ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart28g06 |
|---|---|
| Clone Library Name | barley_pub |
>emb|Y17386.1|TAE17386 Triticum aestivum mRNA for putative In2.1-like protein Length = 1031 Score = 513 bits (259), Expect = e-142 Identities = 307/323 (95%) Strand = Plus / Minus Query: 183 agcgaccgttatccttggcgacatcaccgcttcttcaagcaatcttgagatgcctcttgg 242 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 801 agcgaccgttatccttggcgacagcaccgcttcttcaagcaatcttgagatgcctcttgg 742 Query: 243 cagcttcaagcaaggttagcggggcatttttggtttgcttgtatgcttcgatcttgttca 302 |||| |||||||||| |||||| |||||||||||||||| || |||||||||||||||| Sbjct: 741 cagcatcaagcaaggccagcgggacatttttggtttgcttatacgcttcgatcttgttca 682 Query: 303 tgtcctcggtgtatctctcaaggttgggcctgtctttggtgatctcatagttcctcaggt 362 | ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct: 681 tctcctcggtgtatctctcaaggttgggcctgtctttggcgatctcgtagttcctcaggt 622 Query: 363 gggaatagtatatctgaaccctctccaagatcgtcacgtacgcaatatccaccaagctaa 422 || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 621 tagagtagtatatctgaaccctctccaagatcgtcacgtacgcaatgtccaccaagctaa 562 Query: 423 attggccaaggaagaacgggccgtcgctgaacttggacagggcagcttcgatcttgtcta 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 561 attggccaaggaagaacgggccgtcgctgaacttggacagggcagcttcgatcttgtcta 502 Query: 483 aagcggcaacagcttcgtctgac 505 ||| |||||||||||||||||| Sbjct: 501 gagcagcaacagcttcgtctgac 479 Score = 109 bits (55), Expect = 9e-21 Identities = 73/79 (92%) Strand = Plus / Minus Query: 8 agatggagtatgttattgttttataaaaagcatagcccttacaggttacaacatgaagtc 67 |||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||| Sbjct: 978 agatggagtacattattgtttcataaaaagcatagcccttacaggttacaacatggtgtc 919 Query: 68 acttattgggaagaaaaca 86 | ||||||||||||||||| Sbjct: 918 atttattgggaagaaaaca 900 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 109 tgataatggtgggaaaagaagccccag 135 |||||||||||| |||||||||||||| Sbjct: 885 tgataatggtggcaaaagaagccccag 859
>emb|X58573.1|ZMIN21 Maize In2-1 mRNA Length = 906 Score = 141 bits (71), Expect = 3e-30 Identities = 182/219 (83%) Strand = Plus / Minus Query: 287 gcttcgatcttgttcatgtcctcggtgtatctctcaaggttgggcctgtctttggtgatc 346 ||||||||||||||||| || ||| || || || |||||||||||| ||| || ||| Sbjct: 682 gcttcgatcttgttcatctcgtcgatgaattcctggaggttgggcctgccttgggcgatg 623 Query: 347 tcatagttcctcaggtgggaatagtatatctgaaccctctccaagatcgtcacgtacgca 406 || |||||||| || ||||||||||||||||||||||| |||| ||||| |||||||| Sbjct: 622 tcgtagttcctaagatgggaatagtatatctgaaccctttccagaatcgtaacgtacgct 563 Query: 407 atatccaccaagctaaattggccaaggaagaacgggccgtcgctgaacttggacagggca 466 | |||| ||||||| |||||||| |||||||| || |||||| ||||||||| ||| || Sbjct: 562 acatccgccaagctgaattggcctaggaagaagggcccgtcgtcgaacttggataggtca 503 Query: 467 gcttcgatcttgtctaaagcggcaacagcttcgtctgac 505 ||||||| || || | ||| |||||| ||||||||||| Sbjct: 502 gcttcgagtttatccagagccgcaacaacttcgtctgac 464
>ref|XM_493845.1| Oryza sativa (japonica cultivar-group), mRNA Length = 796 Score = 129 bits (65), Expect = 1e-26 Identities = 182/221 (82%) Strand = Plus / Minus Query: 260 agcggggcatttttggtttgcttgtatgcttcgatcttgttcatgtcctcggtgtatctc 319 |||||| ||||||| ||||| | ||||||||||| |||| || |||||| || || || Sbjct: 717 agcgggtcattttttgtttgtgtatatgcttcgattctgttgatttcctcgatgaatttc 658 Query: 320 tcaaggttgggcctgtctttggtgatctcatagttcctcaggtgggaatagtatatctga 379 || |||||||||| | | ||||||||||| || ||||| | || || |||||||||||| Sbjct: 657 tcgaggttgggccggccattggtgatctcgtatttccttatatgagagtagtatatctga 598 Query: 380 accctctccaagatcgtcacgtacgcaatatccaccaagctaaattggccaaggaagaac 439 | ||| || | || ||||| |||||||| ||||||||||||||||| ||||||||||| Sbjct: 597 atcctttcaataattgtcacatacgcaatgtccaccaagctaaattgtccaaggaagaat 538 Query: 440 gggccgtcgctgaacttggacagggcagcttcgatcttgtc 480 || || || | |||||| |||||||||||||| |||||||| Sbjct: 537 ggaccatcaccgaacttcgacagggcagcttctatcttgtc 497
>gb|AF237487.2|AF237487 Oryza sativa XIG mRNA, complete cds Length = 1058 Score = 129 bits (65), Expect = 1e-26 Identities = 182/221 (82%) Strand = Plus / Minus Query: 260 agcggggcatttttggtttgcttgtatgcttcgatcttgttcatgtcctcggtgtatctc 319 |||||| ||||||| ||||| | ||||||||||| |||| || |||||| || || || Sbjct: 718 agcgggtcattttttgtttgtgtatatgcttcgattctgttgatttcctcgatgaatttc 659 Query: 320 tcaaggttgggcctgtctttggtgatctcatagttcctcaggtgggaatagtatatctga 379 || |||||||||| | | ||||||||||| || ||||| | || || |||||||||||| Sbjct: 658 tcgaggttgggccggccattggtgatctcgtatttccttatatgagagtagtatatctga 599 Query: 380 accctctccaagatcgtcacgtacgcaatatccaccaagctaaattggccaaggaagaac 439 | ||| || | || ||||| |||||||| ||||||||||||||||| ||||||||||| Sbjct: 598 atcctttcaataattgtcacatacgcaatgtccaccaagctaaattgtccaaggaagaat 539 Query: 440 gggccgtcgctgaacttggacagggcagcttcgatcttgtc 480 || || || | |||||| |||||||||||||| |||||||| Sbjct: 538 ggaccatcaccgaacttcgacagggcagcttctatcttgtc 498
>ref|XM_493844.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1006 Score = 85.7 bits (43), Expect = 1e-13 Identities = 82/95 (86%) Strand = Plus / Minus Query: 401 tacgcaatatccaccaagctaaattggccaaggaagaacgggccgtcgctgaacttggac 460 |||||||| ||||||||||| || |||||||||||||| ||||| ||| ||||||| ||| Sbjct: 551 tacgcaatgtccaccaagctgaactggccaaggaagaatgggccatcgttgaactttgac 492 Query: 461 agggcagcttcgatcttgtctaaagcggcaacagc 495 || |||||||| || ||||| | ||| |||||||| Sbjct: 491 agagcagcttctattttgtcaagagcagcaacagc 457
>dbj|AK065887.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013044J05, full insert sequence Length = 1252 Score = 85.7 bits (43), Expect = 1e-13 Identities = 82/95 (86%) Strand = Plus / Minus Query: 401 tacgcaatatccaccaagctaaattggccaaggaagaacgggccgtcgctgaacttggac 460 |||||||| ||||||||||| || |||||||||||||| ||||| ||| ||||||| ||| Sbjct: 724 tacgcaatgtccaccaagctgaactggccaaggaagaatgggccatcgttgaactttgac 665 Query: 461 agggcagcttcgatcttgtctaaagcggcaacagc 495 || |||||||| || ||||| | ||| |||||||| Sbjct: 664 agagcagcttctattttgtcaagagcagcaacagc 630
>dbj|AK061849.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-F06, full insert sequence Length = 1029 Score = 85.7 bits (43), Expect = 1e-13 Identities = 82/95 (86%) Strand = Plus / Minus Query: 401 tacgcaatatccaccaagctaaattggccaaggaagaacgggccgtcgctgaacttggac 460 |||||||| ||||||||||| || |||||||||||||| ||||| ||| ||||||| ||| Sbjct: 600 tacgcaatgtccaccaagctgaactggccaaggaagaatgggccatcgttgaactttgac 541 Query: 461 agggcagcttcgatcttgtctaaagcggcaacagc 495 || |||||||| || ||||| | ||| |||||||| Sbjct: 540 agagcagcttctattttgtcaagagcagcaacagc 506
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 413 accaagctaaattggccaaggaagaacgggccgtcgctgaacttggacagggcagcttcg 472 |||||||||||||| ||||||||||| || || || | |||||| |||||||||||||| Sbjct: 9690392 accaagctaaattgtccaaggaagaatggaccatcaccgaacttcgacagggcagcttct 9690451 Query: 473 atcttgtc 480 |||||||| Sbjct: 9690452 atcttgtc 9690459 Score = 63.9 bits (32), Expect = 5e-07 Identities = 125/156 (80%) Strand = Plus / Plus Query: 260 agcggggcatttttggtttgcttgtatgcttcgatcttgttcatgtcctcggtgtatctc 319 |||||| ||||||| ||||| | ||||||||||| |||| || |||||| || || || Sbjct: 9689658 agcgggtcattttttgtttgtgtatatgcttcgattctgttgatttcctcgatgaatttc 9689717 Query: 320 tcaaggttgggcctgtctttggtgatctcatagttcctcaggtgggaatagtatatctga 379 || |||||||||| | | ||||||||||| || ||||| | || || |||||||||||| Sbjct: 9689718 tcgaggttgggccggccattggtgatctcgtatttccttatatgagagtagtatatctga 9689777 Query: 380 accctctccaagatcgtcacgtacgcaatatccacc 415 | ||| || | || ||||| |||||||| |||||| Sbjct: 9689778 atcctttcaataattgtcacatacgcaatgtccacc 9689813 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 413 accaagctaaattggccaaggaagaacgggccgtcgctgaacttggacagggcagcttcg 472 |||||||| || |||||||||||||| ||||| ||| ||||||| ||||| |||||||| Sbjct: 9685184 accaagctgaactggccaaggaagaatgggccatcgttgaactttgacagagcagcttct 9685243 Query: 473 atcttgtc 480 || ||||| Sbjct: 9685244 attttgtc 9685251 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 419 ctaaattggccaaggaagaacgggcc 444 |||||||||||||||||||| ||||| Sbjct: 9681172 ctaaattggccaaggaagaatgggcc 9681197
>gb|AC084405.6| Oryza sativa chromosome 3 BAC OSJNBa0044H10 genomic sequence, complete sequence Length = 165113 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 413 accaagctaaattggccaaggaagaacgggccgtcgctgaacttggacagggcagcttcg 472 |||||||||||||| ||||||||||| || || || | |||||| |||||||||||||| Sbjct: 111291 accaagctaaattgtccaaggaagaatggaccatcaccgaacttcgacagggcagcttct 111350 Query: 473 atcttgtc 480 |||||||| Sbjct: 111351 atcttgtc 111358 Score = 63.9 bits (32), Expect = 5e-07 Identities = 125/156 (80%) Strand = Plus / Plus Query: 260 agcggggcatttttggtttgcttgtatgcttcgatcttgttcatgtcctcggtgtatctc 319 |||||| ||||||| ||||| | ||||||||||| |||| || |||||| || || || Sbjct: 110557 agcgggtcattttttgtttgtgtatatgcttcgattctgttgatttcctcgatgaatttc 110616 Query: 320 tcaaggttgggcctgtctttggtgatctcatagttcctcaggtgggaatagtatatctga 379 || |||||||||| | | ||||||||||| || ||||| | || || |||||||||||| Sbjct: 110617 tcgaggttgggccggccattggtgatctcgtatttccttatatgagagtagtatatctga 110676 Query: 380 accctctccaagatcgtcacgtacgcaatatccacc 415 | ||| || | || ||||| |||||||| |||||| Sbjct: 110677 atcctttcaataattgtcacatacgcaatgtccacc 110712 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 413 accaagctaaattggccaaggaagaacgggccgtcgctgaacttggacagggcagcttcg 472 |||||||| || |||||||||||||| ||||| ||| ||||||| ||||| |||||||| Sbjct: 106083 accaagctgaactggccaaggaagaatgggccatcgttgaactttgacagagcagcttct 106142 Query: 473 atcttgtc 480 || ||||| Sbjct: 106143 attttgtc 106150 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 419 ctaaattggccaaggaagaacgggcc 444 |||||||||||||||||||| ||||| Sbjct: 102071 ctaaattggccaaggaagaatgggcc 102096
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 413 accaagctaaattggccaaggaagaacgggccgtcgctgaacttggacagggcagcttcg 472 |||||||||||||| ||||||||||| || || || | |||||| |||||||||||||| Sbjct: 9688513 accaagctaaattgtccaaggaagaatggaccatcaccgaacttcgacagggcagcttct 9688572 Query: 473 atcttgtc 480 |||||||| Sbjct: 9688573 atcttgtc 9688580 Score = 63.9 bits (32), Expect = 5e-07 Identities = 125/156 (80%) Strand = Plus / Plus Query: 260 agcggggcatttttggtttgcttgtatgcttcgatcttgttcatgtcctcggtgtatctc 319 |||||| ||||||| ||||| | ||||||||||| |||| || |||||| || || || Sbjct: 9687779 agcgggtcattttttgtttgtgtatatgcttcgattctgttgatttcctcgatgaatttc 9687838 Query: 320 tcaaggttgggcctgtctttggtgatctcatagttcctcaggtgggaatagtatatctga 379 || |||||||||| | | ||||||||||| || ||||| | || || |||||||||||| Sbjct: 9687839 tcgaggttgggccggccattggtgatctcgtatttccttatatgagagtagtatatctga 9687898 Query: 380 accctctccaagatcgtcacgtacgcaatatccacc 415 | ||| || | || ||||| |||||||| |||||| Sbjct: 9687899 atcctttcaataattgtcacatacgcaatgtccacc 9687934 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 413 accaagctaaattggccaaggaagaacgggccgtcgctgaacttggacagggcagcttcg 472 |||||||| || |||||||||||||| ||||| ||| ||||||| ||||| |||||||| Sbjct: 9683305 accaagctgaactggccaaggaagaatgggccatcgttgaactttgacagagcagcttct 9683364 Query: 473 atcttgtc 480 || ||||| Sbjct: 9683365 attttgtc 9683372 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 419 ctaaattggccaaggaagaacgggcc 444 |||||||||||||||||||| ||||| Sbjct: 9679293 ctaaattggccaaggaagaatgggcc 9679318
>gb|AY111952.1| Zea mays CL5438_1 mRNA sequence Length = 1008 Score = 63.9 bits (32), Expect = 5e-07 Identities = 131/164 (79%) Strand = Plus / Minus Query: 290 tcgatcttgttcatgtcctcggtgtatctctcaaggttgggcctgtctttggtgatctca 349 ||||||||||||| |||||| || || ||| ||||||||| ||| | || ||||| ||| Sbjct: 676 tcgatcttgttcacttcctcgatgaatttctgaaggttgggtctgccctttgtgatgtca 617 Query: 350 tagttcctcaggtgggaatagtatatctgaaccctctccaagatcgtcacgtacgcaata 409 |||||| | | | ||||||| |||||||| |||||| | || || || ||||||| Sbjct: 616 tagttctttatggtggaatagagtatctgaagcctctcgatgaacggtacatacgcaacg 557 Query: 410 tccaccaagctaaattggccaaggaagaacgggccgtcgctgaa 453 ||||||| || || || ||||||||||||||||||||| |||| Sbjct: 556 tccaccagactgaactgaccaaggaagaacgggccgtcgttgaa 513
>ref|XM_493843.1| Oryza sativa (japonica cultivar-group), mRNA Length = 885 Score = 48.1 bits (24), Expect = 0.028 Identities = 39/44 (88%) Strand = Plus / Minus Query: 401 tacgcaatatccaccaagctaaattggccaaggaagaacgggcc 444 |||||||| || |||| |||||||||||||||||||| ||||| Sbjct: 530 tacgcaatgtcaaccagactaaattggccaaggaagaatgggcc 487
>gb|AY332468.1| Oryza sativa (japonica cultivar-group) glutathione S-transferase (GST) mRNA, complete cds Length = 1092 Score = 48.1 bits (24), Expect = 0.028 Identities = 39/44 (88%) Strand = Plus / Minus Query: 401 tacgcaatatccaccaagctaaattggccaaggaagaacgggcc 444 |||||||| || |||| |||||||||||||||||||| ||||| Sbjct: 568 tacgcaatgtcaaccagactaaattggccaaggaagaatgggcc 525
>gb|AF249913.1|AF249913 Glycine max In2-1 protein mRNA, complete cds Length = 1024 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 404 gcaatatccaccaagctaaattggccaaggaagaa 438 |||||||||||||| || ||||||||||| ||||| Sbjct: 560 gcaatatccaccaaactgaattggccaagcaagaa 526
>dbj|AB087837.1| Pisum sativum GST mRNA for glutathione S-transferase, partial cds Length = 990 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 398 acgtacgcaatatccaccaagctaaattggccaag 432 |||||||||||||||||||| || ||||| ||||| Sbjct: 556 acgtacgcaatatccaccaaactgaattgaccaag 522
>gb|AC004168.2|AC004168 Homo sapiens chromosome 4 clone B159L21 map 4q25, complete sequence Length = 185566 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 86 atataaaagtaaataggtaatt 107 |||||||||||||||||||||| Sbjct: 17782 atataaaagtaaataggtaatt 17803
>emb|CT027663.2| Medicago truncatula chromosome 5 clone mth2-139g23, COMPLETE SEQUENCE Length = 133229 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 87 tataaaagtaaataggtaatta 108 |||||||||||||||||||||| Sbjct: 31392 tataaaagtaaataggtaatta 31371
>gb|AC102931.10| Mus musculus chromosome 7, clone RP24-221B5, complete sequence Length = 164298 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 91 aaagtaaataggtaattatgataat 115 |||||||||||||||| |||||||| Sbjct: 73622 aaagtaaataggtaataatgataat 73646
>gb|AC158575.3| Mus musculus chromosome 7, clone RP23-275H16, complete sequence Length = 221489 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 91 aaagtaaataggtaattatgataat 115 |||||||||||||||| |||||||| Sbjct: 190070 aaagtaaataggtaataatgataat 190046
>gb|AC026374.19| Homo sapiens 3 BAC RP11-336E10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 75385 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 agtatgttattgttttataaa 34 ||||||||||||||||||||| Sbjct: 13819 agtatgttattgttttataaa 13799
>gb|AC090984.5| Homo sapiens chromosome 15, clone RP11-500C12, complete sequence Length = 190664 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 87 tataaaagtaaataggtaattatga 111 ||||||||||||||||| ||||||| Sbjct: 145698 tataaaagtaaataggtcattatga 145674
>dbj|BS000063.1| Pan troglodytes chromosome 22 clone:PTB-428P03, map 22, complete sequences Length = 136131 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 79 agaaaacatataaaagtaaataggt 103 |||||| |||||||||||||||||| Sbjct: 25037 agaaaaaatataaaagtaaataggt 25013
>dbj|BS000062.1| Pan troglodytes chromosome 22 clone:PTB-045C17, map 22, complete sequences Length = 171187 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 79 agaaaacatataaaagtaaataggt 103 |||||| |||||||||||||||||| Sbjct: 135925 agaaaaaatataaaagtaaataggt 135901
>gb|AF240629.1|AF240629 Homo sapiens chromosome 21 map 21q21 clone B47C12, complete sequence Length = 151696 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 79 agaaaacatataaaagtaaataggt 103 |||||| |||||||||||||||||| Sbjct: 23906 agaaaaaatataaaagtaaataggt 23882
>dbj|AP001679.1| Homo sapiens genomic DNA, chromosome 21q, section 23/105 Length = 340000 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 79 agaaaacatataaaagtaaataggt 103 |||||| |||||||||||||||||| Sbjct: 209799 agaaaaaatataaaagtaaataggt 209775
>emb|AL109772.3|HS21N069 Homo sapiens chromosome 21 sequence from cosmid ICRFc103 9N06 map 21q21 region D21S189-LA297, complete sequence Length = 39175 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 79 agaaaacatataaaagtaaataggt 103 |||||| |||||||||||||||||| Sbjct: 19134 agaaaaaatataaaagtaaataggt 19158
>gb|AC161571.11| Mus musculus chromosome 7, clone RP23-403M22, complete sequence Length = 211052 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 tgtctttggtgatctcatag 352 |||||||||||||||||||| Sbjct: 134001 tgtctttggtgatctcatag 134020
>gb|AC161352.7| Mus musculus chromosome 3, clone RP23-129N8, complete sequence Length = 192165 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 49 caggttacaacatgaagtcactta 72 |||| ||||||||||||||||||| Sbjct: 126814 caggatacaacatgaagtcactta 126837
>gb|AC169510.1| Mus musculus BAC clone RP23-121E6 from chromosome 14, complete sequence Length = 214403 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 tctgaaccctctccaagatc 394 |||||||||||||||||||| Sbjct: 206022 tctgaaccctctccaagatc 206041
>gb|AC136901.17| Mus musculus chromosome 3, clone RP24-510H14, complete sequence Length = 129686 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 49 caggttacaacatgaagtcactta 72 |||| ||||||||||||||||||| Sbjct: 107647 caggatacaacatgaagtcactta 107624
>gb|AC150208.1| Pan troglodytes chromosome X clone PTB-043C05 map human ortholog p21.3, complete sequence Length = 194447 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 atttttggtttgcttgtatg 287 |||||||||||||||||||| Sbjct: 13871 atttttggtttgcttgtatg 13852
>emb|CT009532.6| Mouse DNA sequence from clone RP23-122B16 on chromosome 14, complete sequence Length = 187658 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 tctgaaccctctccaagatc 394 |||||||||||||||||||| Sbjct: 75980 tctgaaccctctccaagatc 75961
>ref|XM_761786.1| Giardia lamblia ATCC 50803 variant-specific surface protein (GLP_244_3196_1289) partial mRNA Length = 1908 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 aaaaacaagatggagtatgt 20 |||||||||||||||||||| Sbjct: 206 aaaaacaagatggagtatgt 225
>gb|DQ450070.1| Arachis hypogaea clone 7A4R17G putative IN2-1 protein mRNA, partial cds Length = 625 Score = 40.1 bits (20), Expect = 6.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 407 atatccaccaagctaaattggccaaggaagaa 438 ||||||||| |||| ||||| ||||||||||| Sbjct: 224 atatccacccagctgaattgaccaaggaagaa 193
>emb|CR378672.1| Photobacterium profundum SS9; segment 10/12 Length = 348526 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 acatataaaagtaaataggt 103 |||||||||||||||||||| Sbjct: 9624 acatataaaagtaaataggt 9643
>emb|CR407702.15| Zebrafish DNA sequence from clone DKEY-171M10 in linkage group 17, complete sequence Length = 155486 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 atgttattgttttataaaaa 36 |||||||||||||||||||| Sbjct: 1192 atgttattgttttataaaaa 1173
>gb|AC079904.31| Homo sapiens 12 BAC RP11-84J24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 197964 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 gtgataagagttcagtcttc 154 |||||||||||||||||||| Sbjct: 169298 gtgataagagttcagtcttc 169317
>gb|AC104137.5| Homo sapiens BAC clone RP11-807H7 from 4, complete sequence Length = 195930 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 ttattgttttataaaaagca 39 |||||||||||||||||||| Sbjct: 23769 ttattgttttataaaaagca 23788
>gb|AC026583.10| Homo sapiens chromosome 15, clone RP11-20C17, complete sequence Length = 175472 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 tgttattgttttataaaaag 37 |||||||||||||||||||| Sbjct: 123547 tgttattgttttataaaaag 123528
>gb|AC025524.9| Homo sapiens chromosome 8, clone RP11-705O24, complete sequence Length = 165720 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 tacaacatgaagtcacttat 73 |||||||||||||||||||| Sbjct: 58209 tacaacatgaagtcacttat 58190
>gb|AC024121.5| Homo sapiens chromosome 5 clone CTB-2J5, complete sequence Length = 132728 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 acaacatgaagtcacttatt 74 |||||||||||||||||||| Sbjct: 2277 acaacatgaagtcacttatt 2258
>gb|AC022449.5| Homo sapiens chromosome 5 clone RP11-93O7, complete sequence Length = 161121 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 acaacatgaagtcacttatt 74 |||||||||||||||||||| Sbjct: 90217 acaacatgaagtcacttatt 90198
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome Length = 5751492 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 277 ttgcttgtatgcttcgatcttgttcatg 304 |||||| |||||||||||||||| |||| Sbjct: 2965746 ttgcttatatgcttcgatcttgtccatg 2965719
>gb|AC084759.2|AC084759 Homo sapiens chromosome 15 clone RP11-643A5 map 15q21.3, complete sequence Length = 173921 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 gtgataagagttcagtcttc 154 |||||||||||||||||||| Sbjct: 15806 gtgataagagttcagtcttc 15787
>emb|CT737307.2| CH251-89L9, complete sequence Length = 180080 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 atttttggtttgcttgtatg 287 |||||||||||||||||||| Sbjct: 94674 atttttggtttgcttgtatg 94693
>gb|DQ294619.1| Arachis hypogaea IN2-1 protein-like mRNA, partial sequence Length = 425 Score = 40.1 bits (20), Expect = 6.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 407 atatccaccaagctaaattggccaaggaagaa 438 ||||||||| |||| ||||| ||||||||||| Sbjct: 256 atatccacccagctgaattgaccaaggaagaa 225
>dbj|AP004902.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT04G24, TM0060, complete sequence Length = 123078 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 attatgataatggtgggaaa 124 |||||||||||||||||||| Sbjct: 8449 attatgataatggtgggaaa 8430
>emb|AL137390.1|HSM802081 Homo sapiens mRNA; cDNA DKFZp434P0626 (from clone DKFZp434P0626) Length = 1202 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 tacaacatgaagtcacttat 73 |||||||||||||||||||| Sbjct: 117 tacaacatgaagtcacttat 136 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,697,501 Number of Sequences: 3902068 Number of extensions: 4697501 Number of successful extensions: 102865 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 102665 Number of HSP's gapped (non-prelim): 198 length of query: 505 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 483 effective length of database: 17,147,199,772 effective search space: 8282097489876 effective search space used: 8282097489876 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
