ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart28f09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZN394_RAT (Q9Z2K3) Zinc finger protein 394 (Zinc finger protein ... 31 2.1

>ZN394_RAT (Q9Z2K3) Zinc finger protein 394 (Zinc finger protein 94) (Zfp-94)|
           (Zinc finger protein Y1) (RLZF-Y)
          Length = 536

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = -1

Query: 240 CYCR*VGSILTWFSLSYI*FRHQVRCLGYR*HDTE*LKRNWEQKLHIFKH*WLGLGRANL 61
           C C   G I    SL    F+HQ    G R H  E  +++++Q+  +FKH  +  G    
Sbjct: 412 CKCEECGEIFHISSL----FKHQRLHKGERPHKCEVCEKSFKQRSDLFKHQRIHTGEKPY 467

Query: 60  LRFFCK 43
           + F C+
Sbjct: 468 MCFVCE 473


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,967,380
Number of Sequences: 219361
Number of extensions: 1196289
Number of successful extensions: 2345
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2345
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3465624120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top