ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart28e04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY108935.1| Zea mays PCO091688 mRNA sequence Length = 1084 Score = 281 bits (142), Expect = 1e-72 Identities = 262/302 (86%) Strand = Plus / Minus Query: 194 gcgatctgtacgttttcgacgtcgagctttttgaagttgctgttcttcctggtgctgaag 253 |||||||| | ||| || |||| |||||| |||||||||||||||||||||||||||||| Sbjct: 820 gcgatctgaatgttctccacgttgagcttcttgaagttgctgttcttcctggtgctgaag 761 Query: 254 aagtggccccagttgtaggcgtcgtacctggcgggcctctcgtcgctcaccatctcctcc 313 |||| |||||||||||||||||||||||||| || || | |||||||| ||||||| Sbjct: 760 aagtcgccccagttgtaggcgtcgtacctgggcggatcgtccttgctcaccagctcctcc 701 Query: 314 aacggctcgaccatggcgtcgctgccggggttgaagaagtagggcatggagaacctctcc 373 | |||||| ||||||| || | | | ||||||||||||||||||||||||||||||||| Sbjct: 700 accggctccaccatggtgtaggtcgccgggttgaagaagtagggcatggagaacctctcc 641 Query: 374 ttgtccgagttgacggacaccctgtgctcggcgctctcgtacctgtcgttgctccacacc 433 | ||||||| || ||||||| |||||| |||||||||||||||||||||||||||||| Sbjct: 640 ctcgccgagttcaccgacacccggtgctccgcgctctcgtacctgtcgttgctccacacc 581 Query: 434 tggatgatgtcgccgacgttaatgacgtaggagtccgggacgggcctaacgcgcacccac 493 ||||||| |||||||||||| |||| | | ||||| || |||||||| ||||| |||||| Sbjct: 580 tggatgaggtcgccgacgttgatgatgaacgagtcgggcacgggcctgacgcggacccac 521 Query: 494 tc 495 || Sbjct: 520 tc 519
>dbj|AK073307.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033026A10, full insert sequence Length = 1337 Score = 278 bits (140), Expect = 2e-71 Identities = 260/300 (86%) Strand = Plus / Minus Query: 196 gatctgtacgttttcgacgtcgagctttttgaagttgctgttcttcctggtgctgaagaa 255 |||||| ||||| || ||||| ||||| |||||||||||||||||||||||||||||||| Sbjct: 1104 gatctggacgttctccacgtccagcttcttgaagttgctgttcttcctggtgctgaagaa 1045 Query: 256 gtggccccagttgtaggcgtcgtacctggcgggcctctcgtcgctcaccatctcctccaa 315 | |||||||||||||| || ||||||||| || |||||||||||||| | |||||||| Sbjct: 1044 ttcgccccagttgtaggggttgtacctggccgggctctcgtcgctcacgacctcctccag 985 Query: 316 cggctcgaccatggcgtcgctgccggggttgaagaagtagggcatggagaacctctcctt 375 ||||| ||||||| || || | |||||||||||| | || ||||||||||||||||| Sbjct: 984 tggctccaccatggtgtggcccgccgggttgaagaagaaagggatggagaacctctcctt 925 Query: 376 gtccgagttgacggacaccctgtgctcggcgctctcgtacctgtcgttgctccacacctg 435 ||| ||| || | ||||| |||||| ||||||||||||||||| |||||||||||||| Sbjct: 924 ctccacgttcaccgccacccggtgctccgcgctctcgtacctgtcattgctccacacctg 865 Query: 436 gatgatgtcgccgacgttaatgacgtaggagtccgggacgggcctaacgcgcacccactc 495 |||||||||||||||||| |||| | |||||| ||||||||||| |||||||||||||| Sbjct: 864 gatgatgtcgccgacgttgatgatgaaggagtgagggacgggcctgacgcgcacccactc 805
>dbj|AK063917.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-B03, full insert sequence Length = 1449 Score = 278 bits (140), Expect = 2e-71 Identities = 260/300 (86%) Strand = Plus / Minus Query: 196 gatctgtacgttttcgacgtcgagctttttgaagttgctgttcttcctggtgctgaagaa 255 |||||| ||||| || ||||| ||||| |||||||||||||||||||||||||||||||| Sbjct: 1210 gatctggacgttctccacgtccagcttcttgaagttgctgttcttcctggtgctgaagaa 1151 Query: 256 gtggccccagttgtaggcgtcgtacctggcgggcctctcgtcgctcaccatctcctccaa 315 | |||||||||||||| || ||||||||| || |||||||||||||| | |||||||| Sbjct: 1150 ttcgccccagttgtaggggttgtacctggccgggctctcgtcgctcacgacctcctccag 1091 Query: 316 cggctcgaccatggcgtcgctgccggggttgaagaagtagggcatggagaacctctcctt 375 ||||| ||||||| || || | |||||||||||| | || ||||||||||||||||| Sbjct: 1090 tggctccaccatggtgtggcccgccgggttgaagaagaaagggatggagaacctctcctt 1031 Query: 376 gtccgagttgacggacaccctgtgctcggcgctctcgtacctgtcgttgctccacacctg 435 ||| ||| || | ||||| |||||| ||||||||||||||||| |||||||||||||| Sbjct: 1030 ctccacgttcaccgccacccggtgctccgcgctctcgtacctgtcattgctccacacctg 971 Query: 436 gatgatgtcgccgacgttaatgacgtaggagtccgggacgggcctaacgcgcacccactc 495 |||||||||||||||||| |||| | |||||| ||||||||||| |||||||||||||| Sbjct: 970 gatgatgtcgccgacgttgatgatgaaggagtgagggacgggcctgacgcgcacccactc 911
>ref|XM_480999.1| Oryza sativa (japonica cultivar-group), mRNA Length = 939 Score = 212 bits (107), Expect = 8e-52 Identities = 260/311 (83%) Strand = Plus / Minus Query: 185 ctgaagtgtgcgatctgtacgttttcgacgtcgagctttttgaagttgctgttcttcctg 244 ||||| || |||||||| | ||| || ||||| ||||| ||||||| || ||||||||| Sbjct: 911 ctgaaatgcgcgatctggatgttgtccacgtccagcttcttgaagtcgccattcttcctg 852 Query: 245 gtgctgaagaagtggccccagttgtaggcgtcgtacctggcgggcctctcgtcgctcacc 304 ||||||||||| | ||||||| ||||| | ||||||||| || ||||| || ||||| Sbjct: 851 gtgctgaagaattcgccccagcagtagggattgtacctggccgggctctcctcactcacg 792 Query: 305 atctcctccaacggctcgaccatggcgtcgctgccggggttgaagaagtagggcatggag 364 ||||||||||| ||||| ||||||| || ||| | |||| ||||||| | ||||||||| Sbjct: 791 atctcctccaatggctccaccatggtgtagctcgccgggtagaagaagaatggcatggag 732 Query: 365 aacctctccttgtccgagttgacggacaccctgtgctcggcgctctcgtacctgtcgttg 424 ||||||||||| ||| ||| | | ||||| |||||| ||||||||||||||||| ||| Sbjct: 731 aacctctccttctccacgttcatcgccacccggtgctccgcgctctcgtacctgtcattg 672 Query: 425 ctccacacctggatgatgtcgccgacgttaatgacgtaggagtccgggacgggcctaacg 484 |||||||||||||||||||||||||||||||||| | |||| | |||| ||||| ||| Sbjct: 671 ctccacacctggatgatgtcgccgacgttaatgatgaaggactgagggataggcctgacg 612 Query: 485 cgcacccactc 495 ||||||||||| Sbjct: 611 cgcacccactc 601
>gb|AC107206.4| Oryza sativa chromosome 3 BAC OSJNBa0063J18 genomic sequence, complete sequence Length = 154558 Score = 210 bits (106), Expect = 3e-51 Identities = 208/242 (85%) Strand = Plus / Plus Query: 196 gatctgtacgttttcgacgtcgagctttttgaagttgctgttcttcctggtgctgaagaa 255 |||||| ||||| || ||||| ||||| |||||||||||||||||||||||||||||||| Sbjct: 94441 gatctggacgttctccacgtccagcttcttgaagttgctgttcttcctggtgctgaagaa 94500 Query: 256 gtggccccagttgtaggcgtcgtacctggcgggcctctcgtcgctcaccatctcctccaa 315 | |||||||||||||| || ||||||||| || |||||||||||||| | |||||||| Sbjct: 94501 ttcgccccagttgtaggggttgtacctggccgggctctcgtcgctcacgacctcctccag 94560 Query: 316 cggctcgaccatggcgtcgctgccggggttgaagaagtagggcatggagaacctctcctt 375 ||||| ||||||| || || | |||||||||||| | || ||||||||||||||||| Sbjct: 94561 tggctccaccatggtgtggcccgccgggttgaagaagaaagggatggagaacctctcctt 94620 Query: 376 gtccgagttgacggacaccctgtgctcggcgctctcgtacctgtcgttgctccacacctg 435 ||| ||| || | ||||| |||||| ||||||||||||||||| |||||||||||||| Sbjct: 94621 ctccacgttcaccgccacccggtgctccgcgctctcgtacctgtcattgctccacacctg 94680 Query: 436 ga 437 || Sbjct: 94681 ga 94682 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Plus Query: 431 acctggatgatgtcgccgacgttaatgacgtaggagtccgggacgggcctaacgcgcacc 490 ||||||||||||||||||||||| |||| | |||||| ||||||||||| ||||||||| Sbjct: 95247 acctggatgatgtcgccgacgttgatgatgaaggagtgagggacgggcctgacgcgcacc 95306 Query: 491 cactc 495 ||||| Sbjct: 95307 cactc 95311
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 210 bits (106), Expect = 3e-51 Identities = 208/242 (85%) Strand = Plus / Plus Query: 196 gatctgtacgttttcgacgtcgagctttttgaagttgctgttcttcctggtgctgaagaa 255 |||||| ||||| || ||||| ||||| |||||||||||||||||||||||||||||||| Sbjct: 23257960 gatctggacgttctccacgtccagcttcttgaagttgctgttcttcctggtgctgaagaa 23258019 Query: 256 gtggccccagttgtaggcgtcgtacctggcgggcctctcgtcgctcaccatctcctccaa 315 | |||||||||||||| || ||||||||| || |||||||||||||| | |||||||| Sbjct: 23258020 ttcgccccagttgtaggggttgtacctggccgggctctcgtcgctcacgacctcctccag 23258079 Query: 316 cggctcgaccatggcgtcgctgccggggttgaagaagtagggcatggagaacctctcctt 375 ||||| ||||||| || || | |||||||||||| | || ||||||||||||||||| Sbjct: 23258080 tggctccaccatggtgtggcccgccgggttgaagaagaaagggatggagaacctctcctt 23258139 Query: 376 gtccgagttgacggacaccctgtgctcggcgctctcgtacctgtcgttgctccacacctg 435 ||| ||| || | ||||| |||||| ||||||||||||||||| |||||||||||||| Sbjct: 23258140 ctccacgttcaccgccacccggtgctccgcgctctcgtacctgtcattgctccacacctg 23258199 Query: 436 ga 437 || Sbjct: 23258200 ga 23258201 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Plus Query: 431 acctggatgatgtcgccgacgttaatgacgtaggagtccgggacgggcctaacgcgcacc 490 ||||||||||||||||||||||| |||| | |||||| ||||||||||| ||||||||| Sbjct: 23258766 acctggatgatgtcgccgacgttgatgatgaaggagtgagggacgggcctgacgcgcacc 23258825 Query: 491 cactc 495 ||||| Sbjct: 23258826 cactc 23258830
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 210 bits (106), Expect = 3e-51 Identities = 208/242 (85%) Strand = Plus / Plus Query: 196 gatctgtacgttttcgacgtcgagctttttgaagttgctgttcttcctggtgctgaagaa 255 |||||| ||||| || ||||| ||||| |||||||||||||||||||||||||||||||| Sbjct: 23250988 gatctggacgttctccacgtccagcttcttgaagttgctgttcttcctggtgctgaagaa 23251047 Query: 256 gtggccccagttgtaggcgtcgtacctggcgggcctctcgtcgctcaccatctcctccaa 315 | |||||||||||||| || ||||||||| || |||||||||||||| | |||||||| Sbjct: 23251048 ttcgccccagttgtaggggttgtacctggccgggctctcgtcgctcacgacctcctccag 23251107 Query: 316 cggctcgaccatggcgtcgctgccggggttgaagaagtagggcatggagaacctctcctt 375 ||||| ||||||| || || | |||||||||||| | || ||||||||||||||||| Sbjct: 23251108 tggctccaccatggtgtggcccgccgggttgaagaagaaagggatggagaacctctcctt 23251167 Query: 376 gtccgagttgacggacaccctgtgctcggcgctctcgtacctgtcgttgctccacacctg 435 ||| ||| || | ||||| |||||| ||||||||||||||||| |||||||||||||| Sbjct: 23251168 ctccacgttcaccgccacccggtgctccgcgctctcgtacctgtcattgctccacacctg 23251227 Query: 436 ga 437 || Sbjct: 23251228 ga 23251229 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Plus Query: 431 acctggatgatgtcgccgacgttaatgacgtaggagtccgggacgggcctaacgcgcacc 490 ||||||||||||||||||||||| |||| | |||||| ||||||||||| ||||||||| Sbjct: 23251794 acctggatgatgtcgccgacgttgatgatgaaggagtgagggacgggcctgacgcgcacc 23251853 Query: 491 cactc 495 ||||| Sbjct: 23251854 cactc 23251858
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 159 bits (80), Expect = 1e-35 Identities = 209/252 (82%) Strand = Plus / Plus Query: 185 ctgaagtgtgcgatctgtacgttttcgacgtcgagctttttgaagttgctgttcttcctg 244 ||||| || |||||||| | ||| || ||||| ||||| ||||||| || ||||||||| Sbjct: 9159653 ctgaaatgcgcgatctggatgttgtccacgtccagcttcttgaagtcgccattcttcctg 9159712 Query: 245 gtgctgaagaagtggccccagttgtaggcgtcgtacctggcgggcctctcgtcgctcacc 304 ||||||||||| | ||||||| ||||| | ||||||||| || ||||| || ||||| Sbjct: 9159713 gtgctgaagaattcgccccagcagtagggattgtacctggccgggctctcctcactcacg 9159772 Query: 305 atctcctccaacggctcgaccatggcgtcgctgccggggttgaagaagtagggcatggag 364 ||||||||||| ||||| ||||||| || ||| | |||| ||||||| | ||||||||| Sbjct: 9159773 atctcctccaatggctccaccatggtgtagctcgccgggtagaagaagaatggcatggag 9159832 Query: 365 aacctctccttgtccgagttgacggacaccctgtgctcggcgctctcgtacctgtcgttg 424 ||||||||||| ||| ||| | | ||||| |||||| ||||||||||||||||| ||| Sbjct: 9159833 aacctctccttctccacgttcatcgccacccggtgctccgcgctctcgtacctgtcattg 9159892 Query: 425 ctccacacctgg 436 |||||||||||| Sbjct: 9159893 ctccacacctgg 9159904 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 431 acctggatgatgtcgccgacgttaatgacgtaggagtccgggacgggcctaacgcgcacc 490 |||||||||||||||||||||||||||| | |||| | |||| ||||| ||||||||| Sbjct: 9160264 acctggatgatgtcgccgacgttaatgatgaaggactgagggataggcctgacgcgcacc 9160323 Query: 491 cactc 495 ||||| Sbjct: 9160324 cactc 9160328
>dbj|AP005799.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0012K14 Length = 155544 Score = 159 bits (80), Expect = 1e-35 Identities = 209/252 (82%) Strand = Plus / Plus Query: 185 ctgaagtgtgcgatctgtacgttttcgacgtcgagctttttgaagttgctgttcttcctg 244 ||||| || |||||||| | ||| || ||||| ||||| ||||||| || ||||||||| Sbjct: 95147 ctgaaatgcgcgatctggatgttgtccacgtccagcttcttgaagtcgccattcttcctg 95206 Query: 245 gtgctgaagaagtggccccagttgtaggcgtcgtacctggcgggcctctcgtcgctcacc 304 ||||||||||| | ||||||| ||||| | ||||||||| || ||||| || ||||| Sbjct: 95207 gtgctgaagaattcgccccagcagtagggattgtacctggccgggctctcctcactcacg 95266 Query: 305 atctcctccaacggctcgaccatggcgtcgctgccggggttgaagaagtagggcatggag 364 ||||||||||| ||||| ||||||| || ||| | |||| ||||||| | ||||||||| Sbjct: 95267 atctcctccaatggctccaccatggtgtagctcgccgggtagaagaagaatggcatggag 95326 Query: 365 aacctctccttgtccgagttgacggacaccctgtgctcggcgctctcgtacctgtcgttg 424 ||||||||||| ||| ||| | | ||||| |||||| ||||||||||||||||| ||| Sbjct: 95327 aacctctccttctccacgttcatcgccacccggtgctccgcgctctcgtacctgtcattg 95386 Query: 425 ctccacacctgg 436 |||||||||||| Sbjct: 95387 ctccacacctgg 95398 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 431 acctggatgatgtcgccgacgttaatgacgtaggagtccgggacgggcctaacgcgcacc 490 |||||||||||||||||||||||||||| | |||| | |||| ||||| ||||||||| Sbjct: 95758 acctggatgatgtcgccgacgttaatgatgaaggactgagggataggcctgacgcgcacc 95817 Query: 491 cactc 495 ||||| Sbjct: 95818 cactc 95822
>dbj|AK059045.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-D08, full insert sequence Length = 1741 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Minus Query: 391 caccctgtgctcggcgctctcgtacctgtcgttgctccacacctg 435 |||||||||||| |||||| |||||||| |||||||||| |||| Sbjct: 989 caccctgtgctccacgctcttgtacctgttgttgctccacgcctg 945
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 48.1 bits (24), Expect = 0.027 Identities = 36/40 (90%) Strand = Plus / Plus Query: 391 caccctgtgctcggcgctctcgtacctgtcgttgctccac 430 |||||||||||| |||||| |||||||| |||||||||| Sbjct: 25218445 caccctgtgctccacgctcttgtacctgttgttgctccac 25218484
>dbj|AP006168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1469H02 Length = 136602 Score = 48.1 bits (24), Expect = 0.027 Identities = 36/40 (90%) Strand = Plus / Plus Query: 391 caccctgtgctcggcgctctcgtacctgtcgttgctccac 430 |||||||||||| |||||| |||||||| |||||||||| Sbjct: 118838 caccctgtgctccacgctcttgtacctgttgttgctccac 118877
>dbj|AK072410.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083A20, full insert sequence Length = 2655 Score = 48.1 bits (24), Expect = 0.027 Identities = 36/40 (90%) Strand = Plus / Minus Query: 391 caccctgtgctcggcgctctcgtacctgtcgttgctccac 430 |||||||||||| |||||| |||||||| |||||||||| Sbjct: 2208 caccctgtgctccacgctcttgtacctgttgttgctccac 2169
>ref|XM_476364.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1077 Score = 46.1 bits (23), Expect = 0.11 Identities = 53/63 (84%) Strand = Plus / Plus Query: 391 caccctgtgctcggcgctctcgtacctgtcgttgctccacacctggatgatgtcgccgac 450 |||||||||||| |||||| |||| |||||||||||| |||| | || ||||||||| Sbjct: 221 caccctgtgctccacgctcttgtacacatcgttgctccacgcctgcaggaggtcgccgac 280 Query: 451 gtt 453 ||| Sbjct: 281 gtt 283
>ref|NM_194218.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1729 Score = 46.1 bits (23), Expect = 0.11 Identities = 53/63 (84%) Strand = Plus / Minus Query: 391 caccctgtgctcggcgctctcgtacctgtcgttgctccacacctggatgatgtcgccgac 450 |||||||||||| |||||| |||| |||||||||||| |||| | || ||||||||| Sbjct: 1218 caccctgtgctccacgctcttgtacacatcgttgctccacgcctgcaggaggtcgccgac 1159 Query: 451 gtt 453 ||| Sbjct: 1158 gtt 1156
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 46.1 bits (23), Expect = 0.11 Identities = 53/63 (84%) Strand = Plus / Minus Query: 391 caccctgtgctcggcgctctcgtacctgtcgttgctccacacctggatgatgtcgccgac 450 |||||||||||| |||||| |||| |||||||||||| |||| | || ||||||||| Sbjct: 218032 caccctgtgctccacgctcttgtacacatcgttgctccacgcctgcaggaggtcgccgac 217973 Query: 451 gtt 453 ||| Sbjct: 217972 gtt 217970
>dbj|AP005187.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0446F04 Length = 175390 Score = 46.1 bits (23), Expect = 0.11 Identities = 53/63 (84%) Strand = Plus / Minus Query: 391 caccctgtgctcggcgctctcgtacctgtcgttgctccacacctggatgatgtcgccgac 450 |||||||||||| |||||| |||| |||||||||||| |||| | || ||||||||| Sbjct: 52896 caccctgtgctccacgctcttgtacacatcgttgctccacgcctgcaggaggtcgccgac 52837 Query: 451 gtt 453 ||| Sbjct: 52836 gtt 52834
>dbj|AK109056.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-154-E10, full insert sequence Length = 1076 Score = 46.1 bits (23), Expect = 0.11 Identities = 53/63 (84%) Strand = Plus / Plus Query: 391 caccctgtgctcggcgctctcgtacctgtcgttgctccacacctggatgatgtcgccgac 450 |||||||||||| |||||| |||| |||||||||||| |||| | || ||||||||| Sbjct: 221 caccctgtgctccacgctcttgtacacatcgttgctccacgcctgcaggaggtcgccgac 280 Query: 451 gtt 453 ||| Sbjct: 281 gtt 283
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 316 cggctcgaccatggcgtcgctg 337 |||||||||||||||||||||| Sbjct: 14402714 cggctcgaccatggcgtcgctg 14402693 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 ccacacctggatgatgtcgc 446 |||||||||||||||||||| Sbjct: 8465466 ccacacctggatgatgtcgc 8465485
>dbj|AP005707.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0465E03 Length = 151206 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 316 cggctcgaccatggcgtcgctg 337 |||||||||||||||||||||| Sbjct: 94517 cggctcgaccatggcgtcgctg 94496
>dbj|AP005683.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1585_D02 Length = 103172 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 316 cggctcgaccatggcgtcgctg 337 |||||||||||||||||||||| Sbjct: 2279 cggctcgaccatggcgtcgctg 2258
>dbj|AK060606.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-B10, full insert sequence Length = 1752 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 316 cggctcgaccatggcgtcgctg 337 |||||||||||||||||||||| Sbjct: 91 cggctcgaccatggcgtcgctg 112
>gb|DP000063.1| Oryctolagus cuniculus target 117 genomic scaffold Length = 489372 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 221 tttttgaagttgctgttcttc 241 ||||||||||||||||||||| Sbjct: 461046 tttttgaagttgctgttcttc 461026
>gb|AC026398.5| Homo sapiens chromosome 5 clone CTB-127M13, complete sequence Length = 88783 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 221 tttttgaagttgctgttcttc 241 ||||||||||||||||||||| Sbjct: 44642 tttttgaagttgctgttcttc 44662
>gb|AF038840.1|AF038840 Dendrobium crumenatum 1-aminocyclopropane-1-carboxylate oxidase mRNA, complete cds Length = 1544 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 328 ggcgtcgctgccggggttgaagaag 352 ||||||||||||||||||| ||||| Sbjct: 944 ggcgtcgctgccggggttgtagaag 920
>gb|AY598795.1| Laelia anceps 1-aminocyclopropane-1-carboxylate oxidase mRNA, complete cds Length = 1050 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 328 ggcgtcgctgccggggttgaagaa 351 ||||||||||||||||||| |||| Sbjct: 732 ggcgtcgctgccggggttgtagaa 709
>gb|AY598794.1| Cattleya intermedia 1-aminocyclopropane-1-carboxylate oxidase mRNA, complete cds Length = 1024 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 328 ggcgtcgctgccggggttgaagaa 351 ||||||||||||||||||| |||| Sbjct: 731 ggcgtcgctgccggggttgtagaa 708
>gb|AY598793.1| Cattleya bicolor 1-aminocyclopropane-1-carboxylate oxidase mRNA, complete cds Length = 1300 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 328 ggcgtcgctgccggggttgaagaa 351 ||||||||||||||||||| |||| Sbjct: 997 ggcgtcgctgccggggttgtagaa 974
>emb|AL589703.6| Human DNA sequence from clone RP11-127L21 on chromosome 9 Contains a novel gene and a pseudogene similar to part of tubulin beta chain, complete sequence Length = 48697 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 tttgaagttgctgttcttcc 242 |||||||||||||||||||| Sbjct: 3732 tttgaagttgctgttcttcc 3751
>gb|AC026226.9| Homo sapiens chromosome 10 clone RP11-81B10, complete sequence Length = 158556 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 tttttgaagttgctgttctt 240 |||||||||||||||||||| Sbjct: 91702 tttttgaagttgctgttctt 91683
>gb|AC068924.11| Oryza sativa chromosome 10 BAC OSJNBa0026L12 genomic sequence, complete sequence Length = 152172 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 gtagtactattacaaatggt 119 |||||||||||||||||||| Sbjct: 61789 gtagtactattacaaatggt 61808
>gb|AC004561.3| Arabidopsis thaliana chromosome 2 clone F16P2 map ve014, complete sequence Length = 131743 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 cataaggttggaattaatac 84 |||||||||||||||||||| Sbjct: 85519 cataaggttggaattaatac 85500
>gb|AC016343.5| Homo sapiens chromosome 15, clone RP11-142M4, complete sequence Length = 177386 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 tttttgaagttgctgttctt 240 |||||||||||||||||||| Sbjct: 29399 tttttgaagttgctgttctt 29418
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 316 cggctcgaccatggcgtcgc 335 |||||||||||||||||||| Sbjct: 1716746 cggctcgaccatggcgtcgc 1716765
>dbj|AK045273.1| Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length enriched library, clone:B130054L12 product:unclassifiable, full insert sequence Length = 3126 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 tgctgttcttcctggtgctg 250 |||||||||||||||||||| Sbjct: 825 tgctgttcttcctggtgctg 844
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 gtagtactattacaaatggt 119 |||||||||||||||||||| Sbjct: 19314592 gtagtactattacaaatggt 19314573
>gb|AC003981.2|AC003981 Genomic sequence for Arabidopsis thaliana BAC F22O13 from chromosome I, complete sequence Length = 133843 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 cataaggttggaattaatac 84 |||||||||||||||||||| Sbjct: 94416 cataaggttggaattaatac 94435
>gb|AC051643.5| Homo sapiens chromosome 15, clone RP11-615L8, complete sequence Length = 158682 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 tttttgaagttgctgttctt 240 |||||||||||||||||||| Sbjct: 134423 tttttgaagttgctgttctt 134442
>gb|AC012190.3|T22I11 Arabidopsis thaliana chromosome 1 BAC T22I11 sequence, complete sequence Length = 68986 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 cataaggttggaattaatac 84 |||||||||||||||||||| Sbjct: 59525 cataaggttggaattaatac 59544
>gb|AC007887.9|AC007887 Genomic sequence for Arabidopsis thaliana BAC F15O4 from chromosome I, complete sequence Length = 158096 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 cataaggttggaattaatac 84 |||||||||||||||||||| Sbjct: 31351 cataaggttggaattaatac 31332
>dbj|AP005926.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0054E15 Length = 142898 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 ccacacctggatgatgtcgc 446 |||||||||||||||||||| Sbjct: 90815 ccacacctggatgatgtcgc 90834
>emb|AL928908.16| Zebrafish DNA sequence from clone DKEY-221L4 in linkage group 17, complete sequence Length = 229790 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 agttgctgttcttcctggtg 247 |||||||||||||||||||| Sbjct: 20937 agttgctgttcttcctggtg 20956
>gb|AE005109.1| Halobacterium sp. NRC-1 section 140 of 170 of the complete genome Length = 12026 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 316 cggctcgaccatggcgtcgctgcc 339 |||| ||||||||||||||||||| Sbjct: 4039 cggcgcgaccatggcgtcgctgcc 4016
>dbj|AB010693.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21C13 Length = 75709 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 cataaggttggaattaatac 84 |||||||||||||||||||| Sbjct: 24037 cataaggttggaattaatac 24056
>dbj|AB028611.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MFE16 Length = 82646 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 cataaggttggaattaatac 84 |||||||||||||||||||| Sbjct: 24542 cataaggttggaattaatac 24561
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 gtagtactattacaaatggt 119 |||||||||||||||||||| Sbjct: 19325868 gtagtactattacaaatggt 19325849
>emb|AL606908.10| Mouse DNA sequence from clone RP23-273D6 on chromosome 4, complete sequence Length = 212360 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 tgctgttcttcctggtgctg 250 |||||||||||||||||||| Sbjct: 132693 tgctgttcttcctggtgctg 132674 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,626,226 Number of Sequences: 3902068 Number of extensions: 3626226 Number of successful extensions: 67855 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67551 Number of HSP's gapped (non-prelim): 296 length of query: 495 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 473 effective length of database: 17,147,199,772 effective search space: 8110625492156 effective search space used: 8110625492156 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
