ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart28e03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CPPM_ARATH (O49290) Putative carboxyvinyl-carboxyphosphonate pho... 55 2e-07
2CPPM_DIACA (Q05957) Putative carboxyvinyl-carboxyphosphonate pho... 50 4e-06
3CPPM_BACHD (Q9Z9T7) Putative carboxyvinyl-carboxyphosphonate pho... 45 1e-04
4PRPB1_CORGL (Q8NSH8) Probable methylisocitrate lyase 1 (EC 4.1.3... 43 5e-04
5PRPB2_CORGL (Q8NSL2) Probable methylisocitrate lyase 2 (EC 4.1.3... 43 7e-04
6CPPM_STRHY (P11435) Carboxyvinyl-carboxyphosphonate phosphorylmu... 42 0.001
7CPPM_AERPE (Q9YFM7) Putative carboxyvinyl-carboxyphosphonate pho... 42 0.002
8CPPM_BACSU (P54528) Putative carboxyvinyl-carboxyphosphonate pho... 39 0.007
9PRPB_VIBCH (Q9KSC2) Methylisocitrate lyase (EC 4.1.3.30) (2-meth... 32 1.6
10PRPB_ECOLI (P77541) Methylisocitrate lyase (EC 4.1.3.30) (2-meth... 31 2.0
11CC2H1_TRYBB (P38973) Cell division control protein 2 homolog 1 (... 31 2.7
12PRPB_SALTY (Q56062) Methylisocitrate lyase (EC 4.1.3.30) (2-meth... 30 3.5
13VASP_HUMAN (P50552) Vasodilator-stimulated phosphoprotein (VASP) 30 4.5

>CPPM_ARATH (O49290) Putative carboxyvinyl-carboxyphosphonate phosphorylmutase|
           (EC 2.7.8.23) (Carboxyphosphonoenolpyruvate
           phosphonomutase) (CPEP phosphonomutase)
          Length = 335

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 28/85 (32%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
 Frame = -3

Query: 551 KMANMLEGGGKTPILTPAELKEIGFSLVVYPLSLIGVAMRAMEDALLAIKGGGVPPP--A 378
           ++ NM+EGG  TP+ TP ELKE+GF L+V+PL+ +  + RA+ D L  +K  G       
Sbjct: 241 RVCNMIEGG-VTPLHTPDELKEMGFHLIVHPLTALYASTRALVDVLKTLKENGSTRDHLQ 299

Query: 377 SLPSFQEIKDTLGFNRYYQEDKQYT 303
            + +F+E    +  + +++ + +Y+
Sbjct: 300 KMATFEEFNSLVDLDSWFELEARYS 324



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>CPPM_DIACA (Q05957) Putative carboxyvinyl-carboxyphosphonate phosphorylmutase|
           (EC 2.7.8.23) (Carboxyphosphonoenolpyruvate
           phosphonomutase) (CPEP phosphonomutase) (PSR132)
          Length = 318

 Score = 50.1 bits (118), Expect = 4e-06
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
 Frame = -3

Query: 551 KMANMLEGGGKTPILTPAELKEIGFSLVVYPLSLIGVAMRAMEDALLAIKGGGVPPP--A 378
           ++ANM+EGG KTP+ TP E KE+GF L+ + L+ +    RA+ + +  +K  G       
Sbjct: 228 RIANMIEGG-KTPLHTPEEFKEMGFHLIAHSLTAVYATARALVNIMKILKEKGTTRDDLD 286

Query: 377 SLPSFQEIKDTLGFNRYYQEDKQY 306
            + +F E  + +    +Y+ + ++
Sbjct: 287 QMATFSEFNELISLESWYEMESKF 310



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>CPPM_BACHD (Q9Z9T7) Putative carboxyvinyl-carboxyphosphonate phosphorylmutase|
           (EC 2.7.8.23) (Carboxyphosphonoenolpyruvate
           phosphonomutase) (CPEP phosphonomutase)
          Length = 300

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
 Frame = -3

Query: 548 MANMLEGGGKTPILTPAELKEIGFSLVVYPLSLIGVAMRAMEDALLAIKGGGVPPPA--S 375
           +ANM E G KTP++T   L+  GF +V+YP++ + VA +A E     IK  G        
Sbjct: 212 LANMTEFG-KTPLMTAGGLQNAGFQMVIYPVTSLRVAAKAYERIFQLIKDEGTQEAGIED 270

Query: 374 LPSFQEIKDTLGFNRYYQEDK 312
           + + +E+ +T+ ++ +   DK
Sbjct: 271 MQTRKELYETISYDDFEALDK 291



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>PRPB1_CORGL (Q8NSH8) Probable methylisocitrate lyase 1 (EC 4.1.3.30)|
           (2-methylisocitrate lyase 1)
          Length = 305

 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 23/52 (44%), Positives = 35/52 (67%)
 Frame = -3

Query: 548 MANMLEGGGKTPILTPAELKEIGFSLVVYPLSLIGVAMRAMEDALLAIKGGG 393
           +ANM E G KT +L+   L+EIG++ V+YP++ + +AM  +E AL  IK  G
Sbjct: 214 LANMTEFG-KTTLLSADVLEEIGYNAVIYPVTTLRIAMGQVEQALAEIKEHG 264



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>PRPB2_CORGL (Q8NSL2) Probable methylisocitrate lyase 2 (EC 4.1.3.30)|
           (2-methylisocitrate lyase 2)
          Length = 307

 Score = 42.7 bits (99), Expect = 7e-04
 Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
 Frame = -3

Query: 548 MANMLEGGGKTPILTPAELKEIGFSLVVYPLSLIGVAMRAMEDALLAIKGGGVPPP--AS 375
           +ANM E G KT +L    L++IG++ V+YP++L+ +AM  +E AL  I   G+       
Sbjct: 214 LANMTEFG-KTELLPAQLLEDIGYNAVIYPVTLLRIAMGQVEQALGDIANTGIQTDWVDR 272

Query: 374 LPSFQEIKDTLGFNRYYQEDKQYTVPQAQPSTP 276
           +     + + L +N Y   D+Q     A    P
Sbjct: 273 MQHRSRLYELLRYNEYNAFDQQVFTYSADSYKP 305



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>CPPM_STRHY (P11435) Carboxyvinyl-carboxyphosphonate phosphorylmutase (EC|
           2.7.8.23) (Carboxyphosphonoenolpyruvate phosphonomutase)
           (CPEP phosphonomutase)
          Length = 294

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 20/32 (62%), Positives = 26/32 (81%)
 Frame = -3

Query: 548 MANMLEGGGKTPILTPAELKEIGFSLVVYPLS 453
           +ANM+EGG KTP LT  EL+ IG++L +YPLS
Sbjct: 205 LANMVEGG-KTPWLTTKELESIGYNLAIYPLS 235



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>CPPM_AERPE (Q9YFM7) Putative carboxyvinyl-carboxyphosphonate phosphorylmutase|
           (EC 2.7.8.23) (Carboxyphosphonoenolpyruvate
           phosphonomutase) (CPEP phosphonomutase)
          Length = 318

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
 Frame = -3

Query: 548 MANMLEGGGKTPILTPAELKEIGFSLVVYPLSLIGVAMRAMEDALLAIKGGGVPPPA--S 375
           +ANM E G KTP +T  + +E G+ +V++P++    +++A E  L  I   G        
Sbjct: 220 LANMTEFG-KTPYITVDQFREAGYKIVIFPVTTFRASLKASETVLREIMEKGTQKDILDK 278

Query: 374 LPSFQEIKDTLGFNRYYQEDKQ 309
           L +  E  D +G++ Y + D +
Sbjct: 279 LYTRTEFYDLIGYHDYEKRDAE 300



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>CPPM_BACSU (P54528) Putative carboxyvinyl-carboxyphosphonate phosphorylmutase|
           (EC 2.7.8.23) (Carboxyphosphonoenolpyruvate
           phosphonomutase) (CPEP phosphonomutase)
          Length = 301

 Score = 39.3 bits (90), Expect = 0.007
 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
 Frame = -3

Query: 548 MANMLEGGGKTPILTPAELKEIGFSLVVYPLSLIGVAMRAMEDALLAIKGGGVPPPA--S 375
           +ANM E G KTP     E +++GF +V+YP++ +  A +A E     +K  G        
Sbjct: 212 LANMTEFG-KTPYYRADEFEDMGFHMVIYPVTSLRAAAKACERMFGLMKEHGSQKEGLHD 270

Query: 374 LPSFQEIKDTLGFNRYYQEDK 312
           + + +E+ DT+ +  Y   DK
Sbjct: 271 MQTRKELYDTISYYDYEALDK 291



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>PRPB_VIBCH (Q9KSC2) Methylisocitrate lyase (EC 4.1.3.30) (2-methylisocitrate|
           lyase)
          Length = 308

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 23/89 (25%), Positives = 42/89 (47%)
 Frame = -3

Query: 548 MANMLEGGGKTPILTPAELKEIGFSLVVYPLSLIGVAMRAMEDALLAIKGGGVPPPASLP 369
           +AN+ E G +TP+ +  +L  +   +V+YPLS      +A E+    +   G    A L 
Sbjct: 222 LANITEFG-QTPLYSGEQLAAVNVDMVLYPLSAFRAMNKAAENVYRHLLEHG-NQEALLD 279

Query: 368 SFQEIKDTLGFNRYYQEDKQYTVPQAQPS 282
             Q  K+   +  Y++ + +     +QPS
Sbjct: 280 QMQTRKELYAYLHYHEYEDKLDQLFSQPS 308



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>PRPB_ECOLI (P77541) Methylisocitrate lyase (EC 4.1.3.30) (2-methylisocitrate|
           lyase)
          Length = 295

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
 Frame = -3

Query: 548 MANMLEGGGKTPILTPAELKEIGFSLVVYPLSLIGVAMRAMEDALLAIKGGGVPPPA--S 375
           +AN+ E G  TP+ T  EL+    ++ +YPLS      RA E     ++  G       +
Sbjct: 207 LANITEFGA-TPLFTTDELRSAHVAMALYPLSAFRAMNRAAEHVYNVLRQEGTQKSVIDT 265

Query: 374 LPSFQEIKDTLGFNRYYQE 318
           + +  E+ +++ + +Y ++
Sbjct: 266 MQTRNELYESINYYQYEEK 284



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>CC2H1_TRYBB (P38973) Cell division control protein 2 homolog 1 (EC 2.7.11.22)|
          Length = 301

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 21/91 (23%), Positives = 41/91 (45%)
 Frame = +1

Query: 37  LTPGIQVC*HQKQHTFTNISPPHLQLAKIVCLKINTIALYHCSEVQISNFQKQMDTDGSV 216
           L  G++ C H++     ++ PP+L +++   LK+    L     + +  F +++     V
Sbjct: 111 LLSGVRFC-HERNVLHRDLKPPNLLISREKELKLADFGLGRAFGIPVKKFTQEV-----V 164

Query: 217 DTWMPFPYANGDAPFYGLPLGVDGWACGTVY 309
             W   P     +  YG P  VD W+ G ++
Sbjct: 165 TLWYRSPDVLLGSTQYGTP--VDIWSVGCIF 193



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>PRPB_SALTY (Q56062) Methylisocitrate lyase (EC 4.1.3.30) (2-methylisocitrate|
           lyase)
          Length = 294

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -3

Query: 548 MANMLEGGGKTPILTPAELKEIGFSLVVYPLSLIGVAMRAMEDALLAIKGGG 393
           +AN+ E G  TP+ T  EL+    ++ +YPLS      RA E     ++  G
Sbjct: 207 LANITEFGA-TPLFTTDELRSAHVAMALYPLSAFRAMNRAAEKVYTVLRQEG 257



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>VASP_HUMAN (P50552) Vasodilator-stimulated phosphoprotein (VASP)|
          Length = 379

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -3

Query: 428 MEDALLAIKGGGVPPPASLPSF 363
           M  AL A++GGG PPP +LP++
Sbjct: 105 MASALEALEGGGPPPPPALPTW 126


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,533,158
Number of Sequences: 219361
Number of extensions: 2062528
Number of successful extensions: 5264
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5259
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4488201198
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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