ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart28e11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_196176.1| Oryza sativa (japonica cultivar-group) putative... 188 1e-44
2gb|AC114474.2| Genomic sequence for Oryza sativa, Nipponbare str... 188 1e-44
3gb|AC092748.2| Genomic sequence for Oryza sativa, Nipponbare str... 188 1e-44
4dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 188 1e-44
5gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 188 1e-44
6ref|NM_191411.1| Oryza sativa (japonica cultivar-group), predic... 165 2e-37
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 165 2e-37
8dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic D... 165 2e-37
9dbj|AB162137.1| Oryza sativa (japonica cultivar-group) TDC gene ... 165 2e-37
10dbj|AK065830.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 2e-37
11gb|AY111785.1| Zea mays CL244_1 mRNA sequence 101 2e-18
12ref|XM_475687.1| Oryza sativa (japonica cultivar-group), predic... 68 3e-08
13gb|AC108873.2| Oryza sativa (japonica cultivar-group) chromosome... 68 3e-08
14dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
15emb|AL390243.22| Human DNA sequence from clone RP6-102O10 on chr... 50 0.007
16ref|NM_196380.1| Oryza sativa (japonica cultivar-group) putative... 46 0.11
17gb|AC021891.6| Oryza sativa (japonica cultivar-group) chromosome... 46 0.11
18gb|AF078790.1| Caenorhabditis elegans cosmid F36H12, complete se... 44 0.45
19emb|AL590365.14| Human DNA sequence from clone RP11-455B2 on chr... 42 1.8
20gb|AC021549.9| Homo sapiens chromosome 18, clone RP11-650P15, co... 42 1.8
21ref|NM_012398.1| Homo sapiens phosphatidylinositol-4-phosphate 5... 40 7.1
22gb|AC124807.11| Mus musculus chromosome 3, clone RP23-137I13, co... 40 7.1
23ref|XM_752556.1| Ustilago maydis 521 hypothetical protein (UM015... 40 7.1
24gb|BC004149.2| Homo sapiens phosphatidylinositol-4-phosphate 5-k... 40 7.1
25emb|AL138712.19| Human DNA sequence from clone RP11-502P18 on ch... 40 7.1
26gb|AC111678.6| Rattus norvegicus 18 BAC CH230-60A14 (Children's ... 40 7.1
27emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete ... 40 7.1
28emb|BX640430.1| Bordetella parapertussis strain 12822, complete ... 40 7.1
29emb|BX640417.1| Bordetella pertussis strain Tohama I, complete g... 40 7.1
30gb|AC114147.5| Rattus norvegicus BAC CH230-144F3 (Children's Ho... 40 7.1
31gb|AE005705.1| Caulobacter crescentus CB15 section 31 of 359 of ... 40 7.1
32gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 7.1
33dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
34emb|BX000696.19| Zebrafish DNA sequence from clone CH211-107E16 ... 40 7.1
35dbj|AK106536.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.1
36dbj|AK073095.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.1
37gb|AC005542.1|AC005542 Homo sapiens chromosome 19, cosmid R32516... 40 7.1
38gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.1
39emb|BX897734.11| Zebrafish DNA sequence from clone CH211-194J14,... 40 7.1
40emb|AL928774.3|CNS08CC4 Oryza sativa chromosome 12, . BAC OSJNBa... 40 7.1
41dbj|AB011161.1| Homo sapiens mRNA for KIAA0589 protein, partial cds 40 7.1 
>ref|NM_196176.1| Oryza sativa (japonica cultivar-group) putative Tyrosine/DOPA
            decarboxylase 2 (OSJNBa0032N04.8), mRNA
          Length = 1581

 Score =  188 bits (95), Expect = 1e-44
 Identities = 158/179 (88%)
 Strand = Plus / Minus

                                                                        
Query: 255  agcccgatcctggaccaccttccatgcatcagcgacgtggtgctcctccgtgagcgtgct 314
            ||||||||||||||| |||||||| || ||   ||||||| ||||||| |||||||||||
Sbjct: 1545 agcccgatcctggacaaccttccaggcttcccggacgtggcgctcctcggtgagcgtgct 1486

                                                                        
Query: 315  cccgacggcgcacctgagcatgtagatgccacccacgttggcggagctcatgtacgggcc 374
             ||||||||||||||||||||||| | ||| || || |||||||||||||||||||| ||
Sbjct: 1485 gccgacggcgcacctgagcatgtacacgccgccgacattggcggagctcatgtacggtcc 1426

                                                                       
Query: 375  cgagccgaccgcgttcacctcctcgaggaggccccggttgagctcgttggccgtcttct 433
            ||||| | |||||||||||||||||||||| | || |||||||||||| ||||||||||
Sbjct: 1425 cgagctggccgcgttcacctcctcgaggagccgcctgttgagctcgttcgccgtcttct 1367



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 63/68 (92%)
 Strand = Plus / Minus

                                                                        
Query: 454  gaccggagcctgaagcacaccagcgcgaactgcctctccgtcaccacctcgaacctctcg 513
            |||||||||| ||||||||||||||||||| |||||  ||||||||||||||||||| ||
Sbjct: 1358 gaccggagccggaagcacaccagcgcgaaccgcctcggcgtcaccacctcgaacctcgcg 1299

                    
Query: 514  tcggccct 521
            ||||||||
Sbjct: 1298 tcggccct 1291
to top
>gb|AC114474.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0032N04, from chromosome 10, complete sequence
          Length = 159445

 Score =  188 bits (95), Expect = 1e-44
 Identities = 158/179 (88%)
 Strand = Plus / Plus

                                                                         
Query: 255   agcccgatcctggaccaccttccatgcatcagcgacgtggtgctcctccgtgagcgtgct 314
             ||||||||||||||| |||||||| || ||   ||||||| ||||||| |||||||||||
Sbjct: 62170 agcccgatcctggacaaccttccaggcttcccggacgtggcgctcctcggtgagcgtgct 62229

                                                                         
Query: 315   cccgacggcgcacctgagcatgtagatgccacccacgttggcggagctcatgtacgggcc 374
              ||||||||||||||||||||||| | ||| || || |||||||||||||||||||| ||
Sbjct: 62230 gccgacggcgcacctgagcatgtacacgccgccgacattggcggagctcatgtacggtcc 62289

                                                                        
Query: 375   cgagccgaccgcgttcacctcctcgaggaggccccggttgagctcgttggccgtcttct 433
             ||||| | |||||||||||||||||||||| | || |||||||||||| ||||||||||
Sbjct: 62290 cgagctggccgcgttcacctcctcgaggagccgcctgttgagctcgttcgccgtcttct 62348



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 63/68 (92%)
 Strand = Plus / Plus

                                                                         
Query: 454   gaccggagcctgaagcacaccagcgcgaactgcctctccgtcaccacctcgaacctctcg 513
             |||||||||| ||||||||||||||||||| |||||  ||||||||||||||||||| ||
Sbjct: 62357 gaccggagccggaagcacaccagcgcgaaccgcctcggcgtcaccacctcgaacctcgcg 62416

                     
Query: 514   tcggccct 521
             ||||||||
Sbjct: 62417 tcggccct 62424
to top
>gb|AC092748.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0019N10, from chromosome 10, complete sequence
          Length = 192267

 Score =  188 bits (95), Expect = 1e-44
 Identities = 158/179 (88%)
 Strand = Plus / Minus

                                                                          
Query: 255    agcccgatcctggaccaccttccatgcatcagcgacgtggtgctcctccgtgagcgtgct 314
              ||||||||||||||| |||||||| || ||   ||||||| ||||||| |||||||||||
Sbjct: 170210 agcccgatcctggacaaccttccaggcttcccggacgtggcgctcctcggtgagcgtgct 170151

                                                                          
Query: 315    cccgacggcgcacctgagcatgtagatgccacccacgttggcggagctcatgtacgggcc 374
               ||||||||||||||||||||||| | ||| || || |||||||||||||||||||| ||
Sbjct: 170150 gccgacggcgcacctgagcatgtacacgccgccgacattggcggagctcatgtacggtcc 170091

                                                                         
Query: 375    cgagccgaccgcgttcacctcctcgaggaggccccggttgagctcgttggccgtcttct 433
              ||||| | |||||||||||||||||||||| | || |||||||||||| ||||||||||
Sbjct: 170090 cgagctggccgcgttcacctcctcgaggagccgcctgttgagctcgttcgccgtcttct 170032



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 63/68 (92%)
 Strand = Plus / Minus

                                                                          
Query: 454    gaccggagcctgaagcacaccagcgcgaactgcctctccgtcaccacctcgaacctctcg 513
              |||||||||| ||||||||||||||||||| |||||  ||||||||||||||||||| ||
Sbjct: 170023 gaccggagccggaagcacaccagcgcgaaccgcctcggcgtcaccacctcgaacctcgcg 169964

                      
Query: 514    tcggccct 521
              ||||||||
Sbjct: 169963 tcggccct 169956
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  188 bits (95), Expect = 1e-44
 Identities = 158/179 (88%)
 Strand = Plus / Plus

                                                                            
Query: 255      agcccgatcctggaccaccttccatgcatcagcgacgtggtgctcctccgtgagcgtgct 314
                ||||||||||||||| |||||||| || ||   ||||||| ||||||| |||||||||||
Sbjct: 11744109 agcccgatcctggacaaccttccaggcttcccggacgtggcgctcctcggtgagcgtgct 11744168

                                                                            
Query: 315      cccgacggcgcacctgagcatgtagatgccacccacgttggcggagctcatgtacgggcc 374
                 ||||||||||||||||||||||| | ||| || || |||||||||||||||||||| ||
Sbjct: 11744169 gccgacggcgcacctgagcatgtacacgccgccgacattggcggagctcatgtacggtcc 11744228

                                                                           
Query: 375      cgagccgaccgcgttcacctcctcgaggaggccccggttgagctcgttggccgtcttct 433
                ||||| | |||||||||||||||||||||| | || |||||||||||| ||||||||||
Sbjct: 11744229 cgagctggccgcgttcacctcctcgaggagccgcctgttgagctcgttcgccgtcttct 11744287



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 63/68 (92%)
 Strand = Plus / Plus

                                                                            
Query: 454      gaccggagcctgaagcacaccagcgcgaactgcctctccgtcaccacctcgaacctctcg 513
                |||||||||| ||||||||||||||||||| |||||  ||||||||||||||||||| ||
Sbjct: 11744296 gaccggagccggaagcacaccagcgcgaaccgcctcggcgtcaccacctcgaacctcgcg 11744355

                        
Query: 514      tcggccct 521
                ||||||||
Sbjct: 11744356 tcggccct 11744363



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                           
Query: 465      gaagcacaccagcgcgaactgcctctccgtcaccacctcgaacctctcgtcggccctca 523
                ||||||||| || | ||||  ||||| || |||||||||||||| ||||||||| ||||
Sbjct: 13009329 gaagcacacgagggagaacctcctcttcgccaccacctcgaaccgctcgtcggcgctca 13009387
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  188 bits (95), Expect = 1e-44
 Identities = 158/179 (88%)
 Strand = Plus / Plus

                                                                            
Query: 255      agcccgatcctggaccaccttccatgcatcagcgacgtggtgctcctccgtgagcgtgct 314
                ||||||||||||||| |||||||| || ||   ||||||| ||||||| |||||||||||
Sbjct: 11751449 agcccgatcctggacaaccttccaggcttcccggacgtggcgctcctcggtgagcgtgct 11751508

                                                                            
Query: 315      cccgacggcgcacctgagcatgtagatgccacccacgttggcggagctcatgtacgggcc 374
                 ||||||||||||||||||||||| | ||| || || |||||||||||||||||||| ||
Sbjct: 11751509 gccgacggcgcacctgagcatgtacacgccgccgacattggcggagctcatgtacggtcc 11751568

                                                                           
Query: 375      cgagccgaccgcgttcacctcctcgaggaggccccggttgagctcgttggccgtcttct 433
                ||||| | |||||||||||||||||||||| | || |||||||||||| ||||||||||
Sbjct: 11751569 cgagctggccgcgttcacctcctcgaggagccgcctgttgagctcgttcgccgtcttct 11751627



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 63/68 (92%)
 Strand = Plus / Plus

                                                                            
Query: 454      gaccggagcctgaagcacaccagcgcgaactgcctctccgtcaccacctcgaacctctcg 513
                |||||||||| ||||||||||||||||||| |||||  ||||||||||||||||||| ||
Sbjct: 11751636 gaccggagccggaagcacaccagcgcgaaccgcctcggcgtcaccacctcgaacctcgcg 11751695

                        
Query: 514      tcggccct 521
                ||||||||
Sbjct: 11751696 tcggccct 11751703



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                           
Query: 465      gaagcacaccagcgcgaactgcctctccgtcaccacctcgaacctctcgtcggccctca 523
                ||||||||| || | ||||  ||||| || |||||||||||||| ||||||||| ||||
Sbjct: 13016669 gaagcacacgagggagaacctcctcttcgccaccacctcgaaccgctcgtcggcgctca 13016727
to top
>ref|NM_191411.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1602

 Score =  165 bits (83), Expect = 2e-37
 Identities = 161/187 (86%)
 Strand = Plus / Minus

                                                                        
Query: 256  gcccgatcctggaccaccttccatgcatcagcgacgtggtgctcctccgtgagcgtgctc 315
            ||||| |||||||| |||||||| || ||   ||| ||| ||||||| ||||||||||||
Sbjct: 1574 gcccgctcctggacaaccttccacgcttcgcggacatggcgctcctcggtgagcgtgctc 1515

                                                                        
Query: 316  ccgacggcgcacctgagcatgtagatgccacccacgttggcggagctcatgtacgggccc 375
            |||| |||||||||||||||||| | |||||||||  ||||||||||||||||||| |||
Sbjct: 1514 ccgatggcgcacctgagcatgtacacgccacccaccatggcggagctcatgtacggcccc 1455

                                                                        
Query: 376  gagccgaccgcgttcacctcctcgaggaggccccggttgagctcgttggccgtcttctcg 435
            ||||   |||||||||||||||| ||||| | || |||||||||||| |||| |||||||
Sbjct: 1454 gagctcgccgcgttcacctcctccaggagcctcctgttgagctcgtttgccgccttctcg 1395

                   
Query: 436  ccgccga 442
            || ||||
Sbjct: 1394 cctccga 1388



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 66/74 (89%)
 Strand = Plus / Minus

                                                                        
Query: 450  cggcgaccggagcctgaagcacaccagcgcgaactgcctctccgtcaccacctcgaacct 509
            |||||||||||| | ||||||||||||||||||| |||||  || |||||||||||||||
Sbjct: 1359 cggcgaccggaggcggaagcacaccagcgcgaaccgcctcggcgccaccacctcgaacct 1300

                          
Query: 510  ctcgtcggccctca 523
            | ||||| ||||||
Sbjct: 1299 cgcgtcgcccctca 1286
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  165 bits (83), Expect = 2e-37
 Identities = 161/187 (86%)
 Strand = Plus / Plus

                                                                            
Query: 256      gcccgatcctggaccaccttccatgcatcagcgacgtggtgctcctccgtgagcgtgctc 315
                ||||| |||||||| |||||||| || ||   ||| ||| ||||||| ||||||||||||
Sbjct: 32494519 gcccgctcctggacaaccttccacgcttcgcggacatggcgctcctcggtgagcgtgctc 32494578

                                                                            
Query: 316      ccgacggcgcacctgagcatgtagatgccacccacgttggcggagctcatgtacgggccc 375
                |||| |||||||||||||||||| | |||||||||  ||||||||||||||||||| |||
Sbjct: 32494579 ccgatggcgcacctgagcatgtacacgccacccaccatggcggagctcatgtacggcccc 32494638

                                                                            
Query: 376      gagccgaccgcgttcacctcctcgaggaggccccggttgagctcgttggccgtcttctcg 435
                ||||   |||||||||||||||| ||||| | || |||||||||||| |||| |||||||
Sbjct: 32494639 gagctcgccgcgttcacctcctccaggagcctcctgttgagctcgtttgccgccttctcg 32494698

                       
Query: 436      ccgccga 442
                || ||||
Sbjct: 32494699 cctccga 32494705



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 66/74 (89%)
 Strand = Plus / Plus

                                                                            
Query: 450      cggcgaccggagcctgaagcacaccagcgcgaactgcctctccgtcaccacctcgaacct 509
                |||||||||||| | ||||||||||||||||||| |||||  || |||||||||||||||
Sbjct: 32494734 cggcgaccggaggcggaagcacaccagcgcgaaccgcctcggcgccaccacctcgaacct 32494793

                              
Query: 510      ctcgtcggccctca 523
                | ||||| ||||||
Sbjct: 32494794 cgcgtcgcccctca 32494807
to top
>dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0665A11
          Length = 166421

 Score =  165 bits (83), Expect = 2e-37
 Identities = 161/187 (86%)
 Strand = Plus / Plus

                                                                         
Query: 256   gcccgatcctggaccaccttccatgcatcagcgacgtggtgctcctccgtgagcgtgctc 315
             ||||| |||||||| |||||||| || ||   ||| ||| ||||||| ||||||||||||
Sbjct: 82040 gcccgctcctggacaaccttccacgcttcgcggacatggcgctcctcggtgagcgtgctc 82099

                                                                         
Query: 316   ccgacggcgcacctgagcatgtagatgccacccacgttggcggagctcatgtacgggccc 375
             |||| |||||||||||||||||| | |||||||||  ||||||||||||||||||| |||
Sbjct: 82100 ccgatggcgcacctgagcatgtacacgccacccaccatggcggagctcatgtacggcccc 82159

                                                                         
Query: 376   gagccgaccgcgttcacctcctcgaggaggccccggttgagctcgttggccgtcttctcg 435
             ||||   |||||||||||||||| ||||| | || |||||||||||| |||| |||||||
Sbjct: 82160 gagctcgccgcgttcacctcctccaggagcctcctgttgagctcgtttgccgccttctcg 82219

                    
Query: 436   ccgccga 442
             || ||||
Sbjct: 82220 cctccga 82226



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 66/74 (89%)
 Strand = Plus / Plus

                                                                         
Query: 450   cggcgaccggagcctgaagcacaccagcgcgaactgcctctccgtcaccacctcgaacct 509
             |||||||||||| | ||||||||||||||||||| |||||  || |||||||||||||||
Sbjct: 82255 cggcgaccggaggcggaagcacaccagcgcgaaccgcctcggcgccaccacctcgaacct 82314

                           
Query: 510   ctcgtcggccctca 523
             | ||||| ||||||
Sbjct: 82315 cgcgtcgcccctca 82328
to top
>dbj|AB162137.1| Oryza sativa (japonica cultivar-group) TDC gene for tryptophan
            decarboxylase, complete cds
          Length = 1602

 Score =  165 bits (83), Expect = 2e-37
 Identities = 161/187 (86%)
 Strand = Plus / Minus

                                                                        
Query: 256  gcccgatcctggaccaccttccatgcatcagcgacgtggtgctcctccgtgagcgtgctc 315
            ||||| |||||||| |||||||| || ||   ||| ||| ||||||| ||||||||||||
Sbjct: 1574 gcccgctcctggacaaccttccacgcttcgcggacatggcgctcctcggtgagcgtgctc 1515

                                                                        
Query: 316  ccgacggcgcacctgagcatgtagatgccacccacgttggcggagctcatgtacgggccc 375
            |||| |||||||||||||||||| | |||||||||  ||||||||||||||||||| |||
Sbjct: 1514 ccgatggcgcacctgagcatgtacacgccacccaccatggcggagctcatgtacggcccc 1455

                                                                        
Query: 376  gagccgaccgcgttcacctcctcgaggaggccccggttgagctcgttggccgtcttctcg 435
            ||||   |||||||||||||||| ||||| | || |||||||||||| |||| |||||||
Sbjct: 1454 gagctcgccgcgttcacctcctccaggagcctcctgttgagctcgtttgccgccttctcg 1395

                   
Query: 436  ccgccga 442
            || ||||
Sbjct: 1394 cctccga 1388



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 66/74 (89%)
 Strand = Plus / Minus

                                                                        
Query: 450  cggcgaccggagcctgaagcacaccagcgcgaactgcctctccgtcaccacctcgaacct 509
            |||||||||||| | ||||||||||||||||||| |||||  || |||||||||||||||
Sbjct: 1359 cggcgaccggaggcggaagcacaccagcgcgaaccgcctcggcgccaccacctcgaacct 1300

                          
Query: 510  ctcgtcggccctca 523
            | ||||| ||||||
Sbjct: 1299 cgcgtcgcccctca 1286
to top
>dbj|AK065830.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013041D01, full
            insert sequence
          Length = 1922

 Score =  165 bits (83), Expect = 2e-37
 Identities = 161/187 (86%)
 Strand = Plus / Minus

                                                                        
Query: 256  gcccgatcctggaccaccttccatgcatcagcgacgtggtgctcctccgtgagcgtgctc 315
            ||||| |||||||| |||||||| || ||   ||| ||| ||||||| ||||||||||||
Sbjct: 1697 gcccgctcctggacaaccttccacgcttcgcggacatggcgctcctcggtgagcgtgctc 1638

                                                                        
Query: 316  ccgacggcgcacctgagcatgtagatgccacccacgttggcggagctcatgtacgggccc 375
            |||| |||||||||||||||||| | |||||||||  ||||||||||||||||||| |||
Sbjct: 1637 ccgatggcgcacctgagcatgtacacgccacccaccatggcggagctcatgtacggcccc 1578

                                                                        
Query: 376  gagccgaccgcgttcacctcctcgaggaggccccggttgagctcgttggccgtcttctcg 435
            ||||   |||||||||||||||| ||||| | || |||||||||||| |||| |||||||
Sbjct: 1577 gagctcgccgcgttcacctcctccaggagcctcctgttgagctcgtttgccgccttctcg 1518

                   
Query: 436  ccgccga 442
            || ||||
Sbjct: 1517 cctccga 1511



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 66/74 (89%)
 Strand = Plus / Minus

                                                                        
Query: 450  cggcgaccggagcctgaagcacaccagcgcgaactgcctctccgtcaccacctcgaacct 509
            |||||||||||| | ||||||||||||||||||| |||||  || |||||||||||||||
Sbjct: 1482 cggcgaccggaggcggaagcacaccagcgcgaaccgcctcggcgccaccacctcgaacct 1423

                          
Query: 510  ctcgtcggccctca 523
            | ||||| ||||||
Sbjct: 1422 cgcgtcgcccctca 1409
to top
>gb|AY111785.1| Zea mays CL244_1 mRNA sequence
          Length = 1880

 Score =  101 bits (51), Expect = 2e-18
 Identities = 159/195 (81%)
 Strand = Plus / Minus

                                                                        
Query: 296  gctcctccgtgagcgtgctcccgacggcgcacctgagcatgtagatgccacccacgttgg 355
            |||||||||| |||||||||||||  ||||| ||||||||||||| |||||| || || |
Sbjct: 1681 gctcctccgtaagcgtgctcccgatagcgcatctgagcatgtagacgccaccgacattag 1622

                                                                        
Query: 356  cggagctcatgtacgggcccgagccgaccgcgttcacctcctcgaggaggccccggttga 415
            | || |||||||| || || ||||   |||| ||||||||||| ||||| |  | |||||
Sbjct: 1621 cagaactcatgtagggcccagagcaagccgcattcacctcctctaggagccttctgttga 1562

                                                                        
Query: 416  gctcgttggccgtcttctcgccgccgaacttctccggcgaccggagcctgaagcacacca 475
            || ||||||||| |||   |||||| |||| ||| |||| ||||||||| ||||| || |
Sbjct: 1561 gcgcgttggccgccttggggccgcccaactcctcgggcgcccggagcctaaagcaaacga 1502

                           
Query: 476  gcgcgaactgcctct 490
            | ||||| |||||||
Sbjct: 1501 gtgcgaattgcctct 1487
to top
>ref|XM_475687.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1698

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 111/136 (81%), Gaps = 3/136 (2%)
 Strand = Plus / Minus

                                                                        
Query: 288  gacgtggtgctcctccgtgagcgtgctcccgacggcgcacctgagcatgtagatgccacc 347
            ||||||||||||||| ||||||| | | ||||||||||| |  |||| ||| ||||| ||
Sbjct: 1518 gacgtggtgctcctcggtgagcgagttgccgacggcgcagcgcagcacgtacatgccgcc 1459

                                                                        
Query: 348  cacgttggcggagctcatgtacgggcccgagccgaccgcgttcacctcctcgaggaggcc 407
            |||   ||||||||||||||||| || |   ||   |||||||||| |||||||||| | 
Sbjct: 1458 caccacggcggagctcatgtacgcgcgc---cccgtcgcgttcaccgcctcgaggagcct 1402

                            
Query: 408  ccggttgagctcgttg 423
            || |||||||||||||
Sbjct: 1401 cctgttgagctcgttg 1386



 Score = 44.1 bits (22), Expect = 0.45
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 460  agcctgaagcacaccagcgcgaactgcctc 489
            |||| |||||| ||||||||||||||||||
Sbjct: 1331 agccggaagcagaccagcgcgaactgcctc 1302
to top
>gb|AC108873.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1005_B11,
             complete sequence
          Length = 162772

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 111/136 (81%), Gaps = 3/136 (2%)
 Strand = Plus / Plus

                                                                         
Query: 288   gacgtggtgctcctccgtgagcgtgctcccgacggcgcacctgagcatgtagatgccacc 347
             ||||||||||||||| ||||||| | | ||||||||||| |  |||| ||| ||||| ||
Sbjct: 33777 gacgtggtgctcctcggtgagcgagttgccgacggcgcagcgcagcacgtacatgccgcc 33836

                                                                         
Query: 348   cacgttggcggagctcatgtacgggcccgagccgaccgcgttcacctcctcgaggaggcc 407
             |||   ||||||||||||||||| || |   ||   |||||||||| |||||||||| | 
Sbjct: 33837 caccacggcggagctcatgtacgcgcgc---cccgtcgcgttcaccgcctcgaggagcct 33893

                             
Query: 408   ccggttgagctcgttg 423
             || |||||||||||||
Sbjct: 33894 cctgttgagctcgttg 33909



 Score = 44.1 bits (22), Expect = 0.45
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 460   agcctgaagcacaccagcgcgaactgcctc 489
             |||| |||||| ||||||||||||||||||
Sbjct: 33964 agccggaagcagaccagcgcgaactgcctc 33993
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 111/136 (81%), Gaps = 3/136 (2%)
 Strand = Plus / Plus

                                                                            
Query: 288      gacgtggtgctcctccgtgagcgtgctcccgacggcgcacctgagcatgtagatgccacc 347
                ||||||||||||||| ||||||| | | ||||||||||| |  |||| ||| ||||| ||
Sbjct: 25091122 gacgtggtgctcctcggtgagcgagttgccgacggcgcagcgcagcacgtacatgccgcc 25091181

                                                                            
Query: 348      cacgttggcggagctcatgtacgggcccgagccgaccgcgttcacctcctcgaggaggcc 407
                |||   ||||||||||||||||| || |   ||   |||||||||| |||||||||| | 
Sbjct: 25091182 caccacggcggagctcatgtacgcgcgc---cccgtcgcgttcaccgcctcgaggagcct 25091238

                                
Query: 408      ccggttgagctcgttg 423
                || |||||||||||||
Sbjct: 25091239 cctgttgagctcgttg 25091254



 Score = 44.1 bits (22), Expect = 0.45
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                              
Query: 460      agcctgaagcacaccagcgcgaactgcctc 489
                |||| |||||| ||||||||||||||||||
Sbjct: 25091309 agccggaagcagaccagcgcgaactgcctc 25091338
to top
>emb|AL390243.22| Human DNA sequence from clone RP6-102O10 on chromosome 1p32.1-33
             Contains a novel gene, complete sequence
          Length = 84595

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                              
Query: 28    tacttaaaacacatataaatatcaaatacagat 60
             |||||| |||||||||||||| |||||||||||
Sbjct: 12539 tacttacaacacatataaataacaaatacagat 12507
to top
>ref|NM_196380.1| Oryza sativa (japonica cultivar-group) putative tyrosine/dopa
            decarboxylase (OSJNBa0050N08.21), mRNA
          Length = 1509

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                       
Query: 465  gaagcacaccagcgcgaactgcctctccgtcaccacctcgaacctctcgtcggccctca 523
            ||||||||| || | ||||  ||||| || |||||||||||||| ||||||||| ||||
Sbjct: 1293 gaagcacacgagggagaacctcctcttcgccaccacctcgaaccgctcgtcggcgctca 1235
to top
>gb|AC021891.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0050N08,
              complete sequence
          Length = 144593

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                         
Query: 465    gaagcacaccagcgcgaactgcctctccgtcaccacctcgaacctctcgtcggccctca 523
              ||||||||| || | ||||  ||||| || |||||||||||||| ||||||||| ||||
Sbjct: 108245 gaagcacacgagggagaacctcctcttcgccaccacctcgaaccgctcgtcggcgctca 108303
to top
>gb|AF078790.1| Caenorhabditis elegans cosmid F36H12, complete sequence
          Length = 43907

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 19    cttactttttacttaaaacaca 40
             ||||||||||||||||||||||
Sbjct: 19427 cttactttttacttaaaacaca 19406
to top
>emb|AL590365.14| Human DNA sequence from clone RP11-455B2 on chromosome 10 Contains the
              gene for a novel thioesterase domain containing protein
              (FLJ11106), the gene for ribonuclease P (38kD) (RPP38), the
              gene for a novel protein (FLJ38219), the gene for a novel
              protein, the NMT2 gene for N-myristoyltransferase 2, the 3'
              end of the gene for a novel protein (LOC221061), a novel
              gene, a pseudogene similar to part of
              glyceraldehyde-3-phosphate dehydrogenase
              (GAPD)(G3PD,GAPDH), a peptidylprolyl isomerase A
              (cyclophilin A) (PPIA)(CYPA,CYPH) pseudogene, a NADH
              dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa
              (NDUFA4)(MLRQ) pseudogene and three CpG islands, complete
              sequence
          Length = 194802

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 40     atataaatatcaaatacagat 60
              |||||||||||||||||||||
Sbjct: 125066 atataaatatcaaatacagat 125046
to top
>gb|AC021549.9| Homo sapiens chromosome 18, clone RP11-650P15, complete sequence
          Length = 183066

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 43    taaatatcaaatacagatcat 63
             |||||||||||||||||||||
Sbjct: 87703 taaatatcaaatacagatcat 87683
to top
>ref|NM_012398.1| Homo sapiens phosphatidylinositol-4-phosphate 5-kinase, type I, gamma
            (PIP5K1C), mRNA
          Length = 5047

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 341  tgccacccacgttggcggagctca 364
            ||||||||||| ||||||||||||
Sbjct: 2805 tgccacccacgctggcggagctca 2828
to top
>gb|AC124807.11| Mus musculus chromosome 3, clone RP23-137I13, complete sequence
          Length = 213113

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    tacttaaaacacatataaat 47
             ||||||||||||||||||||
Sbjct: 49506 tacttaaaacacatataaat 49487
to top
>ref|XM_752556.1| Ustilago maydis 521 hypothetical protein (UM01502.1) partial mRNA
          Length = 3798

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 375  cgagccgaccgcgttcacct 394
            ||||||||||||||||||||
Sbjct: 1872 cgagccgaccgcgttcacct 1853
to top
>gb|BC004149.2| Homo sapiens phosphatidylinositol-4-phosphate 5-kinase, type I,
           gamma, mRNA (cDNA clone IMAGE:2819393), partial cds
          Length = 2297

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 341 tgccacccacgttggcggagctca 364
           ||||||||||| ||||||||||||
Sbjct: 23  tgccacccacgctggcggagctca 46
to top
>emb|AL138712.19| Human DNA sequence from clone RP11-502P18 on chromosome 13 Contains 3'
              end of novel gene similar to Drosophila CG11486,  and the
              3' end of the FLT1 gene for fms-related tyrosine kinase 1
              (vascular endothelial growth factor/vascular permeability
              factor receptor), complete sequence
          Length = 164519

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 85     attacaaatcctcgtggttc 104
              ||||||||||||||||||||
Sbjct: 102400 attacaaatcctcgtggttc 102419
to top
>gb|AC111678.6| Rattus norvegicus 18 BAC CH230-60A14 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 146568

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 23     ctttttacttaaaacacata 42
              ||||||||||||||||||||
Sbjct: 108359 ctttttacttaaaacacata 108378
to top
>emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete genome; segment 6/16
          Length = 349876

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 464    tgaagcacaccagcgcgaac 483
              ||||||||||||||||||||
Sbjct: 267349 tgaagcacaccagcgcgaac 267368
to top
>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14
          Length = 348014

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 464    tgaagcacaccagcgcgaac 483
              ||||||||||||||||||||
Sbjct: 178817 tgaagcacaccagcgcgaac 178836
to top
>emb|BX640417.1| Bordetella pertussis strain Tohama I, complete genome; segment 7/12
          Length = 348934

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 464    tgaagcacaccagcgcgaac 483
              ||||||||||||||||||||
Sbjct: 328735 tgaagcacaccagcgcgaac 328716
to top
>gb|AC114147.5| Rattus norvegicus  BAC CH230-144F3 (Children's Hospital Oakland
             Research Institute Rat (BN/SsNHsd/MCW) BAC library)
             complete sequence
          Length = 214988

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    ctttttacttaaaacacata 42
             ||||||||||||||||||||
Sbjct: 66077 ctttttacttaaaacacata 66096
to top
>gb|AE005705.1| Caulobacter crescentus CB15 section 31 of 359 of the complete genome
          Length = 11217

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 429  cttctcgccgccgaacttct 448
            ||||||||||||||||||||
Sbjct: 8478 cttctcgccgccgaacttct 8497
to top
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 430     ttctcgccgccgaacttctccggc 453
               ||||||||||||| ||||||||||
Sbjct: 2995308 ttctcgccgccgatcttctccggc 2995331
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 423      ggccgtcttctcgccgccga 442
                ||||||||||||||||||||
Sbjct: 23994241 ggccgtcttctcgccgccga 23994260
to top
>emb|BX000696.19| Zebrafish DNA sequence from clone CH211-107E16 in linkage group 11,
             complete sequence
          Length = 154744

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 471   caccagcgcgaactgcctct 490
             ||||||||||||||||||||
Sbjct: 92204 caccagcgcgaactgcctct 92185
to top
>dbj|AK106536.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-C04, full
           insert sequence
          Length = 2377

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 423 ggccgtcttctcgccgccga 442
           ||||||||||||||||||||
Sbjct: 68  ggccgtcttctcgccgccga 87
to top
>dbj|AK073095.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033005D09, full
           insert sequence
          Length = 2346

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 423 ggccgtcttctcgccgccga 442
           ||||||||||||||||||||
Sbjct: 69  ggccgtcttctcgccgccga 88
to top
>gb|AC005542.1|AC005542 Homo sapiens chromosome 19, cosmid R32516, complete sequence
          Length = 38209

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 341   tgccacccacgttggcggagctca 364
             ||||||||||| ||||||||||||
Sbjct: 16040 tgccacccacgctggcggagctca 16017
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 423      ggccgtcttctcgccgccga 442
                ||||||||||||||||||||
Sbjct: 23922447 ggccgtcttctcgccgccga 23922466
to top
>emb|BX897734.11| Zebrafish DNA sequence from clone CH211-194J14, complete sequence
          Length = 151729

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 23     ctttttacttaaaacacatataaatatc 50
              ||||||| |||||||| |||||||||||
Sbjct: 131490 ctttttaattaaaacaaatataaatatc 131517
to top
>emb|AL928774.3|CNS08CC4 Oryza sativa chromosome 12, . BAC OSJNBa0078O17 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 176388

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 423   ggccgtcttctcgccgccga 442
             ||||||||||||||||||||
Sbjct: 93155 ggccgtcttctcgccgccga 93136
to top
>dbj|AB011161.1| Homo sapiens mRNA for KIAA0589 protein, partial cds
          Length = 5047

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 341  tgccacccacgttggcggagctca 364
            ||||||||||| ||||||||||||
Sbjct: 2805 tgccacccacgctggcggagctca 2828


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,445,061
Number of Sequences: 3902068
Number of extensions: 4445061
Number of successful extensions: 89687
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89335
Number of HSP's gapped (non-prelim): 352
length of query: 523
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 500
effective length of database: 17,143,297,704
effective search space: 8571648852000
effective search space used: 8571648852000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top