ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart28d10 |
|---|---|
| Clone Library Name | barley_pub |
>KR511_HUMAN (Q6L8G4) Keratin-associated protein 5-11 (Keratin-associated| protein 5.11) (Ultrahigh sulfur keratin-associated protein 5.11) Length = 156 Score = 30.8 bits (68), Expect = 0.82 Identities = 19/53 (35%), Positives = 24/53 (45%) Frame = +2 Query: 194 SESCCR*YCPCSGEVKQIHPLSILCESMACKECKKPSSSAWSSNWRPLCWSST 352 S S C +C S K S C+S CK C SS SS ++P C S+ Sbjct: 93 SSSGCGSFCCQSSCSKPCCCQSSCCQSSCCKPCCCQSSCCQSSCFKPCCCQSS 145 Score = 27.7 bits (60), Expect = 6.9 Identities = 20/64 (31%), Positives = 26/64 (40%) Frame = +2 Query: 200 SCCR*YCPCSGEVKQIHPLSILCESMACKECKKPSSSAWSSNWRPLCWSSTLPSSLLLRY 379 +CC+ C SG S C+S K C SS SS +P C S+ S + Sbjct: 86 NCCKPCCSSSGCG------SFCCQSSCSKPCCCQSSCCQSSCCKPCCCQSSCCQSSCFK- 138 Query: 380 VGCC 391 CC Sbjct: 139 -PCC 141
>CQ028_HUMAN (Q8IV36) Protein C17orf28 (Down-regulated in multiple cancers-1)| Length = 788 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 5/40 (12%) Frame = +2 Query: 272 SMACKECKKPSSSAWSSNWRP-----LCWSSTLPSSLLLR 376 S A +E ++PS+S+ S W P L W S LP ++R Sbjct: 660 SQAWREQRRPSTSSASGQWSPTPEWVLSWKSKLPLQTIMR 699
>MKTX1_MESMA (P56569) Makatoxin-1 (Makatoxin I) (MkTx I)| Length = 64 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/46 (26%), Positives = 18/46 (39%) Frame = +2 Query: 254 LSILCESMACKECKKPSSSAWSSNWRPLCWSSTLPSSLLLRYVGCC 391 L+ C + K K W+ + CW LP + +R G C Sbjct: 18 LNPYCNDLCTKNGAKSGYCQWAGRYGNACWCIDLPDKVPIRISGSC 63
>SCM2_MESMA (P58488) Neurotoxin BmK-M2 (BmK M2) (BmKM2)| Length = 64 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/42 (28%), Positives = 18/42 (42%) Frame = +2 Query: 266 CESMACKECKKPSSSAWSSNWRPLCWSSTLPSSLLLRYVGCC 391 C ++ K K WS + CW LP ++ +R G C Sbjct: 22 CNNLCTKNGAKSGYCQWSGKYGNGCWCIELPDNVPIRVPGKC 63
>SUIS_RABIT (P07768) Sucrase-isomaltase, intestinal [Contains: Sucrase (EC| 3.2.1.48); Isomaltase (EC 3.2.1.10)] Length = 1826 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 6/53 (11%) Frame = -3 Query: 142 TSERLCDPIASTRVFLPVDRNH------HQSLTWYKLHALIFRTSLIYTNIKH 2 T+E LC F P RNH HQ ++ +L+ ++S Y NI++ Sbjct: 640 TTEELCRRWMQLGAFYPFSRNHNADGFEHQDPAFFGQDSLLVKSSRHYLNIRY 692
>YBBP_ECOLI (P77504) Hypothetical protein ybbP| Length = 804 Score = 28.5 bits (62), Expect = 4.1 Identities = 11/24 (45%), Positives = 17/24 (70%) Frame = -3 Query: 250 MDLLDLSRTGAVLAATRLTWAFFF 179 M+L D+ +TGAV +R+TW + F Sbjct: 176 MNLADVDKTGAVQPGSRVTWRYKF 199
>MKTX3_MESMA (P59853) Makatoxin-3 precursor (Makatoxin III) (MkTx III)| Length = 85 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/46 (26%), Positives = 18/46 (39%) Frame = +2 Query: 254 LSILCESMACKECKKPSSSAWSSNWRPLCWSSTLPSSLLLRYVGCC 391 L+ C + K K W+ + CW LP + +R G C Sbjct: 37 LNPYCNDLCTKNGAKSGYCQWAGRYGNACWCIDLPDKVPIRIPGPC 82
>KRA58_HUMAN (O75690) Keratin-associated protein 5-8 (Keratin-associated protein| 5.8) (Ultrahigh sulfur keratin-associated protein 5.8) (Keratin, ultra high-sulfur matrix protein B) (UHS keratin B) (UHS KerB) Length = 187 Score = 28.5 bits (62), Expect = 4.1 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 9/64 (14%) Frame = +2 Query: 200 SCCR*YC--PCSGEVKQIHPLSI-------LCESMACKECKKPSSSAWSSNWRPLCWSST 352 SCC+ C PC + P S C+S CK C SS +P C SS Sbjct: 103 SCCQSSCCKPCCSQSSCCKPCSCSSGCGSSCCQSSCCKPCCSQSSCC-----KPCCCSSG 157 Query: 353 LPSS 364 SS Sbjct: 158 CGSS 161
>SCX4_BUTOM (P59354) Alpha-like neurotoxin IV (Bom IV) (BomIV) (Bom4)| Length = 65 Score = 28.1 bits (61), Expect = 5.3 Identities = 11/42 (26%), Positives = 16/42 (38%) Frame = +2 Query: 266 CESMACKECKKPSSSAWSSNWRPLCWSSTLPSSLLLRYVGCC 391 C + K K W + CW LP ++ +R G C Sbjct: 22 CNDLCTKNGAKSGYCQWLGKYGNACWCEDLPDNVPIRIPGKC 63
>KR104_HUMAN (P60372) Keratin-associated protein 10-4 (Keratin-associated| protein 10.4) (High sulfur keratin-associated protein 10.4) (Keratin-associated protein 18-4) (Keratin-associated protein 18.4) Length = 401 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%) Frame = +2 Query: 197 ESCCR*YCPCSGEVKQIHPLSILCESMACKE-CKKPSSS-AWSSNWRPLCWSST 352 +S C+ C S +Q + + C+++ CK C + SSS S+ +P C +S+ Sbjct: 211 QSSCQPACCTSSSCQQACCVPVCCKTVCCKPVCSEDSSSCCQQSSCQPACCTSS 264
>YIY8_SCHPO (Q9UUI5) Hypothetical protein C22F8.08 in chromosome I| Length = 926 Score = 28.1 bits (61), Expect = 5.3 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%) Frame = +2 Query: 254 LSILCESMACKECKKPSSSAWSSNWRP--LCWSSTLPSSLLLRYV 382 L +LC ++ K SS SS+ R LC+ STLP+ LL+RY+ Sbjct: 728 LPLLCLALT-KHTGFRRSSHISSDLRSIALCYLSTLPTPLLMRYI 771
>LITAF_HUMAN (Q99732) Lipopolysaccharide-induced tumor necrosis factor-alpha| factor (LPS-induced TNF-alpha factor) (p53-induced protein 7) (Small integral membrane protein of lysosome/late endosome) Length = 161 Score = 28.1 bits (61), Expect = 5.3 Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 2/50 (4%) Frame = +2 Query: 248 HPLSILCE--SMACKECKKPSSSAWSSNWRPLCWSSTLPSSLLLRYVGCC 391 HP++ L M C C K S S N L W S LL GCC Sbjct: 83 HPITFLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCGSLCLLGCIAGCC 132
>KRA53_HUMAN (Q6L8H2) Keratin-associated protein 5-3 (Keratin-associated protein| 5.3) (Ultrahigh sulfur keratin-associated protein 5.3) (Keratin-associated protein 5-9) (Keratin-associated protein 5.9) (UHS KerB-like) Length = 238 Score = 27.7 bits (60), Expect = 6.9 Identities = 21/69 (30%), Positives = 25/69 (36%), Gaps = 7/69 (10%) Frame = +2 Query: 179 KKKSPSESCCR*YCPCSGEVKQIHPL-------SILCESMACKECKKPSSSAWSSNWRPL 337 K SCC+ PC + P S C+S CK C SS +P Sbjct: 152 KPSCSQSSCCK---PCCSQSSCCKPCCCSSGCGSSCCQSSCCKPCCSQSSCC-----KPC 203 Query: 338 CWSSTLPSS 364 C SS SS Sbjct: 204 CCSSGCGSS 212
>DNAK_THETN (Q8RB68) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 606 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 5/45 (11%) Frame = +3 Query: 84 LSTGKNTRVDAIGSHNLSE-----VILQQGEFLECEKKKKAQVSL 203 L+TGK+ ++ GS NLSE +I + ++ E ++KK+ ++ + Sbjct: 462 LATGKSQQITITGSTNLSEEEIQRMINEAKQYEEQDRKKREEIEI 506
>CTRB_NEIMB (P32014) Capsule polysaccharide export inner-membrane protein ctrB| Length = 387 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Frame = +2 Query: 251 PLSILCESMACKECKKPSSSAWSSNWRPLCWSST-LPSSLLLRYVG 385 P+++ E+ A E KKP +W PL W + +P+ + L Y G Sbjct: 6 PVAVATETKA--ERKKPKKKSWIKKLSPLFWVTVIIPTVISLVYFG 49
>CTRB_NEIMA (P57034) Capsule polysaccharide export inner-membrane protein ctrB| Length = 387 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Frame = +2 Query: 251 PLSILCESMACKECKKPSSSAWSSNWRPLCWSST-LPSSLLLRYVG 385 P+++ E+ A E KKP +W PL W + +P+ + L Y G Sbjct: 6 PVAVATETKA--ERKKPKKKSWIKKLSPLFWVTVIIPTVISLVYFG 49
>NPT1_HUMAN (Q14916) Renal sodium-dependent phosphate transport protein 1| (Sodium/phosphate cotransporter 1) (Na(+)/PI cotransporter 1) (Renal sodium-phosphate transport protein 1) (Renal Na(+)-dependent phosphate cotransporter 1) (Solute carrier family 1 Length = 465 Score = 27.7 bits (60), Expect = 6.9 Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 20/93 (21%) Frame = -3 Query: 223 GAVLAATRLTWAFFFFSHSKNSPCCRITSER-----LCDPIASTRVFLPVDRNHHQSLTW 59 GA A L W F+ K+ PC I+ + L ++S+R LP+ W Sbjct: 204 GACGCAVCLLWFVLFYDDPKDHPCISISEKEYITSSLVQQVSSSRQSLPIKAILKSLPVW 263 Query: 58 ---------------YKLHALIFRTSLIYTNIK 5 L+ +F S+++ NIK Sbjct: 264 AISIGSFTFFWSHNIMTLYTPMFINSMLHVNIK 296
>LAMA3_MOUSE (Q61789) Laminin alpha-3 chain precursor (Nicein alpha subunit)| Length = 3333 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/41 (31%), Positives = 19/41 (46%) Frame = +2 Query: 224 CSGEVKQIHPLSILCESMACKECKKPSSSAWSSNWRPLCWS 346 C G HP L S+ +CK+ +S S +PL W+ Sbjct: 576 CQGSGSVCHPAGTLDSSLGYCQCKQHVASPTCSVCKPLYWN 616
>DHML_METEX (P00372) Methylamine dehydrogenase light chain precursor (EC| 1.4.99.3) (MADH) Length = 186 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/42 (30%), Positives = 19/42 (45%) Frame = +2 Query: 266 CESMACKECKKPSSSAWSSNWRPLCWSSTLPSSLLLRYVGCC 391 C + C P + SS+W C++ T S L+ Y CC Sbjct: 93 CSGGSLTSCP-PGTKLASSSWVASCYNPTDKQSYLISYRDCC 133
>SUIS_HUMAN (P14410) Sucrase-isomaltase, intestinal [Contains: Sucrase (EC| 3.2.1.48); Isomaltase (EC 3.2.1.10)] Length = 1826 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 6/53 (11%) Frame = -3 Query: 142 TSERLCDPIASTRVFLPVDRNH------HQSLTWYKLHALIFRTSLIYTNIKH 2 T+E LC F P RNH HQ ++ ++L+ ++S Y I++ Sbjct: 640 TTEELCRRWMQLGAFYPFSRNHNSDGYEHQDPAFFGQNSLLVKSSRQYLTIRY 692
>HMDH_ASPTE (Q9Y7D2) 3-hydroxy-3-methylglutaryl-coenzyme A reductase (EC| 1.1.1.34) (HMG-CoA reductase) Length = 1068 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/49 (28%), Positives = 24/49 (48%) Frame = -1 Query: 303 DGFLHSLHAIDSQRMDSGWICLTSPEQGQY*RQQDSLGLFFFSRIPKIH 157 DGFL ++ I S++ D W + E+G LG + S + ++H Sbjct: 142 DGFLQAVEIIPSEKEDDSWRLRSPREEGSPRSLGHWLGSSWLSFLHRVH 190 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,109,667 Number of Sequences: 219361 Number of extensions: 993692 Number of successful extensions: 2588 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 2515 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2588 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 1375720320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
