ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart28d08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
2dbj|AP003685.3| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
3gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 46 0.100
4emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete ... 46 0.100
5dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 44 0.39
6gb|AE017221.1| Thermus thermophilus HB27, complete genome 44 0.39
7gb|AC159313.3| Mus musculus BAC clone RP23-99D11 from chromosome... 42 1.6
8gb|AY494599.1| Agrobacterium tumefaciens operon dnaKJ, complete ... 42 1.6
9gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 42 1.6
10dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
11dbj|AP003802.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
12dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 42 1.6
13dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 1.6
14gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 42 1.6
15ref|XM_512982.1| PREDICTED: Pan troglodytes similar to Apoptosis... 40 6.2
16ref|XM_512558.1| PREDICTED: Pan troglodytes similar to Apoptosis... 40 6.2
17gb|AC009388.5| Drosophila melanogaster clone BACR11P22, complete... 40 6.2
18ref|XM_475910.1| Oryza sativa (japonica cultivar-group), predic... 40 6.2
19gb|AC120889.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
20gb|AC164070.5| Mus musculus chromosome 7, clone RP24-292L1, comp... 40 6.2
21gb|AC164437.2| Mus musculus BAC clone RP23-105B9 from chromosome... 40 6.2
22gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
23gb|AC136905.6| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
24ref|XM_365739.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 6.2
25gb|AC098832.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
26gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 40 6.2
27gb|AC102524.11| Mus musculus chromosome 7, clone RP24-75A18, com... 40 6.2
28ref|XM_541726.2| PREDICTED: Canis familiaris similar to pleckstr... 40 6.2
29emb|AL137066.15| Human DNA sequence from clone RP11-10I9 on chro... 40 6.2
30emb|AL121827.34|HSA261N11 Human DNA sequence from clone RP11-261... 40 6.2
31gb|BC019705.1| Mus musculus, clone IMAGE:4500791, mRNA, partial cds 40 6.2
32gb|BC002744.2| Homo sapiens pleckstrin homology domain containin... 40 6.2
33emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete ... 40 6.2
34emb|BX640427.1| Bordetella parapertussis strain 12822, complete ... 40 6.2
35emb|BX640417.1| Bordetella pertussis strain Tohama I, complete g... 40 6.2
36emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete ... 40 6.2
37emb|CR615714.1| full-length cDNA clone CS0DI042YL01 of Placenta ... 40 6.2
38gb|DQ397572.1| Cenarchaeum symbiosum clone C09A12, complete sequ... 40 6.2
39emb|CR626406.1| full-length cDNA clone CS0DI043YP01 of Placenta ... 40 6.2
40emb|CR626339.1| full-length cDNA clone CS0DC014YB10 of Neuroblas... 40 6.2
41ref|NM_024310.2| Homo sapiens pleckstrin homology domain contain... 40 6.2
42emb|CR606040.1| full-length cDNA clone CS0DI014YI24 of Placenta ... 40 6.2
43ref|NM_170363.1| Drosophila melanogaster CG31054-PA (CG31054) mR... 40 6.2
44emb|CR602222.1| full-length cDNA clone CS0DC025YB02 of Neuroblas... 40 6.2
45dbj|AK027758.1| Homo sapiens cDNA FLJ14852 fis, clone PLACE1000786 40 6.2
46emb|CR591930.1| full-length cDNA clone CS0DI027YA24 of Placenta ... 40 6.2
47ref|NM_143348.2| Drosophila melanogaster CG4849-RA (CG4849), mRNA 40 6.2
48gb|AY089551.1| Drosophila melanogaster LD28793 full insert cDNA 40 6.2
49dbj|AK141246.1| Mus musculus ES cells cDNA, RIKEN full-length en... 40 6.2
50dbj|AK153648.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 40 6.2
51gb|AF434818.1|AF434818 Homo sapiens phafin 1 mRNA, complete cds 40 6.2
52gb|AC010644.7| Homo sapiens chromosome 19 clone LLNLR-258B1, com... 40 6.2
53dbj|AK032809.1| Mus musculus 12 days embryo male wolffian duct i... 40 6.2
54gb|AC154586.2| Mus musculus BAC clone RP23-362L12 from chromosom... 40 6.2
55dbj|AK040456.1| Mus musculus 0 day neonate thymus cDNA, RIKEN fu... 40 6.2
56dbj|AK054494.1| Mus musculus 2 days pregnant adult female ovary ... 40 6.2
57dbj|AK038175.1| Mus musculus 16 days neonate thymus cDNA, RIKEN ... 40 6.2
58dbj|AK030979.1| Mus musculus adult male thymus cDNA, RIKEN full-... 40 6.2
59dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
60dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
61gb|AC158224.6| Mus musculus chromosome 7, clone RP23-103H3, comp... 40 6.2
62gb|BC049239.1| Mus musculus, clone IMAGE:4500791, mRNA 40 6.2
63gb|BT003756.1| Drosophila melanogaster RE71343 full insert cDNA 40 6.2
64gb|AC104564.11| Homo sapiens chromosome 17, clone RP11-68I3, com... 40 6.2
65gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 6.2
66dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 40 6.2
67dbj|AK106699.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.2
68gb|AE003763.3| Drosophila melanogaster chromosome 3R, section 10... 40 6.2
69gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 6.2
70gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
71gb|BC018876.2| Homo sapiens pleckstrin homology domain containin... 40 6.2
72gb|U20824.1|EHVU20824 Equine herpesvirus 2, complete genome 40 6.2
73gb|AY037145.2| Homo sapiens apoptosis-inducing protein (APPD) mR... 40 6.2
74gb|AC171241.2| Mus musculus BAC clone RP23-94E5 from chromosome ... 40 6.2 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                            
Query: 163      tgttgaggagcgccaccctggtgtgcaggatgctccggaacaccttgtcgctgccgctct 222
                |||||||||| || |||||||||||||||||  ||| ||||||| ||||| |||||||||
Sbjct: 30343539 tgttgaggagagcgaccctggtgtgcaggattgtcctgaacaccctgtcgttgccgctct 30343480

                 
Query: 223      c 223
                |
Sbjct: 30343479 c 30343479



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 91/112 (81%)
 Strand = Plus / Minus

                                                                            
Query: 153      tgggtctggatgttgaggagcgccaccctggtgtgcaggatgctccggaacaccttgtcg 212
                ||||| || |||||||| || || |||||||| ||||  | ||||| |||||||||||||
Sbjct: 30340210 tgggtgtgtatgttgagcagtgcaaccctggtctgcacaaggctcctgaacaccttgtcg 30340151

                                                                    
Query: 213      ctgccgctctcgatctcggcggcgcacgcctcgacctcctcctgcctctcca 264
                |||||| | |||| |||  ||  |||| |||| | ||||||| |||||||||
Sbjct: 30340150 ctgccgttgtcgagctcatcgatgcactcctccagctcctccagcctctcca 30340099



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 57/69 (82%)
 Strand = Plus / Minus

                                                                            
Query: 156      gtctggatgttgaggagcgccaccctggtgtgcaggatgctccggaacaccttgtcgctg 215
                ||||| |||||||| || || ||||| ||||| || |||| || ||||||||||| || |
Sbjct: 30350965 gtctgaatgttgagcagtgcaacccttgtgtgaagaatgcccctgaacaccttgtggcag 30350906

                         
Query: 216      ccgctctcg 224
                | |||||||
Sbjct: 30350905 ctgctctcg 30350897



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 426      tcggcgagcaccccggacacctcgacttcggc 457
                |||||||| || |||||||||||||| |||||
Sbjct: 30343231 tcggcgaggacaccggacacctcgacctcggc 30343200
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>dbj|AP003685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0548E04
          Length = 138037

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                         
Query: 163   tgttgaggagcgccaccctggtgtgcaggatgctccggaacaccttgtcgctgccgctct 222
             |||||||||| || |||||||||||||||||  ||| ||||||| ||||| |||||||||
Sbjct: 90134 tgttgaggagagcgaccctggtgtgcaggattgtcctgaacaccctgtcgttgccgctct 90075

              
Query: 223   c 223
             |
Sbjct: 90074 c 90074



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 91/112 (81%)
 Strand = Plus / Minus

                                                                         
Query: 153   tgggtctggatgttgaggagcgccaccctggtgtgcaggatgctccggaacaccttgtcg 212
             ||||| || |||||||| || || |||||||| ||||  | ||||| |||||||||||||
Sbjct: 86805 tgggtgtgtatgttgagcagtgcaaccctggtctgcacaaggctcctgaacaccttgtcg 86746

                                                                 
Query: 213   ctgccgctctcgatctcggcggcgcacgcctcgacctcctcctgcctctcca 264
             |||||| | |||| |||  ||  |||| |||| | ||||||| |||||||||
Sbjct: 86745 ctgccgttgtcgagctcatcgatgcactcctccagctcctccagcctctcca 86694



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 57/69 (82%)
 Strand = Plus / Minus

                                                                         
Query: 156   gtctggatgttgaggagcgccaccctggtgtgcaggatgctccggaacaccttgtcgctg 215
             ||||| |||||||| || || ||||| ||||| || |||| || ||||||||||| || |
Sbjct: 97560 gtctgaatgttgagcagtgcaacccttgtgtgaagaatgcccctgaacaccttgtggcag 97501

                      
Query: 216   ccgctctcg 224
             | |||||||
Sbjct: 97500 ctgctctcg 97492



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 426   tcggcgagcaccccggacacctcgacttcggc 457
             |||||||| || |||||||||||||| |||||
Sbjct: 89826 tcggcgaggacaccggacacctcgacctcggc 89795
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 46.1 bits (23), Expect = 0.100
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 223     cgatctcggcggcgcacgcctcg 245
               |||||||||||||||||||||||
Sbjct: 1801843 cgatctcggcggcgcacgcctcg 1801821
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>emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete genome; segment 3/29
          Length = 314100

 Score = 46.1 bits (23), Expect = 0.100
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 418    ccacggcctcggcgagcaccccg 440
              |||||||||||||||||||||||
Sbjct: 305161 ccacggcctcggcgagcaccccg 305183
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 410     cgcggtggccacggcctcggcgagca 435
               |||||||||||| |||||||||||||
Sbjct: 1215230 cgcggtggccaccgcctcggcgagca 1215205
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 260     ctccagggcggccacctccttgtcct 285
               |||||||||| |||||||||||||||
Sbjct: 1757606 ctccagggcgtccacctccttgtcct 1757581



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 260    ctccagggcggccacctcct 279
              ||||||||||||||||||||
Sbjct: 489918 ctccagggcggccacctcct 489937
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>gb|AC159313.3| Mus musculus BAC clone RP23-99D11 from chromosome 9, complete sequence
          Length = 228299

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 7      aacaaaagcctttgctttgct 27
              |||||||||||||||||||||
Sbjct: 157453 aacaaaagcctttgctttgct 157473
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>gb|AY494599.1| Agrobacterium tumefaciens operon dnaKJ, complete sequence
          Length = 3135

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 392  ggcggcggacgcgcacgccgc 412
            |||||||||||||||||||||
Sbjct: 2320 ggcggcggacgcgcacgccgc 2340
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 217     cgctctcgatctcggcggcgc 237
               |||||||||||||||||||||
Sbjct: 4858479 cgctctcgatctcggcggcgc 4858459
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 383      ggcgaacacggcggcggacgc 403
                |||||||||||||||||||||
Sbjct: 15388635 ggcgaacacggcggcggacgc 15388615
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>dbj|AP003802.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1047_A06
          Length = 111673

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 383   ggcgaacacggcggcggacgc 403
             |||||||||||||||||||||
Sbjct: 95634 ggcgaacacggcggcggacgc 95614
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 416     ggccacggcctcggcgagcaccccg 440
               |||||||||| ||||||||||||||
Sbjct: 2311796 ggccacggccacggcgagcaccccg 2311772
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 221     ctcgatctcggcggcgcacgcctcgacct 249
               |||||||||||||| || |||||||||||
Sbjct: 7887114 ctcgatctcggcggtgcgcgcctcgacct 7887142



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 416     ggccacggcctcggcgagca 435
               ||||||||||||||||||||
Sbjct: 1612707 ggccacggcctcggcgagca 1612688
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 268     cggccacctccttgtcctcgtcgga 292
               |||||||||||| ||||||||||||
Sbjct: 1413423 cggccacctcctggtcctcgtcgga 1413447
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>ref|XM_512982.1| PREDICTED: Pan troglodytes similar to Apoptosis-inducing protein D
            (LOC456385), mRNA
          Length = 1758

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 274  cctccttgtcctcgtcggag 293
            ||||||||||||||||||||
Sbjct: 1681 cctccttgtcctcgtcggag 1662
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>ref|XM_512558.1| PREDICTED: Pan troglodytes similar to Apoptosis-inducing protein D
            (LOC455912), mRNA
          Length = 1803

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 274  cctccttgtcctcgtcggag 293
            ||||||||||||||||||||
Sbjct: 1726 cctccttgtcctcgtcggag 1707
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>gb|AC009388.5| Drosophila melanogaster clone BACR11P22, complete sequence
          Length = 172362

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 266   ggcggccacctccttgtcctcgtc 289
             ||||| ||||||||||||||||||
Sbjct: 75692 ggcggtcacctccttgtcctcgtc 75669



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 266   ggcggccacctccttgtcctcgtc 289
             ||||| ||||||||||||||||||
Sbjct: 73046 ggcggtcacctccttgtcctcgtc 73023
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>ref|XM_475910.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1224

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 391 cggcggcggacgcgcacgccgcgg 414
           ||||||||||||||| ||||||||
Sbjct: 241 cggcggcggacgcgcccgccgcgg 218
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>gb|AC120889.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0018K14, complete sequence
          Length = 152725

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 268   cggccacctccttgtcctcgtcgg 291
             |||||||||||| |||||||||||
Sbjct: 51195 cggccacctcctcgtcctcgtcgg 51218
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>gb|AC164070.5| Mus musculus chromosome 7, clone RP24-292L1, complete sequence
          Length = 200080

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   cagcaggtctgggtctggat 163
             ||||||||||||||||||||
Sbjct: 16159 cagcaggtctgggtctggat 16140
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>gb|AC164437.2| Mus musculus BAC clone RP23-105B9 from chromosome 14, complete sequence
          Length = 205044

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 367    acacggcctccacggaggcgaacacggc 394
              |||||||  |||||||||||||||||||
Sbjct: 193336 acacggcagccacggaggcgaacacggc 193363
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>gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1735_C10,
              complete sequence
          Length = 187034

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 391    cggcggcggacgcgcacgccgcgg 414
              ||||||||||||||| ||||||||
Sbjct: 166858 cggcggcggacgcgcccgccgcgg 166881
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>gb|AC136905.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0064E13,
              complete sequence
          Length = 150158

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 268    cggccacctccttgtcctcgtcgg 291
              |||||||||||| |||||||||||
Sbjct: 140385 cggccacctcctcgtcctcgtcgg 140408
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>ref|XM_365739.1| Magnaporthe grisea 70-15 hypothetical protein (MG02441.4) partial
           mRNA
          Length = 1794

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 242 ctcgacctcctcctgcctct 261
           ||||||||||||||||||||
Sbjct: 310 ctcgacctcctcctgcctct 329
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>gb|AC098832.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1268_B08,
             complete sequence
          Length = 119500

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 391   cggcggcggacgcgcacgccgcgg 414
             ||||||||||||||| ||||||||
Sbjct: 17540 cggcggcggacgcgcccgccgcgg 17563
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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 399    gacgcgcacgccgcggtggccacg 422
              ||||||| ||||||||||||||||
Sbjct: 530728 gacgcgcccgccgcggtggccacg 530705
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>gb|AC102524.11| Mus musculus chromosome 7, clone RP24-75A18, complete sequence
          Length = 193924

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   cagcaggtctgggtctggat 163
             ||||||||||||||||||||
Sbjct: 20198 cagcaggtctgggtctggat 20179
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>ref|XM_541726.2| PREDICTED: Canis familiaris similar to pleckstrin homology domain
           containing, family F (with FYVE domain) member 1
           (LOC484612), mRNA
          Length = 1013

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 274 cctccttgtcctcgtcggag 293
           ||||||||||||||||||||
Sbjct: 936 cctccttgtcctcgtcggag 917
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>emb|AL137066.15| Human DNA sequence from clone RP11-10I9 on chromosome 9 Contains the 5'
             end of the gene for a novel protein similar to spermatid
             WD-repeat protein (FLJ90410, FLJ35921), the gene for a
             novel protein similar to B-box and SPRY-domain containing
             protein (BSPRY) (FLJ20150), a novel gene (FLJ39748), a
             novel gene, the ALAD gene for aminolevulinate delta-
             dehydratase (ALADH), the POLE3 gene for the polymerase
             (DNA directed) epsilon 3 (p17 subunit) (p17, YBL1, Ybl1,
             CHRAC17, CHARAC17), the 5' end of the RGS3 gene for the
             regulator of G-protein signalling 3 (C2PA, RGP3, FLJ20370,
             PDZ-RGS3) and six CpG islands, complete sequence
          Length = 137718

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 260   ctccagggcggccacctccttgtc 283
             |||||||| |||||||||||||||
Sbjct: 23215 ctccagggtggccacctccttgtc 23238
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>emb|AL121827.34|HSA261N11 Human DNA sequence from clone RP11-261N11 on chromosome 20, complete
             sequence
          Length = 184223

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 253   cctgcctctccagggcggccacct 276
             ||||||||||||||||||| ||||
Sbjct: 19553 cctgcctctccagggcggcgacct 19576
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>gb|BC019705.1| Mus musculus, clone IMAGE:4500791, mRNA, partial cds
          Length = 2270

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 367 acacggcctccacggaggcgaacacggc 394
           |||||||  |||||||||||||||||||
Sbjct: 265 acacggcagccacggaggcgaacacggc 238
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>gb|BC002744.2| Homo sapiens pleckstrin homology domain containing, family F (with
           FYVE domain) member 1, mRNA (cDNA clone MGC:4090
           IMAGE:3628796), complete cds
          Length = 1727

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 274 cctccttgtcctcgtcggag 293
           ||||||||||||||||||||
Sbjct: 819 cctccttgtcctcgtcggag 800
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>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16
          Length = 349008

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 399    gacgcgcacgccgcggtggc 418
              ||||||||||||||||||||
Sbjct: 213846 gacgcgcacgccgcggtggc 213865
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>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14
          Length = 348997

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 399    gacgcgcacgccgcggtggc 418
              ||||||||||||||||||||
Sbjct: 126360 gacgcgcacgccgcggtggc 126379
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>emb|BX640417.1| Bordetella pertussis strain Tohama I, complete genome; segment 7/12
          Length = 348934

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 399    gacgcgcacgccgcggtggc 418
              ||||||||||||||||||||
Sbjct: 151881 gacgcgcacgccgcggtggc 151862
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>emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete genome; segment 12/29
          Length = 276800

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 231   gcggcgcacgcctcgacctcctcc 254
             ||||||||||||||||||| ||||
Sbjct: 66409 gcggcgcacgcctcgacctgctcc 66432
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>emb|CR615714.1| full-length cDNA clone CS0DI042YL01 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1602

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 274 cctccttgtcctcgtcggag 293
           ||||||||||||||||||||
Sbjct: 781 cctccttgtcctcgtcggag 762
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>gb|DQ397572.1| Cenarchaeum symbiosum clone C09A12, complete sequence
          Length = 43887

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 400   acgcgcacgccgcggtggcc 419
             ||||||||||||||||||||
Sbjct: 19138 acgcgcacgccgcggtggcc 19119
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>emb|CR626406.1| full-length cDNA clone CS0DI043YP01 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1593

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 274 cctccttgtcctcgtcggag 293
           ||||||||||||||||||||
Sbjct: 781 cctccttgtcctcgtcggag 762
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>emb|CR626339.1| full-length cDNA clone CS0DC014YB10 of Neuroblastoma Cot
           25-normalized of Homo sapiens (human)
          Length = 1704

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 274 cctccttgtcctcgtcggag 293
           ||||||||||||||||||||
Sbjct: 865 cctccttgtcctcgtcggag 846
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>ref|NM_024310.2| Homo sapiens pleckstrin homology domain containing, family F (with
            FYVE domain) member 1 (PLEKHF1), mRNA
          Length = 2094

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 274  cctccttgtcctcgtcggag 293
            ||||||||||||||||||||
Sbjct: 1229 cctccttgtcctcgtcggag 1210
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>emb|CR606040.1| full-length cDNA clone CS0DI014YI24 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1686

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 274 cctccttgtcctcgtcggag 293
           ||||||||||||||||||||
Sbjct: 849 cctccttgtcctcgtcggag 830
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>ref|NM_170363.1| Drosophila melanogaster CG31054-PA (CG31054) mRNA, complete cds
          Length = 521

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 266 ggcggccacctccttgtcctcgtc 289
           ||||| ||||||||||||||||||
Sbjct: 320 ggcggtcacctccttgtcctcgtc 297
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>emb|CR602222.1| full-length cDNA clone CS0DC025YB02 of Neuroblastoma Cot
           25-normalized of Homo sapiens (human)
          Length = 1657

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 274 cctccttgtcctcgtcggag 293
           ||||||||||||||||||||
Sbjct: 814 cctccttgtcctcgtcggag 795
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>dbj|AK027758.1| Homo sapiens cDNA FLJ14852 fis, clone PLACE1000786
          Length = 1696

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 274 cctccttgtcctcgtcggag 293
           ||||||||||||||||||||
Sbjct: 824 cctccttgtcctcgtcggag 805
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>emb|CR591930.1| full-length cDNA clone CS0DI027YA24 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1669

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 274 cctccttgtcctcgtcggag 293
           ||||||||||||||||||||
Sbjct: 817 cctccttgtcctcgtcggag 798
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>ref|NM_143348.2| Drosophila melanogaster CG4849-RA (CG4849), mRNA
          Length = 3130

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 266 ggcggccacctccttgtcctcgtc 289
           ||||| ||||||||||||||||||
Sbjct: 320 ggcggtcacctccttgtcctcgtc 297
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>gb|AY089551.1| Drosophila melanogaster LD28793 full insert cDNA
          Length = 3119

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 266 ggcggccacctccttgtcctcgtc 289
           ||||| ||||||||||||||||||
Sbjct: 299 ggcggtcacctccttgtcctcgtc 276
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>dbj|AK141246.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library,
           clone:C330036L16 product:hypothetical protein, full
           insert sequence
          Length = 3003

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 367 acacggcctccacggaggcgaacacggc 394
           |||||||  |||||||||||||||||||
Sbjct: 211 acacggcagccacggaggcgaacacggc 184
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>dbj|AK153648.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
           library, clone:A630031D10 product:hypothetical protein,
           full insert sequence
          Length = 1939

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 367 acacggcctccacggaggcgaacacggc 394
           |||||||  |||||||||||||||||||
Sbjct: 166 acacggcagccacggaggcgaacacggc 139
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>gb|AF434818.1|AF434818 Homo sapiens phafin 1 mRNA, complete cds
          Length = 840

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 274 cctccttgtcctcgtcggag 293
           ||||||||||||||||||||
Sbjct: 763 cctccttgtcctcgtcggag 744
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>gb|AC010644.7| Homo sapiens chromosome 19 clone LLNLR-258B1, complete sequence
          Length = 36957

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 274   cctccttgtcctcgtcggag 293
             ||||||||||||||||||||
Sbjct: 11017 cctccttgtcctcgtcggag 10998
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>dbj|AK032809.1| Mus musculus 12 days embryo male wolffian duct includes surrounding
           region cDNA, RIKEN full-length enriched library,
           clone:6720456H20 product:similar to KAIA4653 PROTEIN
           [Homo sapiens], full insert sequence
          Length = 2953

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 367 acacggcctccacggaggcgaacacggc 394
           |||||||  |||||||||||||||||||
Sbjct: 181 acacggcagccacggaggcgaacacggc 154
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>gb|AC154586.2| Mus musculus BAC clone RP23-362L12 from chromosome 16, complete
             sequence
          Length = 224155

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 249   tcctcctgcctctccagggcggcc 272
             ||||||||||||| ||||||||||
Sbjct: 87503 tcctcctgcctctgcagggcggcc 87526
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>dbj|AK040456.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched
           library, clone:A430099B18 product:similar to KAIA4653
           PROTEIN [Homo sapiens], full insert sequence
          Length = 1826

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 367 acacggcctccacggaggcgaacacggc 394
           |||||||  |||||||||||||||||||
Sbjct: 169 acacggcagccacggaggcgaacacggc 142
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>dbj|AK054494.1| Mus musculus 2 days pregnant adult female ovary cDNA, RIKEN
           full-length enriched library, clone:E330032K03
           product:similar to KAIA4653 PROTEIN [Homo sapiens], full
           insert sequence
          Length = 2732

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 367 acacggcctccacggaggcgaacacggc 394
           |||||||  |||||||||||||||||||
Sbjct: 183 acacggcagccacggaggcgaacacggc 156
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>dbj|AK038175.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length
           enriched library, clone:A130084F23 product:hypothetical
           protein, full insert sequence
          Length = 3002

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 367 acacggcctccacggaggcgaacacggc 394
           |||||||  |||||||||||||||||||
Sbjct: 166 acacggcagccacggaggcgaacacggc 139
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>dbj|AK030979.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched
           library, clone:5830474G03 product:unclassifiable, full
           insert sequence
          Length = 2150

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 367 acacggcctccacggaggcgaacacggc 394
           |||||||  |||||||||||||||||||
Sbjct: 166 acacggcagccacggaggcgaacacggc 139
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 268      cggccacctccttgtcctcgtcgg 291
                |||||||||||| |||||||||||
Sbjct: 20131176 cggccacctcctcgtcctcgtcgg 20131199
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 391      cggcggcggacgcgcacgccgcgg 414
                ||||||||||||||| ||||||||
Sbjct: 28382616 cggcggcggacgcgcccgccgcgg 28382639
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>gb|AC158224.6| Mus musculus chromosome 7, clone RP23-103H3, complete sequence
          Length = 224545

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 144    cagcaggtctgggtctggat 163
              ||||||||||||||||||||
Sbjct: 158713 cagcaggtctgggtctggat 158694
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>gb|BC049239.1| Mus musculus, clone IMAGE:4500791, mRNA
          Length = 2270

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 367 acacggcctccacggaggcgaacacggc 394
           |||||||  |||||||||||||||||||
Sbjct: 265 acacggcagccacggaggcgaacacggc 238
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>gb|BT003756.1| Drosophila melanogaster RE71343 full insert cDNA
          Length = 3136

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 266 ggcggccacctccttgtcctcgtc 289
           ||||| ||||||||||||||||||
Sbjct: 320 ggcggtcacctccttgtcctcgtc 297
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>gb|AC104564.11| Homo sapiens chromosome 17, clone RP11-68I3, complete sequence
          Length = 173058

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     aaacaaaagcctttgctttg 25
             ||||||||||||||||||||
Sbjct: 29253 aaacaaaagcctttgctttg 29234
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 217     cgctctcgatctcggcggcg 236
               ||||||||||||||||||||
Sbjct: 4445123 cgctctcgatctcggcggcg 4445142



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 393     gcggcggacgcgcacgccgcggtg 416
               ||||||| ||||||||||||||||
Sbjct: 3179180 gcggcggccgcgcacgccgcggtg 3179203
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 260    ctccagggcggccacctcct 279
              ||||||||||||||||||||
Sbjct: 818838 ctccagggcggccacctcct 818857
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>dbj|AK106699.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-E01, full
           insert sequence
          Length = 1526

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 391 cggcggcggacgcgcacgccgcgg 414
           ||||||||||||||| ||||||||
Sbjct: 325 cggcggcggacgcgcccgccgcgg 302
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>gb|AE003763.3| Drosophila melanogaster chromosome 3R, section 101 of 118 of the
             complete sequence
          Length = 206189

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 266   ggcggccacctccttgtcctcgtc 289
             ||||| ||||||||||||||||||
Sbjct: 71468 ggcggtcacctccttgtcctcgtc 71445



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 266   ggcggccacctccttgtcctcgtc 289
             ||||| ||||||||||||||||||
Sbjct: 68822 ggcggtcacctccttgtcctcgtc 68799
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 410     cgcggtggccacggcctcggcgagcacc 437
               |||||||||||| ||||||||| |||||
Sbjct: 1380766 cgcggtggccaccgcctcggcgggcacc 1380739
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 268      cggccacctccttgtcctcgtcgg 291
                |||||||||||| |||||||||||
Sbjct: 20416275 cggccacctcctcgtcctcgtcgg 20416298
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>gb|BC018876.2| Homo sapiens pleckstrin homology domain containing, family F (with
           FYVE domain) member 1, mRNA (cDNA clone IMAGE:3629311)
          Length = 1728

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 274 cctccttgtcctcgtcggag 293
           ||||||||||||||||||||
Sbjct: 819 cctccttgtcctcgtcggag 800
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>gb|U20824.1|EHVU20824 Equine herpesvirus 2, complete genome
          Length = 184427

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 258    ctctccagggcggccacctc 277
              ||||||||||||||||||||
Sbjct: 135170 ctctccagggcggccacctc 135189
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>gb|AY037145.2| Homo sapiens apoptosis-inducing protein (APPD) mRNA, complete cds
          Length = 2094

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 274  cctccttgtcctcgtcggag 293
            ||||||||||||||||||||
Sbjct: 1229 cctccttgtcctcgtcggag 1210
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>gb|AC171241.2| Mus musculus BAC clone RP23-94E5 from chromosome 14, complete sequence
          Length = 244795

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 367    acacggcctccacggaggcgaacacggc 394
              |||||||  |||||||||||||||||||
Sbjct: 244641 acacggcagccacggaggcgaacacggc 244614


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,974,869
Number of Sequences: 3902068
Number of extensions: 3974869
Number of successful extensions: 93178
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91202
Number of HSP's gapped (non-prelim): 1976
length of query: 457
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 435
effective length of database: 17,147,199,772
effective search space: 7459031900820
effective search space used: 7459031900820
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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