Clone Name | rbart28g08 |
---|---|
Clone Library Name | barley_pub |
>MYO1_SCHPO (Q9Y7Z8) Myosin-1| Length = 1217 Score = 33.5 bits (75), Expect = 0.28 Identities = 26/77 (33%), Positives = 35/77 (45%) Frame = +2 Query: 233 RTA*TKPKSNPSATLLPAHVLASVCTGERTAARAPVTAMYSTTCHFFPFASLHALPNAAA 412 + A TKP S P+A PA + V T ++T R P AM A PN Sbjct: 993 KPAATKPVSMPAAKSKPAPMANPVSTAQQTQNRPPAPAM-------------QARPNTTQ 1039 Query: 413 PWQPGSATATTTLKEQT 463 P ++T TTT+K+ T Sbjct: 1040 AAAPVTST-TTTIKQAT 1055
>MRC2_HUMAN (Q9UBG0) Macrophage mannose receptor 2 precursor (Urokinase| receptor-associated protein) (Endocytic receptor 180) (CD280 antigen) Length = 1479 Score = 30.4 bits (67), Expect = 2.3 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Frame = -1 Query: 237 VLMALLQLFALCAMTAFYYERRENMD-GQLGATRYAKLSSEESNA 106 VLMA+L L AL Y RR++++ G RY++ SS + A Sbjct: 1418 VLMAVLLLLALLTAALILYRRRQSIERGAFEGARYSRSSSSPTEA 1462
>NAC3_RAT (P70549) Sodium/calcium exchanger 3 precursor| (Na(+)/Ca(2+)-exchange protein 3) Length = 927 Score = 30.0 bits (66), Expect = 3.1 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = -1 Query: 240 AVLMALLQLFALCAMTAFYYERRENMDGQLGATRYAKLSS 121 A + L +FA ++ Y RR ++ G+LG R KL++ Sbjct: 862 AFSVTLFTIFAFVCLSVLLYRRRPHLGGELGGPRGCKLAT 901
>ARHGB_RAT (Q9ES67) Rho guanine nucleotide exchange factor 11 (RhoGEF glutamate| transport modulator GTRAP48) Length = 1527 Score = 29.6 bits (65), Expect = 4.0 Identities = 17/64 (26%), Positives = 24/64 (37%) Frame = +2 Query: 272 TLLPAHVLASVCTGERTAARAPVTAMYSTTCHFFPFASLHALPNAAAPWQPGSATATTTL 451 +LLP H + + GE P ++ S T H PW PGS T+ Sbjct: 1221 SLLPGHTVKTQAAGEPEDDLTPTPSVVSITSH---------------PWDPGSPGQAPTI 1265 Query: 452 KEQT 463 + T Sbjct: 1266 SDST 1269
>NAC3_HUMAN (P57103) Sodium/calcium exchanger 3 precursor| (Na(+)/Ca(2+)-exchange protein 3) Length = 927 Score = 29.6 bits (65), Expect = 4.0 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = -1 Query: 240 AVLMALLQLFALCAMTAFYYERRENMDGQLGATRYAKLSS 121 A + L +FA ++ Y RR ++ G+LG R KL++ Sbjct: 862 AFSVTLFTIFAFVCISVLLYRRRPHLGGELGGPRGCKLAT 901
>Y2989_METCA (Q602S2) UPF0078 membrane protein MCA2989| Length = 198 Score = 28.9 bits (63), Expect = 6.8 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = -1 Query: 333 ALAAVLSPVHTLARTCAGNSVALGLLLGFVYAV-LMALLQLFALCAMTAF 187 A L PV + G + ALG+LLGF + V LMALL + A+ F Sbjct: 89 AFVGHLYPVFFQFKGGKGVATALGVLLGFAWPVGLMALLTWIGVAALFRF 138
>CSTN1_DROME (Q9V498) Calsyntenin-1 precursor| Length = 978 Score = 28.5 bits (62), Expect = 8.9 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%) Frame = -2 Query: 131 SYH---RKNQTLDHSTCQLSHRLLLACNFHLLCRPGHIVIF 18 SYH R+N+TL T + CNFH+L +P H + F Sbjct: 45 SYHGLIRENETLVEITPLIKVNEEKICNFHILKKPYHEIPF 85
>3BP1_HUMAN (Q9Y3L3) SH3 domain-binding protein 1 (3BP-1)| Length = 701 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = +2 Query: 224 SAIRTA*TKPKSNPSATLLPAHVLASVCTGERTAARAP 337 +A+ T T P P+ PA LAS T ERT + P Sbjct: 502 TAVPTPATTPAPAPAPAPAPAPALASAATKERTESEVP 539 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,213,608 Number of Sequences: 219361 Number of extensions: 1079866 Number of successful extensions: 3242 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 3154 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3241 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)