Clone Name | rbart28g01 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | EOMES_HUMAN (O95936) Eomesodermin homolog | 29 | 6.5 | 2 | ATP10_ASHGO (Q757F3) Mitochondrial ATPase complex subunit ATP10 | 29 | 6.5 | 3 | JHD1_ASPFU (Q4WHB7) JmjC domain-containing histone demethylation... | 29 | 8.5 |
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>EOMES_HUMAN (O95936) Eomesodermin homolog| Length = 686 Score = 29.3 bits (64), Expect = 6.5 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 2/26 (7%) Frame = +1 Query: 91 MFVAPGGKRYPFGS--PVGIAPSSAC 162 ++ AP G RYP+GS P G P++AC Sbjct: 176 VYPAPNGARYPYGSMLPPGGFPAAAC 201
>ATP10_ASHGO (Q757F3) Mitochondrial ATPase complex subunit ATP10| Length = 272 Score = 29.3 bits (64), Expect = 6.5 Identities = 12/17 (70%), Positives = 12/17 (70%) Frame = -2 Query: 111 SSWRDEHQRPFPHLDRR 61 S WR EH R FPHLD R Sbjct: 103 SYWRAEHARYFPHLDGR 119
>JHD1_ASPFU (Q4WHB7) JmjC domain-containing histone demethylation protein 1 (EC| 1.14.11.-) Length = 1418 Score = 28.9 bits (63), Expect = 8.5 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = +2 Query: 428 RPEAVRRNAAPGPGRLQRHACRARRLR 508 +P ++ R++ GP R+ ACR RR+R Sbjct: 988 KPRSIHRSSGLGPKRVACDACRKRRIR 1014 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,455,547 Number of Sequences: 219361 Number of extensions: 1225032 Number of successful extensions: 3993 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 3833 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3991 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3754426130 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)