Clone Name | rbart28d04 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | CHIT2_TULBA (Q7M443) Chitinase 2 (EC 3.2.1.14) (Tulip bulb chiti... | 49 | 3e-06 | 2 | CHIT1_TULBA (Q9SLP4) Chitinase 1 precursor (EC 3.2.1.14) (Tulip ... | 47 | 1e-05 | 3 | SIMA_DROME (Q24167) Protein similar | 30 | 1.6 | 4 | GYRB_BUCAI (P57126) DNA gyrase subunit B (EC 5.99.1.3) | 29 | 2.7 | 5 | HEMH_BOVIN (P22600) Ferrochelatase, mitochondrial precursor (EC ... | 28 | 8.0 | 6 | NU5M_CRYNV (Q85T01) NADH-ubiquinone oxidoreductase chain 5 (EC 1... | 28 | 8.0 |
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>CHIT2_TULBA (Q7M443) Chitinase 2 (EC 3.2.1.14) (Tulip bulb chitinase-2) (TBC-2)| Length = 275 Score = 48.9 bits (115), Expect = 3e-06 Identities = 24/39 (61%), Positives = 30/39 (76%), Gaps = 2/39 (5%) Frame = -3 Query: 269 ACRTLQEQGKLYGIFVWAADHS--RNQGFKYETQSQALL 159 AC L++QGKL+GIFVW+AD S N FKYE Q+Q+LL Sbjct: 235 ACSILKKQGKLHGIFVWSADDSLMSNDVFKYEMQAQSLL 273
>CHIT1_TULBA (Q9SLP4) Chitinase 1 precursor (EC 3.2.1.14) (Tulip bulb| chitinase-1) (TBC-1) Length = 314 Score = 47.0 bits (110), Expect = 1e-05 Identities = 22/39 (56%), Positives = 30/39 (76%), Gaps = 2/39 (5%) Frame = -3 Query: 269 ACRTLQEQGKLYGIFVWAADHS--RNQGFKYETQSQALL 159 AC L++QGKL+GIFVW+AD S N F+YE Q+Q++L Sbjct: 261 ACSILKKQGKLHGIFVWSADDSLMSNNVFRYEMQAQSML 299
>SIMA_DROME (Q24167) Protein similar| Length = 1507 Score = 30.0 bits (66), Expect = 1.6 Identities = 17/49 (34%), Positives = 28/49 (57%) Frame = +2 Query: 104 NQFTQT*KLGLISKRGHQSTGPATGSRT*ILGSWNGLQPKQKCRKACPA 250 N + Q + L+ KR + S GP T + + GS +GL+P++K K+ A Sbjct: 524 NPYKQILQAELLIKRENHSPGPRTITAQLLSGSSSGLRPEEKRPKSVTA 572
>GYRB_BUCAI (P57126) DNA gyrase subunit B (EC 5.99.1.3)| Length = 803 Score = 29.3 bits (64), Expect = 2.7 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%) Frame = +1 Query: 10 YALLLRKNRAR*TIRPTIKI--YAHFIPYDFTHKSIYS 117 Y++ +++N + PTIKI YAH+ YDF + + S Sbjct: 646 YSIEIKENLDKNIFEPTIKISRYAHYTKYDFKEEFLKS 683
>HEMH_BOVIN (P22600) Ferrochelatase, mitochondrial precursor (EC 4.99.1.1)| (Protoheme ferro-lyase) (Heme synthetase) Length = 416 Score = 27.7 bits (60), Expect = 8.0 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = +1 Query: 148 GASVNRACDWVSYLNPWFLEWSAAQTKMP 234 GA+V R D + Y NP+ L W + MP Sbjct: 274 GATVQRVMDKLGYSNPYRLVWQSKVGPMP 302
>NU5M_CRYNV (Q85T01) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3)| Length = 662 Score = 27.7 bits (60), Expect = 8.0 Identities = 11/24 (45%), Positives = 17/24 (70%) Frame = +3 Query: 129 WD*LVSGGISQQGLRLGLVLESLV 200 WD L +G I + GLR+GLV+ ++ Sbjct: 556 WDALYNGLIIESGLRIGLVISKVI 579 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,435,013 Number of Sequences: 219361 Number of extensions: 680310 Number of successful extensions: 1558 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 1553 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1558 length of database: 80,573,946 effective HSP length: 66 effective length of database: 66,096,120 effective search space used: 1586306880 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)