>MRAW_BDEBA (P62469) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)|
          Length = 328

 Score = 31.6 bits (70), Expect = 0.51
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 323 VERSDEFIPGSCILPFSSSPRYYQY*LQTVREGYNP 216
           +ER +E IP    LPF  SP +Y   LQ V   + P
Sbjct: 12  IERQEEVIPPKVELPFEFSPEHYPVLLQEVLAAFYP 47

>ZBED4_HUMAN (O75132) Zinc finger BED domain-containing protein 4|
          Length = 1171

 Score = 31.2 bits (69), Expect = 0.66
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -3

Query: 331 FWRWKEVMNSSQGRVFYHFRVPP-GTISTDCRLCGKGITPTWKGGI 197
           F + K+VM   +  V++HF + P  ++  +CR CG  I+   KG +
Sbjct: 447 FQQNKKVMKRLKSEVWHHFSLAPMDSLKAECRYCGCAISRGKKGDV 492

>MAMA_ECO57 (P58620) Methylaspartate mutase S chain (EC 5.4.99.1) (Glutamate|
           mutase sigma subunit)
          Length = 149

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 117 GGHLGVGTHDFITSRSTFKSRGNENLYIP 203
           GG+L VG HDF    + FK  G + ++ P
Sbjct: 91  GGNLVVGKHDFADVETKFKEMGFDRVFAP 119

>MUC1_HUMAN (P15941) Mucin-1 precursor (MUC-1) (Polymorphic epithelial mucin)|
            (PEM) (PEMT) (Episialin) (Tumor-associated mucin)
            (Carcinoma-associated mucin) (Tumor-associated epithelial
            membrane antigen) (EMA) (H23AG) (Peanut-reactive urinary
            mucin) (PUM)
          Length = 1255

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +3

Query: 132  VGTHDFITSRSTFKSRGNE--NLYIPPFQVGVIPFPHSLQSVLIVPG 266
            +  HD  T  + +K+      NL I    V  +PFP S QS   VPG
Sbjct: 1112 INVHDVETQFNQYKTEAASRYNLTISDVSVSDVPFPFSAQSGAGVPG 1158

>CAD12_HUMAN (P55289) Brain-cadherin precursor (BR-cadherin) (Cadherin-12)|
           (N-cadherin 2) (Cadherin, neural type, 2)
          Length = 794

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 209 PGGGYTLPAQSAISTDSTWGNSKMVKYTTLG*IHHFFPPPET 334
           P G Y L  ++  + D T+GNS  V Y+ L    +F   P+T
Sbjct: 174 PVGAYVLQVKATDADDPTYGNSARVVYSILQGQPYFSIDPKT 215

>CAD22_RAT (Q63315) Cadherin-22 precursor (Pituitary and brain cadherin)|
           (PB-cadherin)
          Length = 813

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 209 PGGGYTLPAQSAISTDSTWGNSKMVKYTTLG*IHHFFPPPET 334
           P G   +   ++ + D T+G+S  + Y+ L   HHF   P+T
Sbjct: 179 PTGTSVMQVMASDADDPTYGSSARLVYSVLDGEHHFTVDPKT 220

>CAD22_HUMAN (Q9UJ99) Cadherin-22 precursor (Pituitary and brain cadherin)|
           (PB-cadherin)
          Length = 828

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 209 PGGGYTLPAQSAISTDSTWGNSKMVKYTTLG*IHHFFPPPET 334
           P G   +   ++ + D T+G+S  + Y+ L   HHF   P+T
Sbjct: 182 PTGTSVMQVMASDADDPTYGSSARLVYSVLDGEHHFTVDPKT 223

>CMAH_PONPY (Q8MJC6) Cytidine monophosphate-N-acetylneuraminic acid hydroxylase|
           (EC 1.14.18.2) (CMP-N-acetylneuraminate monooxygenase)
           (CMP-N-acetylneuraminic acid hydroxylase) (CMP-NeuAc
           hydroxylase) (CMP-Neu5Ac hydroxylase) (Fragment)
          Length = 585

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 15/87 (17%)
 Frame = +1

Query: 31  ITSHPNYDKLIQSQVTTSSFPIEGSNIVQ------------GDTWELAHMT---S*HRGV 165
           + SHP+ DK I+ +  T + P E +N+++            G T +LA M    +  +G+
Sbjct: 358 VESHPS-DKYIK-ETNTKNDPNELNNLIKKNSDVITWTPRPGATLDLARMLKDPTDSKGI 415

Query: 166 LSKAEGTKIYIFLPSRWGLYPSRTVCN 246
           +   EGTKIY      W   P   + N
Sbjct: 416 VEPPEGTKIY---KDSWDFEPYLEILN 439

>PRKDC_CANFA (Q8WN22) DNA-dependent protein kinase catalytic subunit (EC 2.7.11.1)|
            (DNA-PK catalytic subunit) (DNA-PKcs)
          Length = 4144

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 235  CGKGITPTWKGGIYKFSFPLLLKVLLDV 152
            CG+G  P ++  +YK +FP LL++  DV
Sbjct: 961  CGQGFPPMYQ--LYKRTFPALLRLACDV 986

>CAD22_MOUSE (Q9WTP5) Cadherin-22 precursor (Pituitary and brain cadherin)|
           (PB-cadherin)
          Length = 813

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 209 PGGGYTLPAQSAISTDSTWGNSKMVKYTTLG*IHHFFPPPET 334
           P G   +   ++ + D T+G S  + Y+ L   HHF   P+T
Sbjct: 179 PTGTSVMQVMASDADDPTYGRSARLVYSVLDGEHHFTVDPKT 220

>MQO2_PSEPK (Q88NF9) Probable malate:quinone oxidoreductase 2 (EC 1.1.99.16)|
           (Malate dehydrogenase [acceptor] 2) (MQO 2)
          Length = 527

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 128 GSWHT*LHNIEEYFQKQRERKFIYSSLPGGGYTLPAQSAI 247
           GSWH    N+++  +   + KF++    GG   L  +S I
Sbjct: 221 GSWHVEYKNLKDGTESATDAKFLFIGAGGGALKLLQKSGI 260

>MCSP_RAT (Q64298) Sperm mitochondrial-associated cysteine-rich protein|
          Length = 145

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 142 CVPTPKCPPERCLSP 98
           C PTP CPP+ C  P
Sbjct: 10  CCPTPCCPPKPCCPP 24

>SAS_DROME (Q04164) Putative epidermal cell surface receptor precursor (Stranded|
            at second protein)
          Length = 1693

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 199  IYKFSFPLLLKVLLDVMKSCVPTPKCPPERCLSP 98
            +YK    L+L+ L     S + T K PPER ++P
Sbjct: 1357 LYKVKITLILRDLNSQPTSSIYTVKTPPERTITP 1390

>HPS6_RAT (Q7M733) Hermansky-Pudlak syndrome 6 protein homolog (Ruby-eye|
           protein homolog) (Ruby-eye-like protein) (Ru)
          Length = 809

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +1

Query: 43  PNYDKLIQSQVTTSSFPIEGSNIVQGDTWELAHMTS*HRGVLSKAEGTKIYIFLPSRWGL 222
           P+  K+I +  +      +  N  QGDTW+   +     G LS  E   ++ + PS  GL
Sbjct: 221 PSKGKVIVAAPSLGLSHSKSLNPKQGDTWDFRTLLRGLPGFLSPREPLAVHTWAPSSQGL 280

>HPS6_MOUSE (Q8BLY7) Hermansky-Pudlak syndrome 6 protein homolog (Ruby-eye|
           protein) (Ru)
          Length = 805

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +1

Query: 43  PNYDKLIQSQVTTSSFPIEGSNIVQGDTWELAHMTS*HRGVLSKAEGTKIYIFLPSRWGL 222
           P+  K+I +  +      +  N  QGDTW+   +     G LS  E   ++ + PS  GL
Sbjct: 221 PSKGKVIVAAPSLGLSHSKSLNPKQGDTWDFRTLLRGLPGFLSPREPLAVHTWAPSSQGL 280

>CFI_CALCH (Q42663) Chalcone--flavonone isomerase (EC 5.5.1.6) (Chalcone|
           isomerase) (Fragment)
          Length = 237

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = -2

Query: 332 FLEVERSDEFIPGSCILPFSSSP 264
           FLEV + + F+PGS IL F++SP
Sbjct: 137 FLEVFKDENFLPGSSIL-FTTSP 158

>PSKR_ARATH (Q9ZVR7) Putative phytosulfokine receptor precursor (EC 2.7.11.1)|
            (Phytosulfokine LRR receptor kinase)
          Length = 1008

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -3

Query: 232  GKGITPTWKGGIYKFSFPLLLKVLLDVMKSCVPTPKCPPERCLSPLS 92
            G+    T+KG +Y F       VLL+++    P   C P+ C   +S
Sbjct: 908  GQASVATYKGDVYSFGV-----VLLELLTDKRPVDMCKPKGCRDLIS 949

>TRM1_ARATH (Q9LFU5) Probable N(2),N(2)-dimethylguanosine tRNA|
           methyltransferase (EC 2.1.1.32)
           (tRNA(guanine-26,N(2)-N(2)) methyltransferase) (tRNA
           2,2-dimethylguanosine-26 methyltransferase)
           (tRNA(m(2,2)G26)dimethyltransferase)
          Length = 586

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
 Frame = +1

Query: 154 HRGVLSKAEGTKIYIFLPS---RWG--LYPSRTVCNQY**YLG-ELENGKIHD 294
           H G LSKA+  K+  FLP+    WG  +   RT+ +++   LG E  NG +++
Sbjct: 493 HVGSLSKAQAKKVARFLPNPEKHWGPKIRAGRTITSKHVSLLGHEAVNGHLNN 545

>HELS_SULSO (Q97VY9) Putative ski2-type helicase (EC 3.6.1.-)|
          Length = 708

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 155 IEEYFQKQRERKFIYSSLPGGGYTLPAQSAISTDSTWGNSKMVKY 289
           IEE F+K++ +  + +     G  LPA++ I  D    N K+V Y
Sbjct: 323 IEESFRKRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNRKIVGY 367


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,254,462
Number of Sequences: 219361
Number of extensions: 1298355
Number of successful extensions: 3697
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3691
length of database: 80,573,946
effective HSP length: 91
effective length of database: 60,612,095
effective search space used: 1454690280
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)