ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart28h06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CPK15_ARATH (P92937) CBL-interacting serine/threonine-protein ki... 34 0.19
2ATX2L_MOUSE (Q7TQH0) Ataxin-2-like protein 32 0.93
3CIPK1_ORYSA (Q6X4A2) CIPK-like protein 1 (EC 2.7.11.1) (OsCK1) 31 1.6
4CCD16_BRARE (Q6P0I6) Coiled-coil domain-containing protein 16 30 2.1
5BISC_ECOLI (P20099) Biotin sulfoxide reductase (EC 1.-.-.-) (BDS... 30 2.7
6FABH2_STRAW (Q82M29) 3-oxoacyl-[acyl-carrier-protein] synthase 3... 29 4.6
7ATX2L_HUMAN (Q8WWM7) Ataxin-2-like protein (Ataxin-2 domain prot... 29 6.0
8MIB2_HUMAN (Q96AX9) Ubiquitin ligase protein MIB2 (EC 6.3.2.-) (... 28 7.9

>CPK15_ARATH (P92937) CBL-interacting serine/threonine-protein kinase 15 (EC|
           2.7.11.1) (Serine/threonine-protein kinase ATPK10)
           (SOS2-like protein kinase PKS3) (SOS-interacting protein
           2) (SNF1-related kinase 3.1)
          Length = 421

 Score = 33.9 bits (76), Expect = 0.19
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 444 EVAADVTVVEFAHDGGDALDFNKFCAEDVRPGLADIVWAW 325
           E+A    +V     GGD  ++ +   E +RP L D V AW
Sbjct: 381 EIAPSYHMVVLKKSGGDTAEYKRVMKESIRPALIDFVLAW 420



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>ATX2L_MOUSE (Q7TQH0) Ataxin-2-like protein|
          Length = 1049

 Score = 31.6 bits (70), Expect = 0.93
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 11/60 (18%)
 Frame = +2

Query: 254 AQRTPGGTA*DHATAPG-----------KAGTSPCHAHTMSASPGRTSSAQNLLKSSASP 400
           A+R+PGGT+  +   PG            A  SPC     +A  G    A+++L +SA P
Sbjct: 24  ARRSPGGTSPPNGGLPGPLTATAAPPGPPAAVSPCLGPAAAAGSGLRRGAESILAASAPP 83



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>CIPK1_ORYSA (Q6X4A2) CIPK-like protein 1 (EC 2.7.11.1) (OsCK1)|
          Length = 449

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -3

Query: 444 EVAADVTVVEFAHDGGDALDFNKFCAEDVRPGLADIVWAWQGDV 313
           +VA  + VVE     GD L+F KF    +   L D+VW   G+V
Sbjct: 400 QVAPSLHVVELKKAKGDTLEFQKF-YRTLSTQLKDVVWKCDGEV 442



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>CCD16_BRARE (Q6P0I6) Coiled-coil domain-containing protein 16|
          Length = 326

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
 Frame = +2

Query: 305 KAGTSPCH----AHTMSASPGRTSSAQNLLKSSASPP 403
           K+ T+P H    AHT + +P   SS+ + LK +A PP
Sbjct: 80  KSRTAPAHTPAPAHTPAHTPAAASSSSSTLKRAAEPP 116



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>BISC_ECOLI (P20099) Biotin sulfoxide reductase (EC 1.-.-.-) (BDS reductase)|
           (BSO reductase)
          Length = 777

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -3

Query: 342 DIVWAWQGDVPALPGAVA*SQAVPPGVLCAYKWRWSKLVILCRIIC 205
           D V  W      L GAV  S+ + PGV+C ++  W  L +    IC
Sbjct: 684 DTVRLWNARGQILAGAVI-SEGIKPGVICIHEGAWPDLDLTADGIC 728



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>FABH2_STRAW (Q82M29) 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 2 (EC|
           2.3.1.41) (3-oxoacyl-[acyl-carrier-protein] synthase III
           protein 2) (Beta-ketoacyl-ACP synthase III 2) (KAS III
           2)
          Length = 315

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
 Frame = -3

Query: 435 ADVTVVEFAHDGGDALDFNKFCAEDVRPGLADIVWAWQGDVPALPGAVA*SQAVPPGVL- 259
           +D T      DG  A   +  C E   PG+  ++W   G VP +  AV   +  PP    
Sbjct: 150 SDRTTCVLVGDGAGAAVVDA-CPEGAEPGIGPVLW---GSVPEMGHAVR-IEGTPPRFAQ 204

Query: 258 ---CAYKWRWSKLVILCRIIC 205
                Y+W  ++L  + R  C
Sbjct: 205 EGQSVYRWATTQLPAIARRAC 225



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>ATX2L_HUMAN (Q8WWM7) Ataxin-2-like protein (Ataxin-2 domain protein)|
           (Ataxin-2-related protein)
          Length = 1075

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 11/61 (18%)
 Frame = +2

Query: 254 AQRTPGGTA*DHATAPGKAGTS-----------PCHAHTMSASPGRTSSAQNLLKSSASP 400
           A+R PGGT+  +   PG   TS           PC     +A  G    A+ +L     P
Sbjct: 24  ARRPPGGTSPPNGGLPGPLATSAAPPGPPAAASPCLGPVAAAGSGLRRGAEGILAPQPPP 83

Query: 401 P 403
           P
Sbjct: 84  P 84



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>MIB2_HUMAN (Q96AX9) Ubiquitin ligase protein MIB2 (EC 6.3.2.-) (Mind bomb|
            homolog 2) (Zinc finger ZZ type with ankyrin repeat
            domain protein 1) (Skeletrophin) (Novelzin) (Novel zinc
            finger protein) (Putative NF-kappa-B-activating protein
            002N)
          Length = 1013

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 359  CALGSRTLCGRGRATCPPCRAPSRD 285
            C  G+   CG   + CP CR P RD
Sbjct: 983  CGHGACAPCGSALSACPICRQPIRD 1007


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,920,091
Number of Sequences: 219361
Number of extensions: 1122915
Number of successful extensions: 3068
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3066
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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