ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart28d10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC138197.3| Oryza sativa (japonica cultivar-group) chromosome... 98 3e-17
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 98 3e-17
3gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 98 3e-17
4emb|BX530030.12| Zebrafish DNA sequence from clone DKEY-38K9 in ... 44 0.34
5gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 42 1.3
6emb|BX053891.1|CNS09DQV Single read from an extremity of a full-... 42 1.3
7gb|AC093801.3| Homo sapiens BAC clone RP11-313E19 from 4, comple... 42 1.3
8ref|XM_415833.1| PREDICTED: Gallus gallus similar to RIKEN cDNA ... 40 5.3
9gb|AY454809.1| Papio papio clone 5 olfactory receptor gene, part... 40 5.3
10gb|AC021044.5| Arabidopsis thaliana chromosome I BAC F3H9 genomi... 40 5.3
11ref|XM_786536.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 5.3
12emb|CR523927.1| Gallus gallus finished cDNA, clone ChEST672l24 40 5.3
13emb|BX572621.7| Zebrafish DNA sequence from clone DKEY-34B22 in ... 40 5.3

>gb|AC138197.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055D24
              map C535, complete sequence
          Length = 174759

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 82/93 (88%)
 Strand = Plus / Plus

                                                                          
Query: 301    atcatcttctgcttggagcagcaattggcgccctttgtgctggagctcgaccctgccctc 360
              |||||||||| |||||||||||| |||| |||||||| |||  || | | ||||||||||
Sbjct: 112340 atcatcttctccttggagcagcatttggtgccctttgagctccaggttggccctgccctc 112399

                                               
Query: 361    cagcttgctcctccggtatgttggctgctgccg 393
              |||||||||||||||| ||||| ||||||||||
Sbjct: 112400 cagcttgctcctccggcatgttcgctgctgccg 112432



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 82/93 (88%)
 Strand = Plus / Minus

                                                                           
Query: 301     atcatcttctgcttggagcagcaattggcgccctttgtgctggagctcgaccctgccctc 360
               |||||||||| |||||||||||| |||| |||||||| |||  || | | ||||||||||
Sbjct: 8905887 atcatcttctccttggagcagcatttggtgccctttgagctccaggttggccctgccctc 8905828

                                                
Query: 361     cagcttgctcctccggtatgttggctgctgccg 393
               |||||||||||||||| ||||| ||||||||||
Sbjct: 8905827 cagcttgctcctccggcatgttcgctgctgccg 8905795



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 82/93 (88%)
 Strand = Plus / Minus

                                                                           
Query: 301     atcatcttctgcttggagcagcaattggcgccctttgtgctggagctcgaccctgccctc 360
               |||||||||| |||||||||||| |||| |||||||| |||  || | | ||||||||||
Sbjct: 8977550 atcatcttctccttggagcagcatttggtgccctttgagctccaggttggccctgccctc 8977491

                                                
Query: 361     cagcttgctcctccggtatgttggctgctgccg 393
               |||||||||||||||| ||||| ||||||||||
Sbjct: 8977490 cagcttgctcctccggcatgttcgctgctgccg 8977458



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>emb|BX530030.12| Zebrafish DNA sequence from clone DKEY-38K9 in linkage group 21,
             complete sequence
          Length = 180154

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 7     tgatattggtataaattaagct 28
             ||||||||||||||||||||||
Sbjct: 26951 tgatattggtataaattaagct 26972



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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 326     tggcgccctttgtgctggagctcga 350
               |||||||||||||||||| ||||||
Sbjct: 1689496 tggcgccctttgtgctggggctcga 1689520



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>emb|BX053891.1|CNS09DQV Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC31DC11 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 931

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 351 ccctgccctccagcttgctcc 371
           |||||||||||||||||||||
Sbjct: 161 ccctgccctccagcttgctcc 141



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>gb|AC093801.3| Homo sapiens BAC clone RP11-313E19 from 4, complete sequence
          Length = 126929

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 27     ctagttctgaatattaaagcatgca 51
              ||||||||||||||||||| |||||
Sbjct: 102850 ctagttctgaatattaaagtatgca 102874



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>ref|XM_415833.1| PREDICTED: Gallus gallus similar to RIKEN cDNA 4930563A03 gene
           (LOC417587), mRNA
          Length = 4042

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 248 catccgctgtccattctttg 267
           ||||||||||||||||||||
Sbjct: 700 catccgctgtccattctttg 681



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>gb|AY454809.1| Papio papio clone 5 olfactory receptor gene, partial cds
          Length = 658

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 293 aagaagccatcatcttctgc 312
           ||||||||||||||||||||
Sbjct: 257 aagaagccatcatcttctgc 238



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>gb|AC021044.5| Arabidopsis thaliana chromosome I BAC F3H9 genomic sequence, complete
             sequence
          Length = 121720

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 293   aagaagccatcatcttctgc 312
             ||||||||||||||||||||
Sbjct: 62827 aagaagccatcatcttctgc 62808



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>ref|XM_786536.1| PREDICTED: Strongylocentrotus purpuratus similar to 60S ribosomal
           protein L17 (L23) (Amino acid starvation-induced
           protein) (ASI) (LOC586769), mRNA
          Length = 631

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 297 agccatcatcttctgcttgg 316
           ||||||||||||||||||||
Sbjct: 556 agccatcatcttctgcttgg 537



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>emb|CR523927.1| Gallus gallus finished cDNA, clone ChEST672l24
          Length = 1741

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 248 catccgctgtccattctttg 267
           ||||||||||||||||||||
Sbjct: 223 catccgctgtccattctttg 204



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>emb|BX572621.7| Zebrafish DNA sequence from clone DKEY-34B22 in linkage group 5,
             complete sequence
          Length = 196336

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 224   tgttctggagaggtcaagca 243
             ||||||||||||||||||||
Sbjct: 42137 tgttctggagaggtcaagca 42156


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,300,740
Number of Sequences: 3902068
Number of extensions: 3300740
Number of successful extensions: 61398
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61344
Number of HSP's gapped (non-prelim): 54
length of query: 393
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 371
effective length of database: 17,147,199,772
effective search space: 6361611115412
effective search space used: 6361611115412
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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