ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart28h04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_482926.1| Oryza sativa (japonica cultivar-group), mRNA 240 3e-60
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 240 3e-60
3dbj|AP004399.3| Oryza sativa (japonica cultivar-group) genomic D... 240 3e-60
4ref|XM_482927.1| Oryza sativa (japonica cultivar-group), mRNA 56 1e-04
5dbj|AK105839.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
6gb|CP000032.1| Silicibacter pomeroyi DSS-3 plasmid megaplasmid, ... 42 1.5
7gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 42 1.5
8dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
9dbj|AK111139.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
10gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
11emb|AL732535.4|CNS08C9A Oryza sativa chromosome 12, . BAC OSJNBa... 42 1.5
12ref|XM_482924.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.0
13ref|NM_009457.2| Mus musculus ubiquitin-activating enzyme E1, Ch... 40 6.0
14gb|AC128700.4| Mus musculus BAC clone RP24-130A20 from chromosom... 40 6.0
15gb|BC058630.1| Mus musculus ubiquitin-activating enzyme E1, Chr ... 40 6.0
16gb|AC135800.24| Medicago truncatula clone mth2-14g8, complete se... 40 6.0
17ref|NM_001014080.1| Rattus norvegicus similar to ubiquitin-prote... 40 6.0
18gb|AC119275.12| Mus musculus chromosome 8, clone RP24-459A4, com... 40 6.0
19gb|AF267127.1| Lactobacillus delbrueckii subsp. bulgaricus HflX ... 40 6.0
20gb|BC085791.1| Rattus norvegicus similar to ubiquitin-protein li... 40 6.0
21gb|AC157757.24| Medicago truncatula clone mth2-16j22, complete s... 40 6.0
22gb|AC093849.2| Homo sapiens BAC clone RP11-489G11 from 4, comple... 40 6.0
23dbj|AK143416.1| Mus musculus 2 days pregnant adult female ovary ... 40 6.0
24dbj|AK171667.1| Mus musculus activated spleen cDNA, RIKEN full-l... 40 6.0
25dbj|AK081808.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 40 6.0
26dbj|AK085107.1| Mus musculus 13 days embryo lung cDNA, RIKEN ful... 40 6.0
27dbj|AK088528.1| Mus musculus 2 days neonate thymus thymic cells ... 40 6.0
28dbj|AK088057.1| Mus musculus 2 days neonate thymus thymic cells ... 40 6.0
29dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
30dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 6.0
31gb|AC022236.4| Mus musculus strain C57BL6/J chromosome 5 clone R... 40 6.0
32gb|AC027653.3| Mus musculus strain C57BL6/J chromosome 5 clone R... 40 6.0
33gb|AC134587.3| Mus musculus BAC clone RP23-306P12 from chromosom... 40 6.0
34dbj|AK217817.1| Mus musculus cDNA, clone:Y2G0143B21, strand:minu... 40 6.0
35dbj|AK217264.1| Mus musculus cDNA, clone:Y2G0141D15, strand:plus... 40 6.0
36dbj|AK213246.1| Mus musculus cDNA, clone:Y2G0127L05, strand:minu... 40 6.0
37dbj|AK207789.1| Mus musculus cDNA, clone:Y2G0109C05, strand:minu... 40 6.0
38dbj|AK205285.1| Mus musculus cDNA, clone:Y2G0101D17, strand:minu... 40 6.0
39dbj|AK204546.1| Mus musculus cDNA, clone:Y1G0148M23, strand:minu... 40 6.0
40dbj|AK204473.1| Mus musculus cDNA, clone:Y1G0148I22, strand:minu... 40 6.0
41dbj|AK202271.1| Mus musculus cDNA, clone:Y1G0140O17, strand:minu... 40 6.0
42dbj|AK201099.1| Mus musculus cDNA, clone:Y1G0136P22, strand:plus... 40 6.0
43dbj|AK200836.1| Mus musculus cDNA, clone:Y1G0136C08, strand:minu... 40 6.0
44dbj|AK199948.1| Mus musculus cDNA, clone:Y1G0132N19, strand:minu... 40 6.0
45gb|DQ163912.1| Bacteriophage F10, complete genome 40 6.0
46dbj|AK195106.1| Mus musculus cDNA, clone:Y1G0117G14, strand:minu... 40 6.0
47dbj|AK194651.1| Mus musculus cDNA, clone:Y1G0116A15, strand:plus... 40 6.0
48dbj|AK191964.1| Mus musculus cDNA, clone:Y1G0107H13, strand:plus... 40 6.0
49dbj|AK181308.1| Mus musculus cDNA, clone:Y0G0117K13, strand:minu... 40 6.0
50dbj|AK178731.1| Mus musculus cDNA, clone:Y0G0107L15, strand:minu... 40 6.0
51dbj|AP006849.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
52dbj|AK120686.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
53dbj|AK109121.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
54dbj|AK105811.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
55dbj|AK068197.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
56dbj|AK063390.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
57emb|AL928748.4|CNS08CBL Oryza sativa chromosome 12, . BAC OSJNBb... 40 6.0
58emb|AL731882.2|CNS08C8M Oryza sativa chromosome 12, . BAC OSJNBb... 40 6.0
59emb|AL807240.12| Mouse DNA sequence from clone RP23-394F6 on chr... 40 6.0
60dbj|D10576.1|MUSUBA1 Mus musculus mRNA for ubiquitin activating ... 40 6.0 
>ref|XM_482926.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 990

 Score =  240 bits (121), Expect = 3e-60
 Identities = 220/253 (86%)
 Strand = Plus / Minus

                                                                       
Query: 161 ctcctccaggaaggaaacgtgcccctcgccgccggtctcgtacagcaccgcctcctcccc 220
           |||||| |||||| | ||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 903 ctcctcgaggaagtagacgtggccctcgccgccggtctcgtacagcgccgcctcctcccc 844

                                                                       
Query: 221 tgtccacgcgctccccctcagcgcctccacgtaccgccggcccctgtcccgcatcgtgtc 280
           |  ||||||||||||||||||| |||||||||||  |||  | | ||| |||||||||||
Sbjct: 843 ttcccacgcgctccccctcagcacctccacgtacatccgagctcggtcacgcatcgtgtc 784

                                                                       
Query: 281 cagctccgccacggtgaccagtgctcgccggcaaccgagcgccgcccactccaccgccgg 340
            |||||| |||||||||||||||| |||||||| || ||||||||||| ||| |||||||
Sbjct: 783 gagctcccccacggtgaccagtgcccgccggcagccaagcgccgcccattcctccgccgg 724

                                                                       
Query: 341 catcgccagagggttgatgaacgggtggtcggtaccgtacctccccgcgcagatgaagcc 400
             | | ||| ||||||||||||||||||||| | ||||||||||| ||||| ||||||||
Sbjct: 723 agtggacagcgggttgatgaacgggtggtcgatcccgtacctcccggcgcacatgaagcc 664

                        
Query: 401 ccacgacctctcc 413
           ||| || ||||||
Sbjct: 663 ccatgatctctcc 651
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  240 bits (121), Expect = 3e-60
 Identities = 220/253 (86%)
 Strand = Plus / Plus

                                                                            
Query: 161      ctcctccaggaaggaaacgtgcccctcgccgccggtctcgtacagcaccgcctcctcccc 220
                |||||| |||||| | ||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 23401477 ctcctcgaggaagtagacgtggccctcgccgccggtctcgtacagcgccgcctcctcccc 23401536

                                                                            
Query: 221      tgtccacgcgctccccctcagcgcctccacgtaccgccggcccctgtcccgcatcgtgtc 280
                |  ||||||||||||||||||| |||||||||||  |||  | | ||| |||||||||||
Sbjct: 23401537 ttcccacgcgctccccctcagcacctccacgtacatccgagctcggtcacgcatcgtgtc 23401596

                                                                            
Query: 281      cagctccgccacggtgaccagtgctcgccggcaaccgagcgccgcccactccaccgccgg 340
                 |||||| |||||||||||||||| |||||||| || ||||||||||| ||| |||||||
Sbjct: 23401597 gagctcccccacggtgaccagtgcccgccggcagccaagcgccgcccattcctccgccgg 23401656

                                                                            
Query: 341      catcgccagagggttgatgaacgggtggtcggtaccgtacctccccgcgcagatgaagcc 400
                  | | ||| ||||||||||||||||||||| | ||||||||||| ||||| ||||||||
Sbjct: 23401657 agtggacagcgggttgatgaacgggtggtcgatcccgtacctcccggcgcacatgaagcc 23401716

                             
Query: 401      ccacgacctctcc 413
                ||| || ||||||
Sbjct: 23401717 ccatgatctctcc 23401729



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Plus

                                                                            
Query: 334      ccgccggcatcgccagagggttgatgaacgggtggtcggtaccgtacctccccgcgcaga 393
                ||||||||| |||||  ||||| | | ||||||| ||  | |||||||||||||||||||
Sbjct: 23404831 ccgccggcagcgccatcgggttcacgtacgggtgctccatcccgtacctccccgcgcaga 23404890

                            
Query: 394      tgaagccccacg 405
                |||| |||||||
Sbjct: 23404891 tgaaaccccacg 23404902



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 195      gtctcgtacagcaccgcctc 214
                ||||||||||||||||||||
Sbjct: 23395938 gtctcgtacagcaccgcctc 23395957
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>dbj|AP004399.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0451G12
          Length = 142182

 Score =  240 bits (121), Expect = 3e-60
 Identities = 220/253 (86%)
 Strand = Plus / Plus

                                                                         
Query: 161   ctcctccaggaaggaaacgtgcccctcgccgccggtctcgtacagcaccgcctcctcccc 220
             |||||| |||||| | ||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 83314 ctcctcgaggaagtagacgtggccctcgccgccggtctcgtacagcgccgcctcctcccc 83373

                                                                         
Query: 221   tgtccacgcgctccccctcagcgcctccacgtaccgccggcccctgtcccgcatcgtgtc 280
             |  ||||||||||||||||||| |||||||||||  |||  | | ||| |||||||||||
Sbjct: 83374 ttcccacgcgctccccctcagcacctccacgtacatccgagctcggtcacgcatcgtgtc 83433

                                                                         
Query: 281   cagctccgccacggtgaccagtgctcgccggcaaccgagcgccgcccactccaccgccgg 340
              |||||| |||||||||||||||| |||||||| || ||||||||||| ||| |||||||
Sbjct: 83434 gagctcccccacggtgaccagtgcccgccggcagccaagcgccgcccattcctccgccgg 83493

                                                                         
Query: 341   catcgccagagggttgatgaacgggtggtcggtaccgtacctccccgcgcagatgaagcc 400
               | | ||| ||||||||||||||||||||| | ||||||||||| ||||| ||||||||
Sbjct: 83494 agtggacagcgggttgatgaacgggtggtcgatcccgtacctcccggcgcacatgaagcc 83553

                          
Query: 401   ccacgacctctcc 413
             ||| || ||||||
Sbjct: 83554 ccatgatctctcc 83566



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Plus

                                                                         
Query: 334   ccgccggcatcgccagagggttgatgaacgggtggtcggtaccgtacctccccgcgcaga 393
             ||||||||| |||||  ||||| | | ||||||| ||  | |||||||||||||||||||
Sbjct: 86668 ccgccggcagcgccatcgggttcacgtacgggtgctccatcccgtacctccccgcgcaga 86727

                         
Query: 394   tgaagccccacg 405
             |||| |||||||
Sbjct: 86728 tgaaaccccacg 86739



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 195   gtctcgtacagcaccgcctc 214
             ||||||||||||||||||||
Sbjct: 77775 gtctcgtacagcaccgcctc 77794
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>ref|XM_482927.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1228

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                       
Query: 334 ccgccggcatcgccagagggttgatgaacgggtggtcggtaccgtacctccccgcgcaga 393
           ||||||||| |||||  ||||| | | ||||||| ||  | |||||||||||||||||||
Sbjct: 828 ccgccggcagcgccatcgggttcacgtacgggtgctccatcccgtacctccccgcgcaga 769

                       
Query: 394 tgaagccccacg 405
           |||| |||||||
Sbjct: 768 tgaaaccccacg 757
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>dbj|AK105839.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-F05, full
           insert sequence
          Length = 1228

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                       
Query: 334 ccgccggcatcgccagagggttgatgaacgggtggtcggtaccgtacctccccgcgcaga 393
           ||||||||| |||||  ||||| | | ||||||| ||  | |||||||||||||||||||
Sbjct: 828 ccgccggcagcgccatcgggttcacgtacgggtgctccatcccgtacctccccgcgcaga 769

                       
Query: 394 tgaagccccacg 405
           |||| |||||||
Sbjct: 768 tgaaaccccacg 757
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>gb|CP000032.1| Silicibacter pomeroyi DSS-3 plasmid megaplasmid, complete sequence
          Length = 491611

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 180   tgcccctcgccgccggtctcg 200
             |||||||||||||||||||||
Sbjct: 43326 tgcccctcgccgccggtctcg 43306
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 340     gcatcgccagagggttgatgaacgg 364
               |||||||||||| ||||||||||||
Sbjct: 3181833 gcatcgccagagcgttgatgaacgg 3181857
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 319      gcgccgcccactccaccgccggcatcgcc 347
                ||||||||||||||| |||||||| ||||
Sbjct: 25269107 gcgccgcccactccagcgccggcaccgcc 25269079



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 318     agcgccgcccactccaccgccggc 341
               ||||||||||||||| ||||||||
Sbjct: 4070181 agcgccgcccactcctccgccggc 4070158
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>dbj|AK111139.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-176-D12, full
           insert sequence
          Length = 956

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 319 gcgccgcccactccaccgccggcatcgcc 347
           ||||||||||||||| |||||||| ||||
Sbjct: 638 gcgccgcccactccagcgccggcaccgcc 610
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 319      gcgccgcccactccaccgccggcatcgcc 347
                ||||||||||||||| |||||||| ||||
Sbjct: 25197283 gcgccgcccactccagcgccggcaccgcc 25197255



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 318     agcgccgcccactccaccgccggc 341
               ||||||||||||||| ||||||||
Sbjct: 4070168 agcgccgcccactcctccgccggc 4070145
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>emb|AL732535.4|CNS08C9A Oryza sativa chromosome 12, . BAC OSJNBa0035N13 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 158927

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 319   gcgccgcccactccaccgccggcatcgcc 347
             ||||||||||||||| |||||||| ||||
Sbjct: 68083 gcgccgcccactccagcgccggcaccgcc 68111
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>ref|XM_482924.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1071

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 195 gtctcgtacagcaccgcctc 214
           ||||||||||||||||||||
Sbjct: 941 gtctcgtacagcaccgcctc 922
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>ref|NM_009457.2| Mus musculus ubiquitin-activating enzyme E1, Chr X (Ube1x), mRNA
          Length = 3950

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 401  ccacgacctctccaccctct 420
            ||||||||||||||||||||
Sbjct: 1611 ccacgacctctccaccctct 1592
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>gb|AC128700.4| Mus musculus BAC clone RP24-130A20 from chromosome 8, complete sequence
          Length = 161757

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 43     tcagcagtgacagatcacagatgg 66
              |||||||||||||||| |||||||
Sbjct: 142622 tcagcagtgacagatcccagatgg 142599
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>gb|BC058630.1| Mus musculus ubiquitin-activating enzyme E1, Chr X, mRNA (cDNA clone
            MGC:73441 IMAGE:6402368), complete cds
          Length = 3562

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 401  ccacgacctctccaccctct 420
            ||||||||||||||||||||
Sbjct: 1675 ccacgacctctccaccctct 1656
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>gb|AC135800.24| Medicago truncatula clone mth2-14g8, complete sequence
          Length = 125467

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 87     ttccccacctagctccgcct 106
              ||||||||||||||||||||
Sbjct: 108903 ttccccacctagctccgcct 108922
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>ref|NM_001014080.1| Rattus norvegicus similar to ubiquitin-protein ligase (EC 6.3.2.19)
            E1 - mouse (LOC314432), mRNA
          Length = 3618

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 401  ccacgacctctccaccctct 420
            ||||||||||||||||||||
Sbjct: 1679 ccacgacctctccaccctct 1660
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>gb|AC119275.12| Mus musculus chromosome 8, clone RP24-459A4, complete sequence
          Length = 203937

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 43    tcagcagtgacagatcacagatgg 66
             |||||||||||||||| |||||||
Sbjct: 42006 tcagcagtgacagatcccagatgg 41983
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>gb|AF267127.1| Lactobacillus delbrueckii subsp. bulgaricus HflX (hflX) gene, partial
            cds; EPS gene cluster, complete sequence; and unknown
            genes
          Length = 18023

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 278  gtccagctccgccacggtga 297
            ||||||||||||||||||||
Sbjct: 1352 gtccagctccgccacggtga 1371
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>gb|BC085791.1| Rattus norvegicus similar to ubiquitin-protein ligase (EC 6.3.2.19)
            E1 - mouse, mRNA (cDNA clone MGC:93773 IMAGE:7109118),
            complete cds
          Length = 3618

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 401  ccacgacctctccaccctct 420
            ||||||||||||||||||||
Sbjct: 1679 ccacgacctctccaccctct 1660
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>gb|AC157757.24| Medicago truncatula clone mth2-16j22, complete sequence
          Length = 139728

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 87    ttccccacctagctccgcct 106
             ||||||||||||||||||||
Sbjct: 30740 ttccccacctagctccgcct 30721
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>gb|AC093849.2| Homo sapiens BAC clone RP11-489G11 from 4, complete sequence
          Length = 156195

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 43     tcagcagtgacagatcacagatgg 66
              |||||||||||||||| |||||||
Sbjct: 127870 tcagcagtgacagatcccagatgg 127847
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>dbj|AK143416.1| Mus musculus 2 days pregnant adult female ovary cDNA, RIKEN
            full-length enriched library, clone:E330031L11
            product:ubiquitin-activating enzyme E1, Chr X, full
            insert sequence
          Length = 3975

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 401  ccacgacctctccaccctct 420
            ||||||||||||||||||||
Sbjct: 1635 ccacgacctctccaccctct 1616
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>dbj|AK171667.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
            library, clone:F830003C01 product:ubiquitin-activating
            enzyme E1, Chr X, full insert sequence
          Length = 3563

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 401  ccacgacctctccaccctct 420
            ||||||||||||||||||||
Sbjct: 1700 ccacgacctctccaccctct 1681
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>dbj|AK081808.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
            library, clone:C130078L16 product:ubiquitin-activating
            enzyme E1, Chr X, full insert sequence
          Length = 3568

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 401  ccacgacctctccaccctct 420
            ||||||||||||||||||||
Sbjct: 1700 ccacgacctctccaccctct 1681
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>dbj|AK085107.1| Mus musculus 13 days embryo lung cDNA, RIKEN full-length enriched
            library, clone:D430037G06 product:cerebral cavernous
            malformations 1, full insert sequence
          Length = 4295

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 406  acctctccaccctctgcaggaacc 429
            ||||||||| ||||||||||||||
Sbjct: 2473 acctctccaacctctgcaggaacc 2450
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>dbj|AK088528.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
            full-length enriched library, clone:E430019K02
            product:ubiquitin-activating enzyme E1, Chr X, full
            insert sequence
          Length = 3950

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 401  ccacgacctctccaccctct 420
            ||||||||||||||||||||
Sbjct: 1611 ccacgacctctccaccctct 1592
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>dbj|AK088057.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
            full-length enriched library, clone:E430002O15
            product:ubiquitin-activating enzyme E1, Chr X, full
            insert sequence
          Length = 3950

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 401  ccacgacctctccaccctct 420
            ||||||||||||||||||||
Sbjct: 1611 ccacgacctctccaccctct 1592
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 168      aggaaggaaacgtgcccctcgccgccggtctcgtac 203
                |||||| | |||||| |||||||| |||||||||||
Sbjct: 17413718 aggaagtagacgtgcacctcgccggcggtctcgtac 17413683
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 145    tgtcgccccagccggactcc 164
              ||||||||||||||||||||
Sbjct: 292920 tgtcgccccagccggactcc 292939
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>gb|AC022236.4| Mus musculus strain C57BL6/J chromosome 5 clone RP23-425I8, complete
             sequence
          Length = 198392

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 406   acctctccaccctctgcaggaacc 429
             ||||||||| ||||||||||||||
Sbjct: 24664 acctctccaacctctgcaggaacc 24687
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>gb|AC027653.3| Mus musculus strain C57BL6/J chromosome 5 clone RP23-166J14, complete
              sequence
          Length = 174990

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 406    acctctccaccctctgcaggaacc 429
              ||||||||| ||||||||||||||
Sbjct: 135881 acctctccaacctctgcaggaacc 135904
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>gb|AC134587.3| Mus musculus BAC clone RP23-306P12 from chromosome 7, complete sequence
          Length = 166576

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 42    atcagcagtgacagatcaca 61
             ||||||||||||||||||||
Sbjct: 37214 atcagcagtgacagatcaca 37195
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>dbj|AK217817.1| Mus musculus cDNA, clone:Y2G0143B21, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000054850, based on BLAT search
          Length = 221

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 401 ccacgacctctccaccctct 420
           ||||||||||||||||||||
Sbjct: 166 ccacgacctctccaccctct 147
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>dbj|AK217264.1| Mus musculus cDNA, clone:Y2G0141D15, strand:plus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000054850, based on BLAT search
          Length = 221

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 401 ccacgacctctccaccctct 420
           ||||||||||||||||||||
Sbjct: 166 ccacgacctctccaccctct 147
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>dbj|AK213246.1| Mus musculus cDNA, clone:Y2G0127L05, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000054850, based on BLAT search
          Length = 221

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 401 ccacgacctctccaccctct 420
           ||||||||||||||||||||
Sbjct: 166 ccacgacctctccaccctct 147
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>dbj|AK207789.1| Mus musculus cDNA, clone:Y2G0109C05, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000054850, based on BLAT search
          Length = 221

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 401 ccacgacctctccaccctct 420
           ||||||||||||||||||||
Sbjct: 166 ccacgacctctccaccctct 147
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>dbj|AK205285.1| Mus musculus cDNA, clone:Y2G0101D17, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000054850, based on BLAT search
          Length = 177

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 401 ccacgacctctccaccctct 420
           ||||||||||||||||||||
Sbjct: 122 ccacgacctctccaccctct 103
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>dbj|AK204546.1| Mus musculus cDNA, clone:Y1G0148M23, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000054850, based on BLAT search
          Length = 221

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 401 ccacgacctctccaccctct 420
           ||||||||||||||||||||
Sbjct: 166 ccacgacctctccaccctct 147
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>dbj|AK204473.1| Mus musculus cDNA, clone:Y1G0148I22, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000054850, based on BLAT search
          Length = 221

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 401 ccacgacctctccaccctct 420
           ||||||||||||||||||||
Sbjct: 166 ccacgacctctccaccctct 147
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>dbj|AK202271.1| Mus musculus cDNA, clone:Y1G0140O17, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000054850, based on BLAT search
          Length = 221

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 401 ccacgacctctccaccctct 420
           ||||||||||||||||||||
Sbjct: 166 ccacgacctctccaccctct 147
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>dbj|AK201099.1| Mus musculus cDNA, clone:Y1G0136P22, strand:plus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000054850, based on BLAT search
          Length = 221

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 401 ccacgacctctccaccctct 420
           ||||||||||||||||||||
Sbjct: 166 ccacgacctctccaccctct 147
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>dbj|AK200836.1| Mus musculus cDNA, clone:Y1G0136C08, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000054850, based on BLAT search
          Length = 221

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 401 ccacgacctctccaccctct 420
           ||||||||||||||||||||
Sbjct: 166 ccacgacctctccaccctct 147
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>dbj|AK199948.1| Mus musculus cDNA, clone:Y1G0132N19, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000054850, based on BLAT search
          Length = 221

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 401 ccacgacctctccaccctct 420
           ||||||||||||||||||||
Sbjct: 166 ccacgacctctccaccctct 147
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>gb|DQ163912.1| Bacteriophage F10, complete genome
          Length = 39199

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 322 ccgcccactccaccgccggcatcg 345
           |||||||||||||||||| |||||
Sbjct: 686 ccgcccactccaccgccgtcatcg 663
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>dbj|AK195106.1| Mus musculus cDNA, clone:Y1G0117G14, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000054850, based on BLAT search
          Length = 221

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 401 ccacgacctctccaccctct 420
           ||||||||||||||||||||
Sbjct: 166 ccacgacctctccaccctct 147
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>dbj|AK194651.1| Mus musculus cDNA, clone:Y1G0116A15, strand:plus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000054850, based on BLAT search
          Length = 221

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 401 ccacgacctctccaccctct 420
           ||||||||||||||||||||
Sbjct: 166 ccacgacctctccaccctct 147
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>dbj|AK191964.1| Mus musculus cDNA, clone:Y1G0107H13, strand:plus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000054850, based on BLAT search
          Length = 221

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 401 ccacgacctctccaccctct 420
           ||||||||||||||||||||
Sbjct: 166 ccacgacctctccaccctct 147
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>dbj|AK181308.1| Mus musculus cDNA, clone:Y0G0117K13, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000054850, based on BLAT search
          Length = 221

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 401 ccacgacctctccaccctct 420
           ||||||||||||||||||||
Sbjct: 166 ccacgacctctccaccctct 147
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>dbj|AK178731.1| Mus musculus cDNA, clone:Y0G0107L15, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000054850, based on BLAT search
          Length = 221

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 401 ccacgacctctccaccctct 420
           ||||||||||||||||||||
Sbjct: 166 ccacgacctctccaccctct 147
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>dbj|AP006849.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0054F02
          Length = 180651

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                  
Query: 168    aggaaggaaacgtgcccctcgccgccggtctcgtac 203
              |||||| | |||||| |||||||| |||||||||||
Sbjct: 137631 aggaagtagacgtgcacctcgccggcggtctcgtac 137596
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>dbj|AK120686.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013168D07, full
            insert sequence
          Length = 2304

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 168  aggaaggaaacgtgcccctcgccgccggtctcgtac 203
            |||||| | |||||| |||||||| |||||||||||
Sbjct: 1247 aggaagtagacgtgcacctcgccggcggtctcgtac 1212
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>dbj|AK109121.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-155-C12, full
           insert sequence
          Length = 1204

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 256 gccggcccctgtcccgcatc 275
           ||||||||||||||||||||
Sbjct: 688 gccggcccctgtcccgcatc 707
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>dbj|AK105811.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-C02, full
            insert sequence
          Length = 1522

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 168  aggaaggaaacgtgcccctcgccgccggtctcgtac 203
            |||||| | |||||| |||||||| |||||||||||
Sbjct: 1251 aggaagtagacgtgcacctcgccggcggtctcgtac 1216
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>dbj|AK068197.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013140N02, full
            insert sequence
          Length = 4012

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 168  aggaaggaaacgtgcccctcgccgccggtctcgtac 203
            |||||| | |||||| |||||||| |||||||||||
Sbjct: 3569 aggaagtagacgtgcacctcgccggcggtctcgtac 3534
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>dbj|AK063390.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-H01, full
           insert sequence
          Length = 1576

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 168 aggaaggaaacgtgcccctcgccgccggtctcgtac 203
           |||||| | |||||| |||||||| |||||||||||
Sbjct: 120 aggaagtagacgtgcacctcgccggcggtctcgtac 155
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>emb|AL928748.4|CNS08CBL Oryza sativa chromosome 12, . BAC OSJNBb0092O07 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 123469

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 318   agcgccgcccactccaccgccggc 341
             ||||||||||||||| ||||||||
Sbjct: 12577 agcgccgcccactcctccgccggc 12554
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>emb|AL731882.2|CNS08C8M Oryza sativa chromosome 12, . BAC OSJNBb0028H07 of library OSJNBb from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 132682

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 318    agcgccgcccactccaccgccggc 341
              ||||||||||||||| ||||||||
Sbjct: 106602 agcgccgcccactcctccgccggc 106579
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>emb|AL807240.12| Mouse DNA sequence from clone RP23-394F6 on chromosome X, complete
             sequence
          Length = 115145

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 401   ccacgacctctccaccctct 420
             ||||||||||||||||||||
Sbjct: 26849 ccacgacctctccaccctct 26830
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>dbj|D10576.1|MUSUBA1 Mus musculus mRNA for ubiquitin activating enzyme E1, complete cds
          Length = 3458

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 401  ccacgacctctccaccctct 420
            ||||||||||||||||||||
Sbjct: 1595 ccacgacctctccaccctct 1576


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,826,820
Number of Sequences: 3902068
Number of extensions: 2826820
Number of successful extensions: 60012
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59546
Number of HSP's gapped (non-prelim): 463
length of query: 445
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 423
effective length of database: 17,147,199,772
effective search space: 7253265503556
effective search space used: 7253265503556
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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