ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart28d04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CHIT2_TULBA (Q7M443) Chitinase 2 (EC 3.2.1.14) (Tulip bulb chiti... 49 3e-06
2CHIT1_TULBA (Q9SLP4) Chitinase 1 precursor (EC 3.2.1.14) (Tulip ... 47 1e-05
3SIMA_DROME (Q24167) Protein similar 30 1.6
4GYRB_BUCAI (P57126) DNA gyrase subunit B (EC 5.99.1.3) 29 2.7
5HEMH_BOVIN (P22600) Ferrochelatase, mitochondrial precursor (EC ... 28 8.0
6NU5M_CRYNV (Q85T01) NADH-ubiquinone oxidoreductase chain 5 (EC 1... 28 8.0

>CHIT2_TULBA (Q7M443) Chitinase 2 (EC 3.2.1.14) (Tulip bulb chitinase-2) (TBC-2)|
          Length = 275

 Score = 48.9 bits (115), Expect = 3e-06
 Identities = 24/39 (61%), Positives = 30/39 (76%), Gaps = 2/39 (5%)
 Frame = -3

Query: 269 ACRTLQEQGKLYGIFVWAADHS--RNQGFKYETQSQALL 159
           AC  L++QGKL+GIFVW+AD S   N  FKYE Q+Q+LL
Sbjct: 235 ACSILKKQGKLHGIFVWSADDSLMSNDVFKYEMQAQSLL 273



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>CHIT1_TULBA (Q9SLP4) Chitinase 1 precursor (EC 3.2.1.14) (Tulip bulb|
           chitinase-1) (TBC-1)
          Length = 314

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 22/39 (56%), Positives = 30/39 (76%), Gaps = 2/39 (5%)
 Frame = -3

Query: 269 ACRTLQEQGKLYGIFVWAADHS--RNQGFKYETQSQALL 159
           AC  L++QGKL+GIFVW+AD S   N  F+YE Q+Q++L
Sbjct: 261 ACSILKKQGKLHGIFVWSADDSLMSNNVFRYEMQAQSML 299



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>SIMA_DROME (Q24167) Protein similar|
          Length = 1507

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = +2

Query: 104 NQFTQT*KLGLISKRGHQSTGPATGSRT*ILGSWNGLQPKQKCRKACPA 250
           N + Q  +  L+ KR + S GP T +   + GS +GL+P++K  K+  A
Sbjct: 524 NPYKQILQAELLIKRENHSPGPRTITAQLLSGSSSGLRPEEKRPKSVTA 572



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>GYRB_BUCAI (P57126) DNA gyrase subunit B (EC 5.99.1.3)|
          Length = 803

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +1

Query: 10  YALLLRKNRAR*TIRPTIKI--YAHFIPYDFTHKSIYS 117
           Y++ +++N  +    PTIKI  YAH+  YDF  + + S
Sbjct: 646 YSIEIKENLDKNIFEPTIKISRYAHYTKYDFKEEFLKS 683



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>HEMH_BOVIN (P22600) Ferrochelatase, mitochondrial precursor (EC 4.99.1.1)|
           (Protoheme ferro-lyase) (Heme synthetase)
          Length = 416

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 148 GASVNRACDWVSYLNPWFLEWSAAQTKMP 234
           GA+V R  D + Y NP+ L W +    MP
Sbjct: 274 GATVQRVMDKLGYSNPYRLVWQSKVGPMP 302



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>NU5M_CRYNV (Q85T01) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3)|
          Length = 662

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 129 WD*LVSGGISQQGLRLGLVLESLV 200
           WD L +G I + GLR+GLV+  ++
Sbjct: 556 WDALYNGLIIESGLRIGLVISKVI 579


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,435,013
Number of Sequences: 219361
Number of extensions: 680310
Number of successful extensions: 1558
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1558
length of database: 80,573,946
effective HSP length: 66
effective length of database: 66,096,120
effective search space used: 1586306880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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