ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart28e03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_472275.1| Oryza sativa (japonica cultivar-group), predic... 258 2e-65
2dbj|AK104891.1| Oryza sativa (japonica cultivar-group) cDNA clon... 258 2e-65
3dbj|AK067193.1| Oryza sativa (japonica cultivar-group) cDNA clon... 258 2e-65
4gb|BT016201.1| Zea mays clone Contig34 mRNA sequence 232 1e-57
5emb|AL731601.3|OSJN00245 Oryza sativa genomic DNA, chromosome 4,... 161 3e-36
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 161 3e-36
7ref|XM_473085.1| Oryza sativa (japonica cultivar-group), predic... 115 2e-22
8gb|AY106733.1| Zea mays PCO107634 mRNA sequence 94 6e-16
9emb|AL731638.3|OSJN00283 Oryza sativa genomic DNA, chromosome 4,... 76 1e-10
10emb|AL606604.4| Oryza sativa genomic DNA, chromosome 4, BAC clon... 76 1e-10
11gb|BT016905.1| Zea mays clone Contig738 mRNA sequence 70 8e-09
12emb|AL512593.9| Human DNA sequence from clone RP11-508N12 on chr... 44 0.48
13ref|XM_757323.1| Ustilago maydis 521 hypothetical protein (UM062... 40 7.5
14gb|AC125318.4| Mus musculus BAC clone RP24-301F13 from chromosom... 40 7.5
15gb|AC130837.4| Mus musculus BAC clone RP24-157P23 from chromosom... 40 7.5
16gb|AC092265.3| Homo sapiens chromosome 1 clone RP4-656G21, compl... 40 7.5
17emb|AL139811.30| Human DNA sequence from clone RP11-75A9 on chro... 40 7.5
18emb|AL031963.40|HS40E16 Human DNA sequence from clone RP1-40E16 ... 40 7.5
19gb|AC005831.1| Homo sapiens 12p13.3 PAC RPCI5-1180D12 (Roswell P... 40 7.5
20gb|AC021224.7|AC021224 Homo sapiens chromosome 18, clone RP11-15... 40 7.5
21gb|AC150256.5| Aedes aegypti, clone XX-90O23, complete sequence 40 7.5
22gb|AC078860.19| Homo sapiens 12 BAC RP11-186F10 (Roswell Park Ca... 40 7.5
23dbj|AK130490.1| Homo sapiens cDNA FLJ26980 fis, clone SLV02741 40 7.5
24emb|AL049836.3|CNS0000H Human chromosome 14 DNA sequence BAC R-1... 40 7.5
25emb|AL355096.4|CNS05TCF Human chromosome 14 DNA sequence BAC R-1... 40 7.5
26gb|AC126806.3| Mus musculus BAC clone RP23-158J3 from chromosome... 40 7.5
27dbj|AP002964.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 7.5
28gb|AC151975.1| Mus musculus BAC clone RP24-423F11 from 8, comple... 40 7.5
29gb|AC134324.3| Mus musculus BAC clone RP24-532P18 from 9, comple... 40 7.5
30dbj|AP006663.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 7.5
31emb|AL645586.9| Mouse DNA sequence from clone RP23-302O5 on chro... 40 7.5 
>ref|XM_472275.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1170

 Score =  258 bits (130), Expect = 2e-65
 Identities = 205/230 (89%)
 Strand = Plus / Minus

                                                                       
Query: 324 gtaatagcggttgaaccctagagtatccttgatctcctgaaaagatggcaggctggcagg 383
           |||||| ||||| ||||||||||||||||||||||||||||||||||||| |||  ||||
Sbjct: 897 gtaatatcggttaaaccctagagtatccttgatctcctgaaaagatggcaagctaccagg 838

                                                                       
Query: 384 tgggggtacgccaccaccttttatcgcgagtagagcatcctccattgcacgcattgctac 443
           | ||||| | |||  || ||||||||| |  |||||||||||||||||  |||||| |||
Sbjct: 837 tcggggtgcaccagtactttttatcgcaatcagagcatcctccattgcgagcattgatac 778

                                                                       
Query: 444 cccaattagggacaacggatagactacaaggctaaaaccaatctccttgagttcagcagg 503
           |||||| |||||||| || |||||||| |||||||||||||||||||  |||||||||||
Sbjct: 777 cccaatcagggacaatgggtagactacgaggctaaaaccaatctcctgaagttcagcagg 718

                                                             
Query: 504 ggtcaatatgggagttttaccaccaccttctaacatgtttgccatctttg 553
           | |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 717 gctcaatatgggagttttaccaccaccttctagcatgtttgccatctttg 668
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>dbj|AK104891.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-D08, full
           insert sequence
          Length = 1488

 Score =  258 bits (130), Expect = 2e-65
 Identities = 205/230 (89%)
 Strand = Plus / Minus

                                                                       
Query: 324 gtaatagcggttgaaccctagagtatccttgatctcctgaaaagatggcaggctggcagg 383
           |||||| ||||| ||||||||||||||||||||||||||||||||||||| |||  ||||
Sbjct: 984 gtaatatcggttaaaccctagagtatccttgatctcctgaaaagatggcaagctaccagg 925

                                                                       
Query: 384 tgggggtacgccaccaccttttatcgcgagtagagcatcctccattgcacgcattgctac 443
           | ||||| | |||  || ||||||||| |  |||||||||||||||||  |||||| |||
Sbjct: 924 tcggggtgcaccagtactttttatcgcaatcagagcatcctccattgcgagcattgatac 865

                                                                       
Query: 444 cccaattagggacaacggatagactacaaggctaaaaccaatctccttgagttcagcagg 503
           |||||| |||||||| || |||||||| |||||||||||||||||||  |||||||||||
Sbjct: 864 cccaatcagggacaatgggtagactacgaggctaaaaccaatctcctgaagttcagcagg 805

                                                             
Query: 504 ggtcaatatgggagttttaccaccaccttctaacatgtttgccatctttg 553
           | |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 804 gctcaatatgggagttttaccaccaccttctagcatgtttgccatctttg 755
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>dbj|AK067193.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098I05, full
            insert sequence
          Length = 1588

 Score =  258 bits (130), Expect = 2e-65
 Identities = 205/230 (89%)
 Strand = Plus / Minus

                                                                        
Query: 324  gtaatagcggttgaaccctagagtatccttgatctcctgaaaagatggcaggctggcagg 383
            |||||| ||||| ||||||||||||||||||||||||||||||||||||| |||  ||||
Sbjct: 1026 gtaatatcggttaaaccctagagtatccttgatctcctgaaaagatggcaagctaccagg 967

                                                                        
Query: 384  tgggggtacgccaccaccttttatcgcgagtagagcatcctccattgcacgcattgctac 443
            | ||||| | |||  || ||||||||| |  |||||||||||||||||  |||||| |||
Sbjct: 966  tcggggtgcaccagtactttttatcgcaatcagagcatcctccattgcgagcattgatac 907

                                                                        
Query: 444  cccaattagggacaacggatagactacaaggctaaaaccaatctccttgagttcagcagg 503
            |||||| |||||||| || |||||||| |||||||||||||||||||  |||||||||||
Sbjct: 906  cccaatcagggacaatgggtagactacgaggctaaaaccaatctcctgaagttcagcagg 847

                                                              
Query: 504  ggtcaatatgggagttttaccaccaccttctaacatgtttgccatctttg 553
            | |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 846  gctcaatatgggagttttaccaccaccttctagcatgtttgccatctttg 797
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>gb|BT016201.1| Zea mays clone Contig34 mRNA sequence
          Length = 1330

 Score =  232 bits (117), Expect = 1e-57
 Identities = 201/229 (87%)
 Strand = Plus / Plus

                                                                       
Query: 325 taatagcggttgaaccctagagtatccttgatctcctgaaaagatggcaggctggcaggt 384
           |||||||||||||| || |  ||||||||||||||||||||||||||||||  |  ||||
Sbjct: 323 taatagcggttgaaacccaatgtatccttgatctcctgaaaagatggcaggacgctaggt 382

                                                                       
Query: 385 gggggtacgccaccaccttttatcgcgagtagagcatcctccattgcacgcattgctacc 444
           || ||||| || ||  |||||||||| | ||||||||||| |||||||||||||| ||||
Sbjct: 383 ggaggtacaccgccgtcttttatcgcaactagagcatcctgcattgcacgcattgatacc 442

                                                                       
Query: 445 ccaattagggacaacggatagactacaaggctaaaaccaatctccttgagttcagcaggg 504
           |||| || ||| || ||||| |||||||| || |||||||| ||||  ||||||||||||
Sbjct: 443 ccaactaaggataaaggatatactacaagcctgaaaccaatttcctcaagttcagcaggg 502

                                                            
Query: 505 gtcaatatgggagttttaccaccaccttctaacatgtttgccatctttg 553
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ctcaatatgggagttttaccaccaccttctaacatgtttgccatctttg 551
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>emb|AL731601.3|OSJN00245 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0044M19,
             complete sequence
          Length = 188317

 Score =  161 bits (81), Expect = 3e-36
 Identities = 114/125 (91%)
 Strand = Plus / Plus

                                                                         
Query: 422   cctccattgcacgcattgctaccccaattagggacaacggatagactacaaggctaaaac 481
             ||||||||||  |||||| ||||||||| |||||||| || |||||||| ||||||||||
Sbjct: 92353 cctccattgcgagcattgataccccaatcagggacaatgggtagactacgaggctaaaac 92412

                                                                         
Query: 482   caatctccttgagttcagcaggggtcaatatgggagttttaccaccaccttctaacatgt 541
             |||||||||  |||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 92413 caatctcctgaagttcagcagggctcaatatgggagttttaccaccaccttctagcatgt 92472

                  
Query: 542   ttgcc 546
             |||||
Sbjct: 92473 ttgcc 92477



 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 87/101 (86%)
 Strand = Plus / Plus

                                                                         
Query: 324   gtaatagcggttgaaccctagagtatccttgatctcctgaaaagatggcaggctggcagg 383
             |||||| ||||| ||||||||||||||||||||||||||||||||||||| |||  ||||
Sbjct: 91495 gtaatatcggttaaaccctagagtatccttgatctcctgaaaagatggcaagctaccagg 91554

                                                      
Query: 384   tgggggtacgccaccaccttttatcgcgagtagagcatcct 424
             | ||||| | |||  || ||||||||| |  ||||||||||
Sbjct: 91555 tcggggtgcaccagtactttttatcgcaatcagagcatcct 91595
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  161 bits (81), Expect = 3e-36
 Identities = 114/125 (91%)
 Strand = Plus / Plus

                                                                            
Query: 422      cctccattgcacgcattgctaccccaattagggacaacggatagactacaaggctaaaac 481
                ||||||||||  |||||| ||||||||| |||||||| || |||||||| ||||||||||
Sbjct: 19000428 cctccattgcgagcattgataccccaatcagggacaatgggtagactacgaggctaaaac 19000487

                                                                            
Query: 482      caatctccttgagttcagcaggggtcaatatgggagttttaccaccaccttctaacatgt 541
                |||||||||  |||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 19000488 caatctcctgaagttcagcagggctcaatatgggagttttaccaccaccttctagcatgt 19000547

                     
Query: 542      ttgcc 546
                |||||
Sbjct: 19000548 ttgcc 19000552



 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 87/101 (86%)
 Strand = Plus / Plus

                                                                            
Query: 324      gtaatagcggttgaaccctagagtatccttgatctcctgaaaagatggcaggctggcagg 383
                |||||| ||||| ||||||||||||||||||||||||||||||||||||| |||  ||||
Sbjct: 18999570 gtaatatcggttaaaccctagagtatccttgatctcctgaaaagatggcaagctaccagg 18999629

                                                         
Query: 384      tgggggtacgccaccaccttttatcgcgagtagagcatcct 424
                | ||||| | |||  || ||||||||| |  ||||||||||
Sbjct: 18999630 tcggggtgcaccagtactttttatcgcaatcagagcatcct 18999670



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 47/50 (94%)
 Strand = Plus / Minus

                                                                  
Query: 493      agttcagcaggggtcaatatgggagttttaccaccaccttctaacatgtt 542
                |||||||||||| |||| || |||||||||||||||||||||||||||||
Sbjct: 25164846 agttcagcagggctcaaaataggagttttaccaccaccttctaacatgtt 25164797



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 78/97 (80%)
 Strand = Plus / Minus

                                                                            
Query: 328      tagcggttgaaccctagagtatccttgatctcctgaaaagatggcaggctggcaggtggg 387
                |||| ||| ||||| |||||||| || ||||||| ||| |||||||| |||   || || 
Sbjct: 25165605 tagctgttaaaccccagagtatctttaatctcctcaaatgatggcagactgctgggagga 25165546

                                                     
Query: 388      ggtacgccaccaccttttatcgcgagtagagcatcct 424
                |||| || |||||||||||| || |  ||||||||||
Sbjct: 25165545 ggtatgcgaccaccttttatagcaataagagcatcct 25165509
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>ref|XM_473085.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1512

 Score =  115 bits (58), Expect = 2e-22
 Identities = 184/226 (81%)
 Strand = Plus / Minus

                                                                        
Query: 328  tagcggttgaaccctagagtatccttgatctcctgaaaagatggcaggctggcaggtggg 387
            |||| ||| ||||| |||||||| || ||||||| ||| |||||||| |||   || || 
Sbjct: 1073 tagctgttaaaccccagagtatctttaatctcctcaaatgatggcagactgctgggagga 1014

                                                                        
Query: 388  ggtacgccaccaccttttatcgcgagtagagcatcctccattgcacgcattgctacccca 447
            |||| || |||||||||||| || |  ||||||||||||||||||||||||| |||||||
Sbjct: 1013 ggtatgcgaccaccttttatagcaataagagcatcctccattgcacgcattgatacccca 954

                                                                        
Query: 448  attagggacaacggatagactacaaggctaaaaccaatctccttgagttcagcaggggtc 507
            || || || || || ||  |||  ||  || ||||| | || |  |||||||||||| ||
Sbjct: 953  atcagagataatgggtatgctatgagtttataaccagtttcttcaagttcagcagggctc 894

                                                          
Query: 508  aatatgggagttttaccaccaccttctaacatgtttgccatctttg 553
            || || ||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 893  aaaataggagttttaccaccaccttctaacatgttagccatttttg 848
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>gb|AY106733.1| Zea mays PCO107634 mRNA sequence
          Length = 1094

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 194/243 (79%)
 Strand = Plus / Minus

                                                                       
Query: 311 gtttatcttcctggtaatagcggttgaaccctagagtatccttgatctcctgaaaagatg 370
           |||| ||||| | ||||||| ||||||| || ||||||| ||||||||||| ||| | ||
Sbjct: 462 gtttgtcttcttcgtaatagtggttgaagccaagagtattcttgatctcctcaaatgttg 403

                                                                       
Query: 371 gcaggctggcaggtgggggtacgccaccaccttttatcgcgagtagagcatcctccattg 430
           ||| ||||   || || |||| || ||||||  |||| || |  ||||||||||||||||
Sbjct: 402 gcaagctgcttggaggaggtatgcgaccaccccttatagcaataagagcatcctccattg 343

                                                                       
Query: 431 cacgcattgctaccccaattagggacaacggatagactacaaggctaaaaccaatctcct 490
           ||||||| | ||| |||||||| || || |||||| |||  |   || |||| || || |
Sbjct: 342 cacgcatcgatacaccaattagagataatggataggctatgattttataacctatttctt 283

                                                                       
Query: 491 tgagttcagcaggggtcaatatgggagttttaccaccaccttctaacatgtttgccatct 550
             |||||| ||||| |||  || ||||||||||||||||||||||||||||| ||||| |
Sbjct: 282 ccagttcaacagggctcagaataggagttttaccaccaccttctaacatgttggccattt 223

              
Query: 551 ttg 553
           |||
Sbjct: 222 ttg 220
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>emb|AL731638.3|OSJN00283 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0116K07,
             complete sequence
          Length = 130779

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 47/50 (94%)
 Strand = Plus / Minus

                                                               
Query: 493   agttcagcaggggtcaatatgggagttttaccaccaccttctaacatgtt 542
             |||||||||||| |||| || |||||||||||||||||||||||||||||
Sbjct: 46513 agttcagcagggctcaaaataggagttttaccaccaccttctaacatgtt 46464



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 78/97 (80%)
 Strand = Plus / Minus

                                                                         
Query: 328   tagcggttgaaccctagagtatccttgatctcctgaaaagatggcaggctggcaggtggg 387
             |||| ||| ||||| |||||||| || ||||||| ||| |||||||| |||   || || 
Sbjct: 47272 tagctgttaaaccccagagtatctttaatctcctcaaatgatggcagactgctgggagga 47213

                                                  
Query: 388   ggtacgccaccaccttttatcgcgagtagagcatcct 424
             |||| || |||||||||||| || |  ||||||||||
Sbjct: 47212 ggtatgcgaccaccttttatagcaataagagcatcct 47176
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>emb|AL606604.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0014K14,
              complete sequence
          Length = 150187

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 47/50 (94%)
 Strand = Plus / Minus

                                                                
Query: 493    agttcagcaggggtcaatatgggagttttaccaccaccttctaacatgtt 542
              |||||||||||| |||| || |||||||||||||||||||||||||||||
Sbjct: 112273 agttcagcagggctcaaaataggagttttaccaccaccttctaacatgtt 112224



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 78/97 (80%)
 Strand = Plus / Minus

                                                                          
Query: 328    tagcggttgaaccctagagtatccttgatctcctgaaaagatggcaggctggcaggtggg 387
              |||| ||| ||||| |||||||| || ||||||| ||| |||||||| |||   || || 
Sbjct: 113032 tagctgttaaaccccagagtatctttaatctcctcaaatgatggcagactgctgggagga 112973

                                                   
Query: 388    ggtacgccaccaccttttatcgcgagtagagcatcct 424
              |||| || |||||||||||| || |  ||||||||||
Sbjct: 112972 ggtatgcgaccaccttttatagcaataagagcatcct 112936
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>gb|BT016905.1| Zea mays clone Contig738 mRNA sequence
          Length = 868

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 104/127 (81%)
 Strand = Plus / Plus

                                                                       
Query: 311 gtttatcttcctggtaatagcggttgaaccctagagtatccttgatctcctgaaaagatg 370
           |||| ||||| | ||||||| ||||||| || ||||||| ||||||||||| ||| | ||
Sbjct: 740 gtttgtcttcttcgtaatagtggttgaagccaagagtattcttgatctcctcaaatgttg 799

                                                                       
Query: 371 gcaggctggcaggtgggggtacgccaccaccttttatcgcgagtagagcatcctccattg 430
           ||| ||||   || || |||| || |||||| ||||| || |  ||||||||||||||||
Sbjct: 800 gcaagctgcttggaggaggtatgcgaccaccctttatagcaataagagcatcctccattg 859

                  
Query: 431 cacgcat 437
           |||||||
Sbjct: 860 cacgcat 866
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>emb|AL512593.9| Human DNA sequence from clone RP11-508N12 on chromosome 9 Contains
            two novel genes, the gene for a novel zinc finger protein
            (FLJ14960, KIAA1803), a ribosomal protein L7a (RPL7A)
            pseudogene and the 3' end of a novel gene, complete
            sequence
          Length = 148816

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 517  gttttaccaccaccttctaacatgtt 542
            |||| |||||||||||||||||||||
Sbjct: 9144 gtttcaccaccaccttctaacatgtt 9169
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>ref|XM_757323.1| Ustilago maydis 521 hypothetical protein (UM06269.1) partial mRNA
          Length = 3153

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 355 atctcctgaaaagatggcag 374
           ||||||||||||||||||||
Sbjct: 297 atctcctgaaaagatggcag 316
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>gb|AC125318.4| Mus musculus BAC clone RP24-301F13 from chromosome 8, complete sequence
          Length = 152405

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   caaatctcaaattttcaaaa 191
             ||||||||||||||||||||
Sbjct: 72527 caaatctcaaattttcaaaa 72546
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>gb|AC130837.4| Mus musculus BAC clone RP24-157P23 from chromosome 8, complete sequence
          Length = 155270

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   caaatctcaaattttcaaaa 191
             ||||||||||||||||||||
Sbjct: 14235 caaatctcaaattttcaaaa 14254
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>gb|AC092265.3| Homo sapiens chromosome 1 clone RP4-656G21, complete sequence
          Length = 129231

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 171   acaaatctcaaattttcaaa 190
             ||||||||||||||||||||
Sbjct: 79096 acaaatctcaaattttcaaa 79115
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>emb|AL139811.30| Human DNA sequence from clone RP11-75A9 on chromosome Xp11.23-11.4
              Contains a catenin, beta like 1 (NAP, P14L, C20orf33,
              FLJ21108, NYD-SP19) (CTNNBL1) pseudogene, a
              glyceraldehyde-3-phosphate dehydrogenase (G3PD, GAPDH)
              (GAPD) pseudogene, a transmembrane protein vezatin
              pseudogene, a novel gene (FLJ20344) and two CpG islands,
              complete sequence
          Length = 141469

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 184    tttcaaaagcaaatggatac 203
              ||||||||||||||||||||
Sbjct: 113172 tttcaaaagcaaatggatac 113191
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>emb|AL031963.40|HS40E16 Human DNA sequence from clone RP1-40E16 on chromosome 6p24.1-25.3
             Contains the gene for a novel protein similar to D.
             melanogaster CG5327, a pseudogene similar to serine
             proteinase inhibitor (SERPINB8), two putative novel genes,
             the RIPK1 gene for receptor (TNFRSF)-interacting
             serine-threonine kinase 1, the BPHL gene for biphenyl
             hydrolase-like protein (serine hydrolase), the gene for a
             novel protein similar to tubulin beta polypeptide (TUBB),
             a tubulin beta polypeptide (TUBB) pseudogene, the 3' end
             of a novel gene and CpG islands, complete sequence
          Length = 149546

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 372   caggctggcaggtgggggta 391
             ||||||||||||||||||||
Sbjct: 92893 caggctggcaggtgggggta 92874
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>gb|AC005831.1| Homo sapiens 12p13.3 PAC RPCI5-1180D12 (Roswell Park Cancer Institute
             Human PAC Library) complete sequence
          Length = 144515

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 481   ccaatctccttgagttcagc 500
             ||||||||||||||||||||
Sbjct: 44314 ccaatctccttgagttcagc 44295
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>gb|AC021224.7|AC021224 Homo sapiens chromosome 18, clone RP11-158N19, complete sequence
          Length = 151794

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 179   caaattttcaaaagcaaatg 198
             ||||||||||||||||||||
Sbjct: 55073 caaattttcaaaagcaaatg 55092
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>gb|AC150256.5| Aedes aegypti, clone XX-90O23, complete sequence
          Length = 70397

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   ctcaaattttcaaaagcaaa 196
             ||||||||||||||||||||
Sbjct: 64751 ctcaaattttcaaaagcaaa 64732
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>gb|AC078860.19| Homo sapiens 12 BAC RP11-186F10 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 145165

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 373    aggctggcaggtgggggtac 392
              ||||||||||||||||||||
Sbjct: 113700 aggctggcaggtgggggtac 113681
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>dbj|AK130490.1| Homo sapiens cDNA FLJ26980 fis, clone SLV02741
          Length = 1777

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 481 ccaatctccttgagttcagc 500
           ||||||||||||||||||||
Sbjct: 336 ccaatctccttgagttcagc 317
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>emb|AL049836.3|CNS0000H Human chromosome 14 DNA sequence BAC R-1029J19 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 207774

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 125   tctgcctcaagataaacacgattg 148
             |||||||||| |||||||||||||
Sbjct: 29683 tctgcctcaacataaacacgattg 29706
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>emb|AL355096.4|CNS05TCF Human chromosome 14 DNA sequence BAC R-168L7 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 189389

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 125   tctgcctcaagataaacacgattg 148
             |||||||||| |||||||||||||
Sbjct: 34647 tctgcctcaacataaacacgattg 34624
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>gb|AC126806.3| Mus musculus BAC clone RP23-158J3 from chromosome 9, complete sequence
          Length = 202590

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 178    tcaaattttcaaaagcaaat 197
              ||||||||||||||||||||
Sbjct: 193816 tcaaattttcaaaagcaaat 193797
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>dbj|AP002964.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-114K7, complete
             sequence
          Length = 127508

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 178   tcaaattttcaaaagcaaat 197
             ||||||||||||||||||||
Sbjct: 56324 tcaaattttcaaaagcaaat 56343
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>gb|AC151975.1| Mus musculus BAC clone RP24-423F11 from 8, complete sequence
          Length = 198686

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 172    caaatctcaaattttcaaaa 191
              ||||||||||||||||||||
Sbjct: 163173 caaatctcaaattttcaaaa 163192
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>gb|AC134324.3| Mus musculus BAC clone RP24-532P18 from 9, complete sequence
          Length = 176054

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 178    tcaaattttcaaaagcaaat 197
              ||||||||||||||||||||
Sbjct: 142991 tcaaattttcaaaagcaaat 143010
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>dbj|AP006663.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT48G05, TM0358,
           complete sequence
          Length = 111995

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 21  tttattgaaattgaaattga 40
           ||||||||||||||||||||
Sbjct: 847 tttattgaaattgaaattga 828
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>emb|AL645586.9| Mouse DNA sequence from clone RP23-302O5 on chromosome X, complete
              sequence
          Length = 202500

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 83     ttacaaacatttcaccacctcatt 106
              |||||| |||||||||||||||||
Sbjct: 144543 ttacaatcatttcaccacctcatt 144566


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,195,296
Number of Sequences: 3902068
Number of extensions: 5195296
Number of successful extensions: 105839
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105731
Number of HSP's gapped (non-prelim): 107
length of query: 553
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 530
effective length of database: 17,143,297,704
effective search space: 9085947783120
effective search space used: 9085947783120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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