ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart28g01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EOMES_HUMAN (O95936) Eomesodermin homolog 29 6.5
2ATP10_ASHGO (Q757F3) Mitochondrial ATPase complex subunit ATP10 29 6.5
3JHD1_ASPFU (Q4WHB7) JmjC domain-containing histone demethylation... 29 8.5

>EOMES_HUMAN (O95936) Eomesodermin homolog|
          Length = 686

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = +1

Query: 91  MFVAPGGKRYPFGS--PVGIAPSSAC 162
           ++ AP G RYP+GS  P G  P++AC
Sbjct: 176 VYPAPNGARYPYGSMLPPGGFPAAAC 201



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>ATP10_ASHGO (Q757F3) Mitochondrial ATPase complex subunit ATP10|
          Length = 272

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = -2

Query: 111 SSWRDEHQRPFPHLDRR 61
           S WR EH R FPHLD R
Sbjct: 103 SYWRAEHARYFPHLDGR 119



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>JHD1_ASPFU (Q4WHB7) JmjC domain-containing histone demethylation protein 1 (EC|
            1.14.11.-)
          Length = 1418

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 428  RPEAVRRNAAPGPGRLQRHACRARRLR 508
            +P ++ R++  GP R+   ACR RR+R
Sbjct: 988  KPRSIHRSSGLGPKRVACDACRKRRIR 1014


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,455,547
Number of Sequences: 219361
Number of extensions: 1225032
Number of successful extensions: 3993
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3991
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3754426130
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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