Clone Name | rbart28d10 |
---|---|
Clone Library Name | barley_pub |
>gb|AC138197.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055D24 map C535, complete sequence Length = 174759 Score = 97.6 bits (49), Expect = 3e-17 Identities = 82/93 (88%) Strand = Plus / Plus Query: 301 atcatcttctgcttggagcagcaattggcgccctttgtgctggagctcgaccctgccctc 360 |||||||||| |||||||||||| |||| |||||||| ||| || | | |||||||||| Sbjct: 112340 atcatcttctccttggagcagcatttggtgccctttgagctccaggttggccctgccctc 112399 Query: 361 cagcttgctcctccggtatgttggctgctgccg 393 |||||||||||||||| ||||| |||||||||| Sbjct: 112400 cagcttgctcctccggcatgttcgctgctgccg 112432
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 97.6 bits (49), Expect = 3e-17 Identities = 82/93 (88%) Strand = Plus / Minus Query: 301 atcatcttctgcttggagcagcaattggcgccctttgtgctggagctcgaccctgccctc 360 |||||||||| |||||||||||| |||| |||||||| ||| || | | |||||||||| Sbjct: 8905887 atcatcttctccttggagcagcatttggtgccctttgagctccaggttggccctgccctc 8905828 Query: 361 cagcttgctcctccggtatgttggctgctgccg 393 |||||||||||||||| ||||| |||||||||| Sbjct: 8905827 cagcttgctcctccggcatgttcgctgctgccg 8905795
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 97.6 bits (49), Expect = 3e-17 Identities = 82/93 (88%) Strand = Plus / Minus Query: 301 atcatcttctgcttggagcagcaattggcgccctttgtgctggagctcgaccctgccctc 360 |||||||||| |||||||||||| |||| |||||||| ||| || | | |||||||||| Sbjct: 8977550 atcatcttctccttggagcagcatttggtgccctttgagctccaggttggccctgccctc 8977491 Query: 361 cagcttgctcctccggtatgttggctgctgccg 393 |||||||||||||||| ||||| |||||||||| Sbjct: 8977490 cagcttgctcctccggcatgttcgctgctgccg 8977458
>emb|BX530030.12| Zebrafish DNA sequence from clone DKEY-38K9 in linkage group 21, complete sequence Length = 180154 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 7 tgatattggtataaattaagct 28 |||||||||||||||||||||| Sbjct: 26951 tgatattggtataaattaagct 26972
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 326 tggcgccctttgtgctggagctcga 350 |||||||||||||||||| |||||| Sbjct: 1689496 tggcgccctttgtgctggggctcga 1689520
>emb|BX053891.1|CNS09DQV Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC31DC11 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 931 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 351 ccctgccctccagcttgctcc 371 ||||||||||||||||||||| Sbjct: 161 ccctgccctccagcttgctcc 141
>gb|AC093801.3| Homo sapiens BAC clone RP11-313E19 from 4, complete sequence Length = 126929 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 27 ctagttctgaatattaaagcatgca 51 ||||||||||||||||||| ||||| Sbjct: 102850 ctagttctgaatattaaagtatgca 102874
>ref|XM_415833.1| PREDICTED: Gallus gallus similar to RIKEN cDNA 4930563A03 gene (LOC417587), mRNA Length = 4042 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 catccgctgtccattctttg 267 |||||||||||||||||||| Sbjct: 700 catccgctgtccattctttg 681
>gb|AY454809.1| Papio papio clone 5 olfactory receptor gene, partial cds Length = 658 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 aagaagccatcatcttctgc 312 |||||||||||||||||||| Sbjct: 257 aagaagccatcatcttctgc 238
>gb|AC021044.5| Arabidopsis thaliana chromosome I BAC F3H9 genomic sequence, complete sequence Length = 121720 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 aagaagccatcatcttctgc 312 |||||||||||||||||||| Sbjct: 62827 aagaagccatcatcttctgc 62808
>ref|XM_786536.1| PREDICTED: Strongylocentrotus purpuratus similar to 60S ribosomal protein L17 (L23) (Amino acid starvation-induced protein) (ASI) (LOC586769), mRNA Length = 631 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 agccatcatcttctgcttgg 316 |||||||||||||||||||| Sbjct: 556 agccatcatcttctgcttgg 537
>emb|CR523927.1| Gallus gallus finished cDNA, clone ChEST672l24 Length = 1741 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 catccgctgtccattctttg 267 |||||||||||||||||||| Sbjct: 223 catccgctgtccattctttg 204
>emb|BX572621.7| Zebrafish DNA sequence from clone DKEY-34B22 in linkage group 5, complete sequence Length = 196336 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 tgttctggagaggtcaagca 243 |||||||||||||||||||| Sbjct: 42137 tgttctggagaggtcaagca 42156 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,300,740 Number of Sequences: 3902068 Number of extensions: 3300740 Number of successful extensions: 61398 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61344 Number of HSP's gapped (non-prelim): 54 length of query: 393 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 371 effective length of database: 17,147,199,772 effective search space: 6361611115412 effective search space used: 6361611115412 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)