ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart28f03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009334.1| Triticum aestivum clone wlm4.pk0003.g1:fis, full ... 622 e-175
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
3dbj|AP005446.3| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
4gb|AC155820.2| Mus musculus BAC clone RP23-360J10 from chromosom... 50 0.007
5ref|XM_464509.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.029
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.029
7dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.029
8dbj|AK068100.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.029
9ref|XM_974651.1| PREDICTED: Mus musculus UTP20, small subunit (S... 46 0.12
10ref|XM_917289.2| PREDICTED: Mus musculus UTP20, small subunit (S... 46 0.12
11ref|XM_125867.8| PREDICTED: Mus musculus UTP20, small subunit (S... 46 0.12
12dbj|AK145554.1| Mus musculus blastocyst blastocyst cDNA, RIKEN f... 46 0.12
13gb|BC084586.1| Mus musculus UTP20, small subunit (SSU) processom... 46 0.12
14ref|XM_954249.1| Neurospora crassa OR74A hypothetical protein (N... 44 0.46
15ref|XM_328957.1| Neurospora crassa OR74A hypothetical protein (N... 44 0.46
16gb|AC097357.2| Homo sapiens chromosome 3 clone RP11-137N22, comp... 44 0.46
17gb|AC098480.2| Homo sapiens chromosome 3 clone RP11-149J4, compl... 44 0.46
18gb|AC104052.9| Homo sapiens chromosome 8, clone CTD-2358M3, comp... 44 0.46
19gb|AC167331.3| Mus musculus chromosome 1, clone RP23-301L19, com... 42 1.8
20gb|AC161234.7| Mus musculus chromosome 1, clone RP24-392G9, comp... 42 1.8
21emb|X12493.1|SCADR6 Yeast ADR6 gene for transcription factor 42 1.8
22emb|CT010499.9| Mouse DNA sequence from clone RP23-211K24 on chr... 42 1.8
23gb|U33335.1|U33335 Saccharomyces cerevisiae chromosome XVI, left... 42 1.8
24ref|XM_457720.1| Debaryomyces hansenii CBS767 hypothetical prote... 40 7.1
25gb|AC146092.2| Pan troglodytes BAC clone RP43-48I3 from 7, compl... 40 7.1
26ref|XM_456125.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F23463g ... 40 7.1
27gb|AY813641.1| Schistosoma japonicum SJCHGC05602 protein mRNA, c... 40 7.1
28gb|AC152064.3| Pan troglodytes BAC clone RP43-134I6 from chromos... 40 7.1
29gb|AC126046.3| Mus musculus BAC clone RP23-176P24 from chromosom... 40 7.1
30emb|CR456631.7| Zebrafish DNA sequence from clone DKEY-101N15 in... 40 7.1
31gb|AC135081.3| Mus musculus BAC clone RP24-131A24 from chromosom... 40 7.1
32gb|AY222881.1| Schistosoma japonicum clone ZZZ204 mRNA sequence 40 7.1
33gb|AF525745.1| Danio rerio AMPA receptor subunit GluR3A (glur3a)... 40 7.1
34emb|AL354942.10| Human DNA sequence from clone RP11-57O22 on chr... 40 7.1
35emb|CR382135.1| Debaryomyces hansenii chromosome C of strain CBS... 40 7.1
36emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 7.1
37emb|AL732401.6| Mouse DNA sequence from clone RP23-405K20 on chr... 40 7.1
38gb|AC093107.3| Homo sapiens chromosome 7 clone RP11-751K21, comp... 40 7.1
39dbj|AK035727.1| Mus musculus adult male urinary bladder cDNA, RI... 40 7.1
40gb|AC155320.2| Pan troglodytes BAC clone CH251-421K1 from chromo... 40 7.1
41ref|NM_198339.1| Danio rerio glutamate receptor, ionotropic, AMP... 40 7.1
42gb|AC009161.14| Homo sapiens chromosome 16 clone RP11-75D3, comp... 40 7.1
43emb|CT025748.16| Zebrafish DNA sequence from clone CH73-166N24 i... 40 7.1
44emb|BX001007.6| Zebrafish DNA sequence from clone DKEY-97C13, co... 40 7.1
45gb|AC152167.3| Mus musculus BAC clone RP23-330B16 from 7, comple... 40 7.1
46emb|AL929443.4| Mouse DNA sequence from clone RP23-467A7 on chro... 40 7.1 
>gb|BT009334.1| Triticum aestivum clone wlm4.pk0003.g1:fis, full insert mRNA sequence
          Length = 1523

 Score =  622 bits (314), Expect = e-175
 Identities = 402/431 (93%), Gaps = 4/431 (0%)
 Strand = Plus / Minus

                                                                        
Query: 98   ttacaggatgatttactcatagcttacaggacatacatatgacagtacattgccaaagta 157
            |||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 1434 ttacaggatgatttactcctagcttagaggacatacatatgacagcacattgccaaagta 1375

                                                                        
Query: 158  tacatcaggtgaataggtggttatttctatctagtatacatccgttgtttcttctacctc 217
            |||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 1374 tacaacaggtgaataggtggttatttctatctagtatacatcggttgcttcttctacctc 1315

                                                                        
Query: 218  agtcttgcaccatggaactggtcaccccacaaacatcagcaggccggtcaagcaaacgtc 277
            ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||
Sbjct: 1314 agtcttgcaccatggaactggtcaccccacaaacaacagcaggctggtcaagcaaacatc 1255

                                                                        
Query: 278  gcaaataccgaaatggatcatcaatttcatcacagcaacacacatttgtcatgccacgtc 337
            ||||| ||||||||||||||||| ||||||||||||||||||||| |||| ||||||  |
Sbjct: 1254 gcaaacaccgaaatggatcatcagtttcatcacagcaacacacatctgtcgtgccacacc 1195

                                                                        
Query: 338  gctgacatcttacacggacaccgttatttatggtcgccattggcagacccatcctgctca 397
            ||||||||    ||||||||||||||||| |||||||||| ||||||||||| ||| |||
Sbjct: 1194 gctgacat----cacggacaccgttatttttggtcgccatcggcagacccattctgttca 1139

                                                                        
Query: 398  ctgagcttgtgaaactcggcctggatgacctccacaatcatggcgtcctcggggtcttgt 457
            | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| 
Sbjct: 1138 ccgagcttgtgaaactcggcctggatgacctccacaatcatggcgtcatcggggtcttga 1079

                                                                        
Query: 458  tcggggatgtctacatgcaaagaaccctgcttgatgagttcctggttcaacgcctgctgc 517
            |||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 1078 tcggggatgtctacgtgcaaagaaccctgcttgatgagttcctgattcagcgcctgctgc 1019

                       
Query: 518  tcgatgtaatg 528
            |||||||||||
Sbjct: 1018 tcgatgtaatg 1008



 Score =  157 bits (79), Expect = 4e-35
 Identities = 97/103 (94%)
 Strand = Plus / Minus

                                                                        
Query: 3    tggcaaagatcaagatgcaccatttatttctgattgaaggatgatacactcaagattatt 62
            |||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 1506 tggcaaaggtcaagatgcaccatttatttctgattgaaggatggtactctcaagattatt 1447

                                                       
Query: 63   ttagcatccatgttacaggatgatttagtcctagcttacagga 105
            || |||||||||||||||||||||||| |||||||||| ||||
Sbjct: 1446 tttgcatccatgttacaggatgatttactcctagcttagagga 1404
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 119/145 (82%)
 Strand = Plus / Plus

                                                                            
Query: 371      tcgccattggcagacccatcctgctcactgagcttgtgaaactcggcctggatgacctcc 430
                ||||||||| |||| || | |||||| | |||||| || |||||||| | ||||||||| 
Sbjct: 23759175 tcgccattgacagaaccgttctgctcgccgagcttatggaactcggcttcgatgacctcg 23759234

                                                                            
Query: 431      acaatcatggcgtcctcggggtcttgttcggggatgtctacatgcaaagaaccctgcttg 490
                || ||| |||| ||||| || ||||| || ||||| |  |||||||  || |||||||||
Sbjct: 23759235 acgatcttggcatcctcaggatcttggtcagggatattcacatgcagggagccctgcttg 23759294

                                         
Query: 491      atgagttcctggttcaacgcctgct 515
                ||||| ||||||||||| |||||||
Sbjct: 23759295 atgagctcctggttcaatgcctgct 23759319
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>dbj|AP005446.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0029C06
          Length = 156500

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 119/145 (82%)
 Strand = Plus / Plus

                                                                          
Query: 371    tcgccattggcagacccatcctgctcactgagcttgtgaaactcggcctggatgacctcc 430
              ||||||||| |||| || | |||||| | |||||| || |||||||| | ||||||||| 
Sbjct: 107251 tcgccattgacagaaccgttctgctcgccgagcttatggaactcggcttcgatgacctcg 107310

                                                                          
Query: 431    acaatcatggcgtcctcggggtcttgttcggggatgtctacatgcaaagaaccctgcttg 490
              || ||| |||| ||||| || ||||| || ||||| |  |||||||  || |||||||||
Sbjct: 107311 acgatcttggcatcctcaggatcttggtcagggatattcacatgcagggagccctgcttg 107370

                                       
Query: 491    atgagttcctggttcaacgcctgct 515
              ||||| ||||||||||| |||||||
Sbjct: 107371 atgagctcctggttcaatgcctgct 107395
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>gb|AC155820.2| Mus musculus BAC clone RP23-360J10 from chromosome 10, complete sequence
          Length = 221801

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 239    tcaccccacaaacatcagcaggccg 263
              |||||||||||||||||||||||||
Sbjct: 122380 tcaccccacaaacatcagcaggccg 122404
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>ref|XM_464509.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1561

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 66/80 (82%)
 Strand = Plus / Minus

                                                                        
Query: 374  ccattggcagacccatcctgctcactgagcttgtgaaactcggcctggatgacctccaca 433
            |||||||| || |||| |||||||| || ||| || || || || ||||||||||| |||
Sbjct: 1206 ccattggcggatccattctgctcaccgatcttctggaattcagcttggatgacctcaaca 1147

                                
Query: 434  atcatggcgtcctcggggtc 453
            ||| | ||||| ||||||||
Sbjct: 1146 atctttgcgtcatcggggtc 1127
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 66/80 (82%)
 Strand = Plus / Minus

                                                                           
Query: 374     ccattggcagacccatcctgctcactgagcttgtgaaactcggcctggatgacctccaca 433
               |||||||| || |||| |||||||| || ||| || || || || ||||||||||| |||
Sbjct: 5609096 ccattggcggatccattctgctcaccgatcttctggaattcagcttggatgacctcaaca 5609037

                                   
Query: 434     atcatggcgtcctcggggtc 453
               ||| | ||||| ||||||||
Sbjct: 5609036 atctttgcgtcatcggggtc 5609017
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>dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0419A09
          Length = 168064

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 66/80 (82%)
 Strand = Plus / Minus

                                                                         
Query: 374   ccattggcagacccatcctgctcactgagcttgtgaaactcggcctggatgacctccaca 433
             |||||||| || |||| |||||||| || ||| || || || || ||||||||||| |||
Sbjct: 36832 ccattggcggatccattctgctcaccgatcttctggaattcagcttggatgacctcaaca 36773

                                 
Query: 434   atcatggcgtcctcggggtc 453
             ||| | ||||| ||||||||
Sbjct: 36772 atctttgcgtcatcggggtc 36753
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>dbj|AK068100.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013130K11, full
            insert sequence
          Length = 1560

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 66/80 (82%)
 Strand = Plus / Minus

                                                                        
Query: 374  ccattggcagacccatcctgctcactgagcttgtgaaactcggcctggatgacctccaca 433
            |||||||| || |||| |||||||| || ||| || || || || ||||||||||| |||
Sbjct: 1205 ccattggcggatccattctgctcaccgatcttctggaattcagcttggatgacctcaaca 1146

                                
Query: 434  atcatggcgtcctcggggtc 453
            ||| | ||||| ||||||||
Sbjct: 1145 atctttgcgtcatcggggtc 1126
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>ref|XM_974651.1| PREDICTED: Mus musculus UTP20, small subunit (SSU) processome
            component, homolog (yeast), transcript variant 3 (Utp20),
            mRNA
          Length = 9585

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 241  accccacaaacatcagcaggccg 263
            |||||||||||||||||||||||
Sbjct: 1204 accccacaaacatcagcaggccg 1182
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>ref|XM_917289.2| PREDICTED: Mus musculus UTP20, small subunit (SSU) processome
            component, homolog (yeast), transcript variant 4 (Utp20),
            mRNA
          Length = 9582

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 241  accccacaaacatcagcaggccg 263
            |||||||||||||||||||||||
Sbjct: 1204 accccacaaacatcagcaggccg 1182
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>ref|XM_125867.8| PREDICTED: Mus musculus UTP20, small subunit (SSU) processome
            component, homolog (yeast), transcript variant 1 (Utp20),
            mRNA
          Length = 9585

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 241  accccacaaacatcagcaggccg 263
            |||||||||||||||||||||||
Sbjct: 1204 accccacaaacatcagcaggccg 1182
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>dbj|AK145554.1| Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched
            library, clone:I1C0015E09 product:DRIM protein homolog
            [Homo sapiens], full insert sequence
          Length = 2843

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 241  accccacaaacatcagcaggccg 263
            |||||||||||||||||||||||
Sbjct: 1173 accccacaaacatcagcaggccg 1151
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>gb|BC084586.1| Mus musculus UTP20, small subunit (SSU) processome component, homolog
            (yeast), mRNA (cDNA clone IMAGE:30475396), partial cds
          Length = 2924

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 241  accccacaaacatcagcaggccg 263
            |||||||||||||||||||||||
Sbjct: 1203 accccacaaacatcagcaggccg 1181
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>ref|XM_954249.1| Neurospora crassa OR74A hypothetical protein (NCU08252.1) partial
           mRNA
          Length = 1401

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 252 atcagcaggccggtcaagcaaacgtc 277
           |||| |||||||||||||||||||||
Sbjct: 389 atcaacaggccggtcaagcaaacgtc 414
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>ref|XM_328957.1| Neurospora crassa OR74A hypothetical protein (NCU08252.1) partial
           mRNA
          Length = 1401

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 252 atcagcaggccggtcaagcaaacgtc 277
           |||| |||||||||||||||||||||
Sbjct: 389 atcaacaggccggtcaagcaaacgtc 414
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>gb|AC097357.2| Homo sapiens chromosome 3 clone RP11-137N22, complete sequence
          Length = 162277

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 460   ggggatgtctacatgcaaagaa 481
             ||||||||||||||||||||||
Sbjct: 15729 ggggatgtctacatgcaaagaa 15708
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>gb|AC098480.2| Homo sapiens chromosome 3 clone RP11-149J4, complete sequence
          Length = 188681

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 460    ggggatgtctacatgcaaagaa 481
              ||||||||||||||||||||||
Sbjct: 134058 ggggatgtctacatgcaaagaa 134037
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>gb|AC104052.9| Homo sapiens chromosome 8, clone CTD-2358M3, complete sequence
          Length = 90940

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 177   gttatttctatctagtatacat 198
             ||||||||||||||||||||||
Sbjct: 36579 gttatttctatctagtatacat 36600
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>gb|AC167331.3| Mus musculus chromosome 1, clone RP23-301L19, complete sequence
          Length = 197718

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 121    ttacaggacatacatatgaca 141
              |||||||||||||||||||||
Sbjct: 132309 ttacaggacatacatatgaca 132289
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>gb|AC161234.7| Mus musculus chromosome 1, clone RP24-392G9, complete sequence
          Length = 141914

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 121    ttacaggacatacatatgaca 141
              |||||||||||||||||||||
Sbjct: 136461 ttacaggacatacatatgaca 136481
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>emb|X12493.1|SCADR6 Yeast ADR6 gene for transcription factor
          Length = 4830

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 288  aaatggatcatcaatttcatc 308
            |||||||||||||||||||||
Sbjct: 3380 aaatggatcatcaatttcatc 3360
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>emb|CT010499.9| Mouse DNA sequence from clone RP23-211K24 on chromosome 9, complete
             sequence
          Length = 212470

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 43    atgatacactcaagattattt 63
             |||||||||||||||||||||
Sbjct: 85325 atgatacactcaagattattt 85345
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>gb|U33335.1|U33335 Saccharomyces cerevisiae chromosome XVI, left arm cosmid 9758
          Length = 35550

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 288  aaatggatcatcaatttcatc 308
            |||||||||||||||||||||
Sbjct: 3380 aaatggatcatcaatttcatc 3360
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>ref|XM_457720.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0C01023g)
            partial mRNA
          Length = 2178

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 92   cctagcttacaggatgattt 111
            ||||||||||||||||||||
Sbjct: 1855 cctagcttacaggatgattt 1874
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>gb|AC146092.2| Pan troglodytes BAC clone RP43-48I3 from 7, complete sequence
          Length = 174070

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                         
Query: 157   atacatcaggtg-aataggtggttattt 183
             |||||||||||| |||||||||||||||
Sbjct: 37755 atacatcaggtggaataggtggttattt 37782
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>ref|XM_456125.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F23463g predicted mRNA
          Length = 3042

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 418 ctggatgacctccacaatca 437
           ||||||||||||||||||||
Sbjct: 747 ctggatgacctccacaatca 766
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>gb|AY813641.1| Schistosoma japonicum SJCHGC05602 protein mRNA, complete cds
          Length = 818

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 12  tcaagatgcaccatttattt 31
           ||||||||||||||||||||
Sbjct: 364 tcaagatgcaccatttattt 383
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>gb|AC152064.3| Pan troglodytes BAC clone RP43-134I6 from chromosome 7, complete sequence
          Length = 179272

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                          
Query: 157    atacatcaggtg-aataggtggttattt 183
              |||||||||||| |||||||||||||||
Sbjct: 128307 atacatcaggtggaataggtggttattt 128280
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>gb|AC126046.3| Mus musculus BAC clone RP23-176P24 from chromosome 19, complete sequence
          Length = 240536

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 482    ccctgcttgatgagttcctg 501
              ||||||||||||||||||||
Sbjct: 133312 ccctgcttgatgagttcctg 133293
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>emb|CR456631.7| Zebrafish DNA sequence from clone DKEY-101N15 in linkage group 12,
             complete sequence
          Length = 92620

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 47    tacactcaagattattttag 66
             ||||||||||||||||||||
Sbjct: 64507 tacactcaagattattttag 64488
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>gb|AC135081.3| Mus musculus BAC clone RP24-131A24 from chromosome 7, complete sequence
          Length = 163138

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     agattattttagcatccatg 74
              ||||||||||||||||||||
Sbjct: 124733 agattattttagcatccatg 124714
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>gb|AY222881.1| Schistosoma japonicum clone ZZZ204 mRNA sequence
          Length = 1167

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 12  tcaagatgcaccatttattt 31
           ||||||||||||||||||||
Sbjct: 541 tcaagatgcaccatttattt 560
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>gb|AF525745.1| Danio rerio AMPA receptor subunit GluR3A (glur3a) mRNA, complete cds
          Length = 2719

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 273  acgtcgcaaataccgaaatg 292
            ||||||||||||||||||||
Sbjct: 1006 acgtcgcaaataccgaaatg 987
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>emb|AL354942.10| Human DNA sequence from clone RP11-57O22 on chromosome 6 Contains
            part of the gene for a novel protein (FLJ32724) and a CpG
            island, complete sequence
          Length = 198217

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 166  gtgaataggtggttatttctatct 189
            |||||||||||||||||| |||||
Sbjct: 7806 gtgaataggtggttatttgtatct 7829
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>emb|CR382135.1| Debaryomyces hansenii chromosome C of strain CBS767 of Debaryomyces
             hansenii
          Length = 1592360

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 92    cctagcttacaggatgattt 111
             ||||||||||||||||||||
Sbjct: 95850 cctagcttacaggatgattt 95831
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>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 2602197

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 418     ctggatgacctccacaatca 437
               ||||||||||||||||||||
Sbjct: 2193985 ctggatgacctccacaatca 2194004
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>emb|AL732401.6| Mouse DNA sequence from clone RP23-405K20 on chromosome 11 Contains
             part of the Slit3 gene for slit homolog 3 (Drosophila),
             complete sequence
          Length = 89624

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    aggatgatacactcaagatt 59
             ||||||||||||||||||||
Sbjct: 57132 aggatgatacactcaagatt 57151
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>gb|AC093107.3| Homo sapiens chromosome 7 clone RP11-751K21, complete sequence
          Length = 197837

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                         
Query: 157   atacatcaggtg-aataggtggttattt 183
             |||||||||||| |||||||||||||||
Sbjct: 36733 atacatcaggtggaataggtggttattt 36760
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>dbj|AK035727.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length
            enriched library, clone:9530096I22 product:slit homolog 3
            (Drosophila), full insert sequence
          Length = 2203

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 40   aggatgatacactcaagatt 59
            ||||||||||||||||||||
Sbjct: 1153 aggatgatacactcaagatt 1172
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>gb|AC155320.2| Pan troglodytes BAC clone CH251-421K1 from chromosome unknown, complete
              sequence
          Length = 185966

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 178    ttatttctatctagtataca 197
              ||||||||||||||||||||
Sbjct: 158074 ttatttctatctagtataca 158093
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>ref|NM_198339.1| Danio rerio glutamate receptor, ionotropic, AMPA 3.1 (gria3.1), mRNA
          Length = 2719

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 273  acgtcgcaaataccgaaatg 292
            ||||||||||||||||||||
Sbjct: 1006 acgtcgcaaataccgaaatg 987
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>gb|AC009161.14| Homo sapiens chromosome 16 clone RP11-75D3, complete sequence
          Length = 180222

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 178   ttatttctatctagtataca 197
             ||||||||||||||||||||
Sbjct: 87629 ttatttctatctagtataca 87648
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>emb|CT025748.16| Zebrafish DNA sequence from clone CH73-166N24 in linkage group 5,
             complete sequence
          Length = 117231

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 273   acgtcgcaaataccgaaatg 292
             ||||||||||||||||||||
Sbjct: 40382 acgtcgcaaataccgaaatg 40363
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>emb|BX001007.6| Zebrafish DNA sequence from clone DKEY-97C13, complete sequence
          Length = 113198

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 309   acagcaacacacatttgtca 328
             ||||||||||||||||||||
Sbjct: 92927 acagcaacacacatttgtca 92908
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>gb|AC152167.3| Mus musculus BAC clone RP23-330B16 from 7, complete sequence
          Length = 215518

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 55     agattattttagcatccatg 74
              ||||||||||||||||||||
Sbjct: 203786 agattattttagcatccatg 203805
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>emb|AL929443.4| Mouse DNA sequence from clone RP23-467A7 on chromosome 2, complete
              sequence
          Length = 189821

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 37     tgaaggatgatacactcaag 56
              ||||||||||||||||||||
Sbjct: 186318 tgaaggatgatacactcaag 186337


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,454,619
Number of Sequences: 3902068
Number of extensions: 4454619
Number of successful extensions: 85981
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 85839
Number of HSP's gapped (non-prelim): 144
length of query: 528
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 505
effective length of database: 17,143,297,704
effective search space: 8657365340520
effective search space used: 8657365340520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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