ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart28g09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PIP26_ORYSA (Q7XLR1) Probable aquaporin PIP2.6 (Plasma membrane ... 45 8e-05
2PIP1_ATRCA (P42767) Aquaporin PIP-type 45 1e-04
3PIP27_ARATH (P93004) Aquaporin PIP2.7 (Plasma membrane intrinsic... 44 2e-04
4PIP28_ARATH (Q9ZVX8) Probable aquaporin PIP2.8 (Plasma membrane ... 43 4e-04
5PIP24_ARATH (Q9FF53) Probable aquaporin PIP2.4 (Plasma membrane ... 39 0.004
6PIP21_ORYSA (Q8H5N9) Probable aquaporin PIP2.1 (Plasma membrane ... 37 0.017
7PIP25_ARATH (Q9SV31) Probable aquaporin PIP2.5 (Plasma membrane ... 35 0.063
8PIP22_ORYSA (Q6K215) Probable aquaporin PIP2.2 (Plasma membrane ... 32 0.54
9PIP23_ORYSA (Q7XUA6) Probable aquaporin PIP2.3 (Plasma membrane ... 32 0.54
10PIP26_ARATH (Q9ZV07) Probable aquaporin PIP2.6 (Plasma membrane ... 32 0.54
11SMYD4_PONPY (Q5R5X9) SET and MYND domain-containing protein 4 32 0.91
12SMYD4_HUMAN (Q8IYR2) SET and MYND domain-containing protein 4 32 0.91
13SMYD4_CHICK (Q5F3V0) SET and MYND domain-containing protein 4 31 1.2
14PIP23_ARATH (P30302) Aquaporin PIP2.3 (Plasma membrane intrinsic... 31 1.6
15PIP22_ARATH (P43287) Aquaporin PIP2.2 (Plasma membrane intrinsic... 31 1.6
16PIP21_ARATH (P43286) Aquaporin PIP2.1 (Plasma membrane intrinsic... 31 1.6
17PIP28_ORYSA (Q7Y1E6) Probable aquaporin PIP2.8 (Plasma membrane ... 30 2.7
18UBR1_CAEEL (P91133) Ubiquitin-protein ligase E3 component N-reco... 30 2.7
19SMYD4_MOUSE (Q8BTK5) SET and MYND domain-containing protein 4 29 4.5
20ABLM1_HUMAN (O14639) Actin-binding LIM protein 1 (Actin-binding ... 29 4.5
21CATA_BACST (P14412) Peroxidase/catalase (EC 1.11.1.6) (Catalase-... 29 5.9
22PIP27_ORYSA (Q651D5) Probable aquaporin PIP2.7 (Plasma membrane ... 29 5.9
23YRM4_CAEEL (Q09415) Hypothetical protein R06F6.4 in chromosome II 28 7.7
24TELT_MOUSE (O70548) Telethonin (Titin cap protein) 28 7.7

>PIP26_ORYSA (Q7XLR1) Probable aquaporin PIP2.6 (Plasma membrane intrinsic|
           protein 2.6) (OsPIP2.6)
          Length = 282

 Score = 45.1 bits (105), Expect = 8e-05
 Identities = 22/22 (100%), Positives = 22/22 (100%)
 Frame = -3

Query: 439 GALAAAAYHQYILRAAAIKALG 374
           GALAAAAYHQYILRAAAIKALG
Sbjct: 253 GALAAAAYHQYILRAAAIKALG 274



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>PIP1_ATRCA (P42767) Aquaporin PIP-type|
          Length = 282

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 21/22 (95%), Positives = 22/22 (100%)
 Frame = -3

Query: 439 GALAAAAYHQYILRAAAIKALG 374
           GALAAAAYHQY+LRAAAIKALG
Sbjct: 253 GALAAAAYHQYVLRAAAIKALG 274



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>PIP27_ARATH (P93004) Aquaporin PIP2.7 (Plasma membrane intrinsic protein 3)|
           (Salt stress-induced major intrinsic protein)
          Length = 280

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 21/22 (95%), Positives = 22/22 (100%)
 Frame = -3

Query: 439 GALAAAAYHQYILRAAAIKALG 374
           GALAAAAYHQYILRA+AIKALG
Sbjct: 251 GALAAAAYHQYILRASAIKALG 272



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>PIP28_ARATH (Q9ZVX8) Probable aquaporin PIP2.8 (Plasma membrane intrinsic|
           protein 3b) (PIP3b)
          Length = 278

 Score = 42.7 bits (99), Expect = 4e-04
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = -3

Query: 439 GALAAAAYHQYILRAAAIKAL 377
           GALAAAAYHQYILRAAAIKAL
Sbjct: 249 GALAAAAYHQYILRAAAIKAL 269



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>PIP24_ARATH (Q9FF53) Probable aquaporin PIP2.4 (Plasma membrane intrinsic|
           protein 2.4)
          Length = 291

 Score = 39.3 bits (90), Expect = 0.004
 Identities = 19/22 (86%), Positives = 20/22 (90%)
 Frame = -3

Query: 439 GALAAAAYHQYILRAAAIKALG 374
           GA AAA YHQ+ILRAAAIKALG
Sbjct: 258 GAAAAAFYHQFILRAAAIKALG 279



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>PIP21_ORYSA (Q8H5N9) Probable aquaporin PIP2.1 (Plasma membrane intrinsic|
           protein 2a) (PIP2a) (OsPIP2.1)
          Length = 290

 Score = 37.4 bits (85), Expect = 0.017
 Identities = 18/22 (81%), Positives = 18/22 (81%)
 Frame = -3

Query: 439 GALAAAAYHQYILRAAAIKALG 374
           GA  AA YHQYILRA AIKALG
Sbjct: 263 GAAIAAFYHQYILRAGAIKALG 284



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>PIP25_ARATH (Q9SV31) Probable aquaporin PIP2.5 (Plasma membrane intrinsic|
           protein 2d) (PIP2d)
          Length = 286

 Score = 35.4 bits (80), Expect = 0.063
 Identities = 16/22 (72%), Positives = 18/22 (81%)
 Frame = -3

Query: 439 GALAAAAYHQYILRAAAIKALG 374
           GA  AA YHQ++LRA AIKALG
Sbjct: 257 GAAIAAFYHQFVLRAGAIKALG 278



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>PIP22_ORYSA (Q6K215) Probable aquaporin PIP2.2 (Plasma membrane intrinsic|
           protein 2.2) (OsPIP2.2)
          Length = 288

 Score = 32.3 bits (72), Expect = 0.54
 Identities = 14/19 (73%), Positives = 16/19 (84%)
 Frame = -3

Query: 439 GALAAAAYHQYILRAAAIK 383
           GA  AAAYHQY+LRA+A K
Sbjct: 262 GAAIAAAYHQYVLRASAAK 280



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>PIP23_ORYSA (Q7XUA6) Probable aquaporin PIP2.3 (Plasma membrane intrinsic|
           protein 2.3) (OsPIP2.3)
          Length = 290

 Score = 32.3 bits (72), Expect = 0.54
 Identities = 14/19 (73%), Positives = 16/19 (84%)
 Frame = -3

Query: 439 GALAAAAYHQYILRAAAIK 383
           GA  AAAYHQY+LRA+A K
Sbjct: 263 GAAIAAAYHQYVLRASAAK 281



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>PIP26_ARATH (Q9ZV07) Probable aquaporin PIP2.6 (Plasma membrane intrinsic|
           protein 2e) (PIP2e)
          Length = 289

 Score = 32.3 bits (72), Expect = 0.54
 Identities = 14/22 (63%), Positives = 17/22 (77%)
 Frame = -3

Query: 439 GALAAAAYHQYILRAAAIKALG 374
           GA  AA YHQ++LRA A+KA G
Sbjct: 257 GAAIAAFYHQFVLRAGAMKAYG 278



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>SMYD4_PONPY (Q5R5X9) SET and MYND domain-containing protein 4|
          Length = 804

 Score = 31.6 bits (70), Expect = 0.91
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 310 YCHRCIKSLAGVLSCSGCS 366
           YCHRC+K     + C GCS
Sbjct: 295 YCHRCLKHTLATVPCDGCS 313



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>SMYD4_HUMAN (Q8IYR2) SET and MYND domain-containing protein 4|
          Length = 804

 Score = 31.6 bits (70), Expect = 0.91
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 310 YCHRCIKSLAGVLSCSGCS 366
           YCHRC+K     + C GCS
Sbjct: 295 YCHRCLKHTLATVPCDGCS 313



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>SMYD4_CHICK (Q5F3V0) SET and MYND domain-containing protein 4|
          Length = 742

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 310 YCHRCIKSLAGVLSCSGCS 366
           YCH C+K L   + C GCS
Sbjct: 294 YCHHCLKQLLASIPCCGCS 312



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>PIP23_ARATH (P30302) Aquaporin PIP2.3 (Plasma membrane intrinsic protein 2c)|
           (PIP2c) (TMP2C) (RD28-PIP) (Water stress-induced
           tonoplast intrinsic protein) (WSI-TIP)
          Length = 285

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = -3

Query: 439 GALAAAAYHQYILRAAAIKALG 374
           GA  AA YHQ++LRA+  K+LG
Sbjct: 256 GATIAAFYHQFVLRASGSKSLG 277



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>PIP22_ARATH (P43287) Aquaporin PIP2.2 (Plasma membrane intrinsic protein 2b)|
           (PIP2b) (TMP2b)
          Length = 285

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = -3

Query: 439 GALAAAAYHQYILRAAAIKALG 374
           GA  AA YHQ++LRA+  K+LG
Sbjct: 256 GAAIAAFYHQFVLRASGSKSLG 277



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>PIP21_ARATH (P43286) Aquaporin PIP2.1 (Plasma membrane intrinsic protein 2a)|
           (PIP2a)
          Length = 287

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = -3

Query: 439 GALAAAAYHQYILRAAAIKALG 374
           GA  AA YHQ++LRA+  K+LG
Sbjct: 258 GAAIAAFYHQFVLRASGSKSLG 279



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>PIP28_ORYSA (Q7Y1E6) Probable aquaporin PIP2.8 (Plasma membrane intrinsic|
           protein 2.8) (OsPIP2.8)
          Length = 280

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 14/20 (70%), Positives = 14/20 (70%)
 Frame = -3

Query: 439 GALAAAAYHQYILRAAAIKA 380
           GA AA  YH YILR AA KA
Sbjct: 250 GAAAAMIYHHYILRGAAAKA 269



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>UBR1_CAEEL (P91133) Ubiquitin-protein ligase E3 component N-recognin (EC|
            6.-.-.-) (Ubiquitin-protein ligase E3-alpha)
          Length = 1927

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -2

Query: 368  PEQPEQLSTPANDLMQRWQYCSSCPSGAS*PHKRTGFVLAVLLLHRAHP 222
            P +P+   TP + L+      S  P+ A  PH  T F   V L + A P
Sbjct: 1560 PPRPKLAQTPGSPLLSAPSTSSFTPAPAQIPHSGTNFAFLVQLFNPAGP 1608



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>SMYD4_MOUSE (Q8BTK5) SET and MYND domain-containing protein 4|
          Length = 799

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 310 YCHRCIKSLAGVLSCSGCS 366
           YCHRC+K     + C  CS
Sbjct: 295 YCHRCLKHTLATVPCGSCS 313



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>ABLM1_HUMAN (O14639) Actin-binding LIM protein 1 (Actin-binding LIM protein|
           family member 1) (abLIM-1) (Actin-binding
           double-zinc-finger protein) (LIMAB1) (Limatin)
          Length = 778

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 305 SSTATVALNHWPA-CSVAPAAPEGAERLDGRRPEDVLVVRRRR 430
           S T  +  +HWP   S A   P+   R  GR  +D  ++RRR+
Sbjct: 559 SETPKIETDHWPGPPSFAVVGPDMKRRSSGREEDDEELLRRRQ 601



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>CATA_BACST (P14412) Peroxidase/catalase (EC 1.11.1.6) (Catalase-peroxidase)|
          Length = 735

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 170 WWPLSLSLTCMHRH*TRPDGHD 235
           WWP  L+L+ +H+H  + + HD
Sbjct: 31  WWPNQLNLSILHQHDRKTNPHD 52



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>PIP27_ORYSA (Q651D5) Probable aquaporin PIP2.7 (Plasma membrane intrinsic|
           protein 2.7) (OsPIP2.7)
          Length = 290

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = -3

Query: 439 GALAAAAYHQYILRAAAIKAL 377
           GA  AAAYH+ +LR  A KAL
Sbjct: 260 GAFLAAAYHKLVLRGEAAKAL 280



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>YRM4_CAEEL (Q09415) Hypothetical protein R06F6.4 in chromosome II|
          Length = 429

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 304 EQYCHRCIKSLAGVLSCSGC 363
           E YC++C+ S+A +  CS C
Sbjct: 23  ESYCNQCLTSMAELKKCSAC 42



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>TELT_MOUSE (O70548) Telethonin (Titin cap protein)|
          Length = 167

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +1

Query: 205 QTLNEAGWARWRSSTANTKPVRLCG*LAPDGHEEQYCHR 321
           Q   EA WA W+  T +T+P   C     D    +  HR
Sbjct: 15  QERREAFWAEWKDLTLSTRPEEGCSLHEEDTQRHETYHR 53


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,774,391
Number of Sequences: 219361
Number of extensions: 1036968
Number of successful extensions: 2708
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 2630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2707
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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