                                                                        
Query: 234  cctcagcctcggtgaggtccatctcggcaacaccgaggatgccgccacggcctaggcggg 293
            ||||  |||||||||| ||||||||||| || ||||||| |||| | ||||| |||||||
Sbjct: 1285 cctcctcctcggtgagctccatctcggcgacgccgaggacgccggcgcggccgaggcggg 1226

                                                                        
Query: 294  caggcaggctgaggaacacctcgtggccgtctgagatgccatggaagcccgaggcaagga 353
            | || ||||||||||| ||||||||| | |  | |||||| |||||||| ||||| ||||
Sbjct: 1225 cggggaggctgaggaagacctcgtggtcttgggggatgccgtggaagccggaggcgagga 1166

                                                  
Query: 354  cagagacagggtgcacgcggcgctggtcgcggaggagg 391
            | ||||| ||||| | |||| |||||||||||||||||
Sbjct: 1165 cggagacggggtggatgcggtgctggtcgcggaggagg 1128



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score =  178 bits (90), Expect = 9e-42
 Identities = 186/218 (85%)
 Strand = Plus / Minus

                                                                          
Query: 174    agaggtcgagaagctggcagttctcccagagcgtcttggcagagcgccggagctgggcgg 233
              |||||||||| ||||||||||||||||||||||||||||| ||||| |||||  ||  ||
Sbjct: 298923 agaggtcgagcagctggcagttctcccagagcgtcttggcggagcggcggaggcggcggg 298864

                                                                          
Query: 234    cctcagcctcggtgaggtccatctcggcaacaccgaggatgccgccacggcctaggcggg 293
              ||||  |||||||||| ||||||||||| || ||||||| |||| | ||||| |||||||
Sbjct: 298863 cctcctcctcggtgagctccatctcggcgacgccgaggacgccggcgcggccgaggcggg 298804

                                                                          
Query: 294    caggcaggctgaggaacacctcgtggccgtctgagatgccatggaagcccgaggcaagga 353
              | || ||||||||||| ||||||||| | |  | |||||| |||||||| ||||| ||||
Sbjct: 298803 cggggaggctgaggaagacctcgtggtcttgggggatgccgtggaagccggaggcgagga 298744

                                                    
Query: 354    cagagacagggtgcacgcggcgctggtcgcggaggagg 391
              | ||||| ||||| | |||| |||||||||||||||||
Sbjct: 298743 cggagacggggtggatgcggtgctggtcgcggaggagg 298706



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>dbj|AP004851.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1359_D06
          Length = 146805

 Score =  178 bits (90), Expect = 9e-42
 Identities = 186/218 (85%)
 Strand = Plus / Minus

                                                                         
Query: 174   agaggtcgagaagctggcagttctcccagagcgtcttggcagagcgccggagctgggcgg 233
             |||||||||| ||||||||||||||||||||||||||||| ||||| |||||  ||  ||
Sbjct: 27707 agaggtcgagcagctggcagttctcccagagcgtcttggcggagcggcggaggcggcggg 27648

                                                                         
Query: 234   cctcagcctcggtgaggtccatctcggcaacaccgaggatgccgccacggcctaggcggg 293
             ||||  |||||||||| ||||||||||| || ||||||| |||| | ||||| |||||||
Sbjct: 27647 cctcctcctcggtgagctccatctcggcgacgccgaggacgccggcgcggccgaggcggg 27588

                                                                         
Query: 294   caggcaggctgaggaacacctcgtggccgtctgagatgccatggaagcccgaggcaagga 353
             | || ||||||||||| ||||||||| | |  | |||||| |||||||| ||||| ||||
Sbjct: 27587 cggggaggctgaggaagacctcgtggtcttgggggatgccgtggaagccggaggcgagga 27528

                                                   
Query: 354   cagagacagggtgcacgcggcgctggtcgcggaggagg 391
             | ||||| ||||| | |||| |||||||||||||||||
Sbjct: 27527 cggagacggggtggatgcggtgctggtcgcggaggagg 27490



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>dbj|AP004049.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1212_C06
          Length = 110989

 Score =  178 bits (90), Expect = 9e-42
 Identities = 186/218 (85%)
 Strand = Plus / Minus

                                                                          
Query: 174    agaggtcgagaagctggcagttctcccagagcgtcttggcagagcgccggagctgggcgg 233
              |||||||||| ||||||||||||||||||||||||||||| ||||| |||||  ||  ||
Sbjct: 108898 agaggtcgagcagctggcagttctcccagagcgtcttggcggagcggcggaggcggcggg 108839

                                                                          
Query: 234    cctcagcctcggtgaggtccatctcggcaacaccgaggatgccgccacggcctaggcggg 293
              ||||  |||||||||| ||||||||||| || ||||||| |||| | ||||| |||||||
Sbjct: 108838 cctcctcctcggtgagctccatctcggcgacgccgaggacgccggcgcggccgaggcggg 108779

                                                                          
Query: 294    caggcaggctgaggaacacctcgtggccgtctgagatgccatggaagcccgaggcaagga 353
              | || ||||||||||| ||||||||| | |  | |||||| |||||||| ||||| ||||
Sbjct: 108778 cggggaggctgaggaagacctcgtggtcttgggggatgccgtggaagccggaggcgagga 108719

                                                    
Query: 354    cagagacagggtgcacgcggcgctggtcgcggaggagg 391
              | ||||| ||||| | |||| |||||||||||||||||
Sbjct: 108718 cggagacggggtggatgcggtgctggtcgcggaggagg 108681



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>dbj|AP006720.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              clone:OJA1212_C06
          Length = 113554

 Score =  178 bits (90), Expect = 9e-42
 Identities = 186/218 (85%)
 Strand = Plus / Minus

                                                                          
Query: 174    agaggtcgagaagctggcagttctcccagagcgtcttggcagagcgccggagctgggcgg 233
              |||||||||| ||||||||||||||||||||||||||||| ||||| |||||  ||  ||
Sbjct: 111463 agaggtcgagcagctggcagttctcccagagcgtcttggcggagcggcggaggcggcggg 111404

                                                                          
Query: 234    cctcagcctcggtgaggtccatctcggcaacaccgaggatgccgccacggcctaggcggg 293
              ||||  |||||||||| ||||||||||| || ||||||| |||| | ||||| |||||||
Sbjct: 111403 cctcctcctcggtgagctccatctcggcgacgccgaggacgccggcgcggccgaggcggg 111344

                                                                          
Query: 294    caggcaggctgaggaacacctcgtggccgtctgagatgccatggaagcccgaggcaagga 353
              | || ||||||||||| ||||||||| | |  | |||||| |||||||| ||||| ||||
Sbjct: 111343 cggggaggctgaggaagacctcgtggtcttgggggatgccgtggaagccggaggcgagga 111284

                                                    
Query: 354    cagagacagggtgcacgcggcgctggtcgcggaggagg 391
              | ||||| ||||| | |||| |||||||||||||||||
Sbjct: 111283 cggagacggggtggatgcggtgctggtcgcggaggagg 111246



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>dbj|AK105416.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-A01, full
            insert sequence
          Length = 1414

 Score =  178 bits (90), Expect = 9e-42
 Identities = 186/218 (85%)
 Strand = Plus / Minus

                                                                        
Query: 174  agaggtcgagaagctggcagttctcccagagcgtcttggcagagcgccggagctgggcgg 233
            |||||||||| ||||||||||||||||||||||||||||| ||||| |||||  ||  ||
Sbjct: 1170 agaggtcgagcagctggcagttctcccagagcgtcttggcggagcggcggaggcggcggg 1111

                                                                        
Query: 234  cctcagcctcggtgaggtccatctcggcaacaccgaggatgccgccacggcctaggcggg 293
            ||||  |||||||||| ||||||||||| || ||||||| |||| | ||||| |||||||
Sbjct: 1110 cctcctcctcggtgagctccatctcggcgacgccgaggacgccggcgcggccgaggcggg 1051

                                                                        
Query: 294  caggcaggctgaggaacacctcgtggccgtctgagatgccatggaagcccgaggcaagga 353
            | || ||||||||||| ||||||||| | |  | |||||| |||||||| ||||| ||||
Sbjct: 1050 cggggaggctgaggaagacctcgtggtcttgggggatgccgtggaagccggaggcgagga 991

                                                  
Query: 354  cagagacagggtgcacgcggcgctggtcgcggaggagg 391
            | ||||| ||||| | |||| |||||||||||||||||
Sbjct: 990  cggagacggggtggatgcggtgctggtcgcggaggagg 953



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>dbj|AK103257.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124A12, full
            insert sequence
          Length = 1510

 Score =  178 bits (90), Expect = 9e-42
 Identities = 186/218 (85%)
 Strand = Plus / Minus

                                                                        
Query: 174  agaggtcgagaagctggcagttctcccagagcgtcttggcagagcgccggagctgggcgg 233
            |||||||||| ||||||||||||||||||||||||||||| ||||| |||||  ||  ||
Sbjct: 1345 agaggtcgagcagctggcagttctcccagagcgtcttggcggagcggcggaggcggcggg 1286

                                                                        
Query: 234  cctcagcctcggtgaggtccatctcggcaacaccgaggatgccgccacggcctaggcggg 293
            ||||  |||||||||| ||||||||||| || ||||||| |||| | ||||| |||||||
Sbjct: 1285 cctcctcctcggtgagctccatctcggcgacgccgaggacgccggcgcggccgaggcggg 1226

                                                                        
Query: 294  caggcaggctgaggaacacctcgtggccgtctgagatgccatggaagcccgaggcaagga 353
            | || ||||||||||| ||||||||| | |  | |||||| |||||||| ||||| ||||
Sbjct: 1225 cggggaggctgaggaagacctcgtggtcttgggggatgccgtggaagccggaggcgagga 1166

                                                  
Query: 354  cagagacagggtgcacgcggcgctggtcgcggaggagg 391
            | ||||| ||||| | |||| |||||||||||||||||
Sbjct: 1165 cggagacggggtggatgcggtgctggtcgcggaggagg 1128



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>dbj|D16685.1|RICLT36RGL Oryza sativa (japonica cultivar-group) gene for lactate
            dehydrogenase, complete cds
          Length = 5857

 Score =  178 bits (90), Expect = 9e-42
 Identities = 186/218 (85%)
 Strand = Plus / Minus

                                                                        
Query: 174  agaggtcgagaagctggcagttctcccagagcgtcttggcagagcgccggagctgggcgg 233
            |||||||||| ||||||||||||||||||||||||||||| ||||| |||||  ||  ||
Sbjct: 5471 agaggtcgagcagctggcagttctcccagagcgtcttggcggagcggcggaggcggcggg 5412

                                                                        
Query: 234  cctcagcctcggtgaggtccatctcggcaacaccgaggatgccgccacggcctaggcggg 293
            ||||  |||||||||| ||||||||||| || ||||||| |||| | ||||| |||||||
Sbjct: 5411 cctcctcctcggtgagctccatctcggcgacgccgaggacgccggcgcggccgaggcggg 5352

                                                                        
Query: 294  caggcaggctgaggaacacctcgtggccgtctgagatgccatggaagcccgaggcaagga 353
            | || ||||||||||| ||||||||| | |  | |||||| |||||||| ||||| ||||
Sbjct: 5351 cggggaggctgaggaagacctcgtggtcttgggggatgccgtggaagccggaggcgagga 5292

                                                  
Query: 354  cagagacagggtgcacgcggcgctggtcgcggaggagg 391
            | ||||| ||||| | |||| |||||||||||||||||
Sbjct: 5291 cggagacggggtggatgcggtgctggtcgcggaggagg 5254



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>dbj|D13817.1|RICLDH Oryza sativa (japonica cultivar-group) mRNA for lactate
            dehydrogenase, complete cds
          Length = 1412

 Score =  178 bits (90), Expect = 9e-42
 Identities = 186/218 (85%)
 Strand = Plus / Minus

                                                                        
Query: 174  agaggtcgagaagctggcagttctcccagagcgtcttggcagagcgccggagctgggcgg 233
            |||||||||| ||||||||||||||||||||||||||||| ||||| |||||  ||  ||
Sbjct: 1170 agaggtcgagcagctggcagttctcccagagcgtcttggcggagcggcggaggcggcggg 1111

                                                                        
Query: 234  cctcagcctcggtgaggtccatctcggcaacaccgaggatgccgccacggcctaggcggg 293
            ||||  |||||||||| ||||||||||| || ||||||| |||| | ||||| |||||||
Sbjct: 1110 cctcctcctcggtgagctccatctcggcgacgccgaggacgccggcgcggccgaggcggg 1051

                                                                        
Query: 294  caggcaggctgaggaacacctcgtggccgtctgagatgccatggaagcccgaggcaagga 353
            | || ||||||||||| ||||||||| | |  | |||||| |||||||| ||||| ||||
Sbjct: 1050 cggggaggctgaggaagacctcgtggtcttgggggatgccgtggaagccggaggcgagga 991

                                                  
Query: 354  cagagacagggtgcacgcggcgctggtcgcggaggagg 391
            | ||||| ||||| | |||| |||||||||||||||||
Sbjct: 990  cggagacggggtggatgcggtgctggtcgcggaggagg 953



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>dbj|AK106891.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-G06, full
           insert sequence
          Length = 1601

 Score =  170 bits (86), Expect = 2e-39
 Identities = 185/218 (84%)
 Strand = Plus / Plus

                                                                       
Query: 174 agaggtcgagaagctggcagttctcccagagcgtcttggcagagcgccggagctgggcgg 233
           |||||||||| ||||||||||||||||||||||||||||| ||||| |||||  ||  ||
Sbjct: 20  agaggtcgagcagctggcagttctcccagagcgtcttggcggagcggcggaggcggcggg 79

                                                                       
Query: 234 cctcagcctcggtgaggtccatctcggcaacaccgaggatgccgccacggcctaggcggg 293
           ||||  |||||||||| ||||||||||| || ||||||| |||| | ||||| |||||||
Sbjct: 80  cctcctcctcggtgagctccatctcggcgacgccgaggacgccggcgcggccgaggcggg 139

                                                                       
Query: 294 caggcaggctgaggaacacctcgtggccgtctgagatgccatggaagcccgaggcaagga 353
           | || ||||||||||| ||||||||| | |  | |||||| |||||||| ||||| ||||
Sbjct: 140 cggggaggctgaggaagacctcgtggtcttgggggatgccgtggaagccggaggcgagga 199

                                                 
Query: 354 cagagacagggtgcacgcggcgctggtcgcggaggagg 391
             ||||| ||||| | |||| |||||||||||||||||
Sbjct: 200 tggagacggggtggatgcggtgctggtcgcggaggagg 237



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>gb|AY109690.1| Zea mays CL2158_1 mRNA sequence
          Length = 1496

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 75/90 (83%)
 Strand = Plus / Minus

                                                                        
Query: 172  tcagaggtcgagaagctggcagttctcccagagcgtcttggcagagcgccggagctgggc 231
            ||||||| |||| |||||||||||||||||||  |||||||| ||||| || ||  |   
Sbjct: 1135 tcagaggccgaggagctggcagttctcccagatggtcttggcggagcggcgcagtcgttt 1076

                                          
Query: 232  ggcctcagcctcggtgaggtccatctcggc 261
            ||||||  |||||||||| |||||||||||
Sbjct: 1075 ggcctcctcctcggtgagctccatctcggc 1046



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>emb|Z11754.1|ZMLACDEHG Z.mays gene for lactate dehydrogenase
          Length = 2999

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 172/216 (79%), Gaps = 3/216 (1%)
 Strand = Plus / Minus

                                                                        
Query: 172  tcagaggtcgagaagctggcagttctcccagagcgtcttggcagagcgccggagctgggc 231
            ||||||| |||| |||||||||||||||||||  |||||||| ||||| || ||  |   
Sbjct: 2525 tcagaggccgaggagctggcagttctcccagatggtcttggcggagcggcgcagtcgttt 2466

                                                                        
Query: 232  ggcctcagcctcggtgaggtccatctcggcaacaccgaggatgccgccacggcctaggcg 291
            ||||||  |||||||||| ||||||||| | || ||  ||| |||| | ||||| | | |
Sbjct: 2465 ggcctcctcctcggtgagctccatctcg-cgacgccctggacgccggcgcggccgacgtg 2407

                                                                        
Query: 292  ggcaggcaggctgaggaacacctcgtggccgtctgagatgccatggaagcccgaggcaag 351
            | | |||||||||||||| || ||||  ||||| | |||||| ||||| |||  ||| ||
Sbjct: 2406 g-cgggcaggctgaggaagacgtcgtt-ccgtcggggatgccgtggaaccccctggcgag 2349

                                                
Query: 352  gacagagacagggtgcacgcggcgctggtcgcggag 387
            ||| ||||| ||||| | |||||||||||| |||||
Sbjct: 2348 gacggagaccgggtggatgcggcgctggtcccggag 2313



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>gb|AC150573.4| Bos taurus  BAC CH240-238N22 (Children's Hospital Oakland Research
            Institute Bovine BAC Library (male)) complete sequence
          Length = 163445

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 132  tcatgattttacagcaagtagatcaa 157
            ||||||||| ||||||||||||||||
Sbjct: 5002 tcatgatttgacagcaagtagatcaa 5027



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>gb|AC146604.5| Mus musculus BAC clone RP23-306G1 from chromosome 13, complete sequence
          Length = 213725

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 121   ttgcaaatgcttcatgatttta 142
             ||||||||||||||||||||||
Sbjct: 88131 ttgcaaatgcttcatgatttta 88110



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>gb|AC134608.3| Mus musculus BAC clone RP23-68H13 from 13, complete sequence
          Length = 253539

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 121   ttgcaaatgcttcatgatttta 142
             ||||||||||||||||||||||
Sbjct: 26954 ttgcaaatgcttcatgatttta 26933



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>gb|AC107752.8| Mus musculus chromosome 10, clone RP23-244J13, complete sequence
          Length = 208458

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 88     gcaggaacagagcaacatata 108
              |||||||||||||||||||||
Sbjct: 125470 gcaggaacagagcaacatata 125490



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>gb|AC157991.5| Mus musculus chromosome 18, clone RP23-335B10, complete sequence
          Length = 198636

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 130    cttcatgattttacagcaagt 150
              |||||||||||||||||||||
Sbjct: 139350 cttcatgattttacagcaagt 139330



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>gb|AC102155.10| Mus musculus chromosome 18, clone RP23-334J12, complete sequence
          Length = 189666

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 130    cttcatgattttacagcaagt 150
              |||||||||||||||||||||
Sbjct: 159283 cttcatgattttacagcaagt 159303



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>emb|CR719969.2|CNS0GIH3 Tetraodon nigroviridis full-length cDNA
          Length = 1046

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 296 ggcaggctgaggaacacctcg 316
           |||||||||||||||||||||
Sbjct: 463 ggcaggctgaggaacacctcg 443



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>gb|AC011944.12| Homo sapiens chromosome 15, clone RP11-16K12, complete sequence
          Length = 166309

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 282   ggcctaggcgggcaggcaggc 302
             |||||||||||||||||||||
Sbjct: 22119 ggcctaggcgggcaggcaggc 22139



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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 364     gtgcacgcggcgctggtcgcg 384
               |||||||||||||||||||||
Sbjct: 2340330 gtgcacgcggcgctggtcgcg 2340310



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 368     acgcggcgctggtcgcggagg 388
               |||||||||||||||||||||
Sbjct: 3981830 acgcggcgctggtcgcggagg 3981850



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>gb|AC136956.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0038B22,
              complete sequence
          Length = 177557

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 125    aaatgcttcatgattttaca 144
              ||||||||||||||||||||
Sbjct: 163564 aaatgcttcatgattttaca 163545



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>gb|AC165174.2| Zea mays clone ZMMBBb-127F19, complete sequence
          Length = 187659

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 242    tcggtgaggtccatctcggc 261
              ||||||||||||||||||||
Sbjct: 129154 tcggtgaggtccatctcggc 129173



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>gb|AC139853.17| Medicago truncatula clone mth2-13d20, complete sequence
          Length = 93375

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 4     acaaatcgcattttatttcatgaaatta 31
             |||||| |||||||||||||| ||||||
Sbjct: 27130 acaaatagcattttatttcataaaatta 27103



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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 240     cctcggtgaggtccatctcg 259
               ||||||||||||||||||||
Sbjct: 2484511 cctcggtgaggtccatctcg 2484530



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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 229     ggcggcctcagcctcggtgaggtccatctcgg 260
               |||||||||||||||| | || ||||||||||
Sbjct: 2429741 ggcggcctcagcctcgatcagctccatctcgg 2429710



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>emb|AL035250.20|HS614C15 Human DNA sequence from clone RP4-614C15 on chromosome 20q13.2-13.33
             Contains the EDN3 gene for endothelin 3, ESTs, STSs, GSS
             and a CpG island, complete sequence
          Length = 105325

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 349   aaggacagagacagggtgca 368
             ||||||||||||||||||||
Sbjct: 12201 aaggacagagacagggtgca 12182



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>emb|BX901919.8| Zebrafish DNA sequence from clone DKEY-30I6 in linkage group 25, complete
              sequence
          Length = 233401

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 151    agatcaactggcgttcctcg 170
              ||||||||||||||||||||
Sbjct: 175409 agatcaactggcgttcctcg 175390



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>gb|AC174824.3| Cavia porcellus clone CH234-33F4, complete sequence
          Length = 176892

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 13     attttatttcatgaaattaa 32
              ||||||||||||||||||||
Sbjct: 159209 attttatttcatgaaattaa 159228



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>gb|AC007542.3| Homo sapiens 12p12 BAC RPCI11-320J20 (Roswell Park Cancer Institute Human
              BAC Library) complete sequence
          Length = 162081

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 344    gaggcaaggacagagacagg 363
              ||||||||||||||||||||
Sbjct: 101653 gaggcaaggacagagacagg 101672



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 125      aaatgcttcatgattttaca 144
                ||||||||||||||||||||
Sbjct: 19986497 aaatgcttcatgattttaca 19986478



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>emb|AL110479.1|CEY105C5B Caenorhabditis elegans YAC Y105C5B, complete sequence
          Length = 321304

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 13     attttatttcatgaaattaa 32
              ||||||||||||||||||||
Sbjct: 106818 attttatttcatgaaattaa 106837



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 125      aaatgcttcatgattttaca 144
                ||||||||||||||||||||
Sbjct: 20271476 aaatgcttcatgattttaca 20271457


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,504,763
Number of Sequences: 3902068
Number of extensions: 4504763
Number of successful extensions: 67774
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67449
Number of HSP's gapped (non-prelim): 311
length of query: 391
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 369
effective length of database: 17,147,199,772
effective search space: 6327316715868
effective search space used: 6327316715868
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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