ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart28d04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_196494.1| Oryza sativa (japonica cultivar-group) putative... 72 1e-09
2gb|AF350426.1| Oryza sativa (japonica cultivar-group) class III ... 72 1e-09
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
4gb|AF330230.1| Oryza sativa chitinase mRNA, partial cds 72 1e-09
5gb|AF229187.1|AF229187 Oryza sativa subsp. japonica BAC clone nb... 72 1e-09
6dbj|AK071453.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 1e-09
7dbj|AK061215.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 1e-09
8gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 72 1e-09
9gb|AC090889.3| Canis familiaris clone RP81-156O18, complete sequ... 44 0.23
10gb|AC131269.3| Homo sapiens chromosome 8, clone RP11-416I21, com... 42 0.90
11gb|AC130360.4| Homo sapiens chromosome 8, clone RP11-287P18, com... 42 0.90
12gb|AF252831.2| Homo sapiens chromosome 8 clone SCb-177k12 map 8p... 42 0.90
13gb|AC105214.6| Homo sapiens chromosome 8, clone RP11-354G4, comp... 42 0.90
14gb|AC026698.6| Homo sapiens chromosome 5 clone CTC-457H17, compl... 42 0.90
15gb|AC005406.2| Homo sapiens clone b128f11, complete sequence 42 0.90
16gb|AC130366.5| Homo sapiens chromosome 8, clone RP11-1236K1, com... 42 0.90
17gb|AC010598.6| Homo sapiens chromosome 5 clone CTC-560O9, comple... 42 0.90
18gb|AC130339.12| Homo sapiens chromosome 8, clone RP13-941O14, co... 42 0.90
19gb|AC134683.9| Homo sapiens chromosome 8, clone RP11-1175L4, com... 42 0.90
20gb|AC134395.7| Homo sapiens chromosome 8, clone RP11-739E3, comp... 42 0.90
21gb|AC130379.8| Homo sapiens chromosome 17, clone RP13-383M5, com... 42 0.90
22gb|AC130365.5| Homo sapiens chromosome 8, clone RP11-1195F20, co... 42 0.90
23gb|AC117621.7| Mus musculus chromosome 8, clone RP23-114B10, com... 40 3.6
24emb|Z78421.1|HSN121E8 Human DNA sequence from clone LL22NC03-121... 40 3.6
25emb|AL139818.15| Human DNA sequence from clone RP11-311B18 on ch... 40 3.6
26emb|AL138772.8| Human DNA sequence from clone RP4-576A20 on chro... 40 3.6
27gb|AC162797.6| Mus musculus chromosome 8, clone RP23-293E17, com... 40 3.6
28gb|AC131956.1| Homo sapiens BAC clone RP11-793B23 from 4, comple... 40 3.6
29gb|AF279874.3| Homo sapiens chromosome 8 clone CTD-2351C9 map q2... 40 3.6
30gb|AC171557.7| Mus musculus chromosome 7, clone RP24-62E17, comp... 40 3.6
31emb|CR394550.5| Zebrafish DNA sequence from clone CH211-231O11 i... 40 3.6
32gb|AC122424.4| Mus musculus BAC clone RP24-173E19 from 8, comple... 40 3.6
33gb|AC142262.3| Mus musculus BAC clone RP24-486I4 from 8, complet... 40 3.6
34gb|AC103359.6| Mus musculus chromosome 8, clone RP24-365B9, comp... 40 3.6
35emb|AL592224.17| Mouse DNA sequence from clone RP23-174G1 on chr... 40 3.6 
>ref|NM_196494.1| Oryza sativa (japonica cultivar-group) putative class III chitinase
           RCB4 (OSJNBa0032I20.7), mRNA
          Length = 924

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 78/92 (84%)
 Strand = Plus / Minus

                                                                       
Query: 178 gtctcgtacttgaatccttggttcctggaatggtctgcagcccaaacaaaaatgccgtaa 237
           ||||| |||||||| |||||| |||||||||| || |||||||| |  || |||||||| 
Sbjct: 881 gtctcatacttgaacccttggctcctggaatgatcagcagcccagatgaagatgccgtac 822

                                           
Query: 238 agcttgccctgctcctgcaaagtccggcaagc 269
           ||||| |||| || ||||| ||||||||||||
Sbjct: 821 agcttcccctccttctgcagagtccggcaagc 790
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>gb|AF350426.1| Oryza sativa (japonica cultivar-group) class III chitinase RCB4
           (Rcb4) mRNA, complete cds
          Length = 1158

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 78/92 (84%)
 Strand = Plus / Minus

                                                                       
Query: 178 gtctcgtacttgaatccttggttcctggaatggtctgcagcccaaacaaaaatgccgtaa 237
           ||||| |||||||| |||||| |||||||||| || |||||||| |  || |||||||| 
Sbjct: 933 gtctcatacttgaacccttggctcctggaatgatcagcagcccagatgaagatgccgtac 874

                                           
Query: 238 agcttgccctgctcctgcaaagtccggcaagc 269
           ||||| |||| || ||||| ||||||||||||
Sbjct: 873 agcttcccctccttctgcagagtccggcaagc 842
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 78/92 (84%)
 Strand = Plus / Minus

                                                                            
Query: 178      gtctcgtacttgaatccttggttcctggaatggtctgcagcccaaacaaaaatgccgtaa 237
                ||||| |||||||| |||||| |||||||||| || |||||||| |  || |||||||| 
Sbjct: 14045724 gtctcatacttgaacccttggctcctggaatgatcagcagcccagatgaagatgccgtac 14045665

                                                
Query: 238      agcttgccctgctcctgcaaagtccggcaagc 269
                ||||| |||| || ||||| ||||||||||||
Sbjct: 14045664 agcttcccctccttctgcagagtccggcaagc 14045633
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>gb|AF330230.1| Oryza sativa chitinase mRNA, partial cds
          Length = 941

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 78/92 (84%)
 Strand = Plus / Minus

                                                                       
Query: 178 gtctcgtacttgaatccttggttcctggaatggtctgcagcccaaacaaaaatgccgtaa 237
           ||||| |||||||| |||||| |||||||||| || |||||||| |  || |||||||| 
Sbjct: 806 gtctcatacttgaacccttggctcctggaatgatcagcagcccagatgaagatgccgtac 747

                                           
Query: 238 agcttgccctgctcctgcaaagtccggcaagc 269
           ||||| |||| || ||||| ||||||||||||
Sbjct: 746 agcttcccctccttctgcagagtccggcaagc 715
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>gb|AF229187.1|AF229187 Oryza sativa subsp. japonica BAC clone nbxb0032I20, complete sequence
          Length = 144651

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 78/92 (84%)
 Strand = Plus / Minus

                                                                         
Query: 178   gtctcgtacttgaatccttggttcctggaatggtctgcagcccaaacaaaaatgccgtaa 237
             ||||| |||||||| |||||| |||||||||| || |||||||| |  || |||||||| 
Sbjct: 61853 gtctcatacttgaacccttggctcctggaatgatcagcagcccagatgaagatgccgtac 61794

                                             
Query: 238   agcttgccctgctcctgcaaagtccggcaagc 269
             ||||| |||| || ||||| ||||||||||||
Sbjct: 61793 agcttcccctccttctgcagagtccggcaagc 61762
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>dbj|AK071453.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093F02, full
           insert sequence
          Length = 1211

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 78/92 (84%)
 Strand = Plus / Minus

                                                                       
Query: 178 gtctcgtacttgaatccttggttcctggaatggtctgcagcccaaacaaaaatgccgtaa 237
           ||||| |||||||| |||||| |||||||||| || |||||||| |  || |||||||| 
Sbjct: 934 gtctcatacttgaacccttggctcctggaatgatcagcagcccagatgaagatgccgtac 875

                                           
Query: 238 agcttgccctgctcctgcaaagtccggcaagc 269
           ||||| |||| || ||||| ||||||||||||
Sbjct: 874 agcttcccctccttctgcagagtccggcaagc 843
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>dbj|AK061215.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-E04, full
           insert sequence
          Length = 1096

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 78/92 (84%)
 Strand = Plus / Minus

                                                                       
Query: 178 gtctcgtacttgaatccttggttcctggaatggtctgcagcccaaacaaaaatgccgtaa 237
           ||||| |||||||| |||||| |||||||||| || |||||||| |  || |||||||| 
Sbjct: 819 gtctcatacttgaacccttggctcctggaatgatcagcagcccagatgaagatgccgtac 760

                                           
Query: 238 agcttgccctgctcctgcaaagtccggcaagc 269
           ||||| |||| || ||||| ||||||||||||
Sbjct: 759 agcttcccctccttctgcagagtccggcaagc 728
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 78/92 (84%)
 Strand = Plus / Minus

                                                                            
Query: 178      gtctcgtacttgaatccttggttcctggaatggtctgcagcccaaacaaaaatgccgtaa 237
                ||||| |||||||| |||||| |||||||||| || |||||||| |  || |||||||| 
Sbjct: 14053966 gtctcatacttgaacccttggctcctggaatgatcagcagcccagatgaagatgccgtac 14053907

                                                
Query: 238      agcttgccctgctcctgcaaagtccggcaagc 269
                ||||| |||| || ||||| ||||||||||||
Sbjct: 14053906 agcttcccctccttctgcagagtccggcaagc 14053875
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>gb|AC090889.3| Canis familiaris clone RP81-156O18, complete sequence
          Length = 146276

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 82     attccatatgatttcactcata 103
              ||||||||||||||||||||||
Sbjct: 122897 attccatatgatttcactcata 122918
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>gb|AC131269.3| Homo sapiens chromosome 8, clone RP11-416I21, complete sequence
          Length = 190031

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 14    ctttattattaaggaaaaata 34
             |||||||||||||||||||||
Sbjct: 98519 ctttattattaaggaaaaata 98539
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>gb|AC130360.4| Homo sapiens chromosome 8, clone RP11-287P18, complete sequence
          Length = 171474

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 14    ctttattattaaggaaaaata 34
             |||||||||||||||||||||
Sbjct: 24611 ctttattattaaggaaaaata 24631
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>gb|AF252831.2| Homo sapiens chromosome 8 clone SCb-177k12 map 8p22-p21, complete
            sequence
          Length = 115137

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 14   ctttattattaaggaaaaata 34
            |||||||||||||||||||||
Sbjct: 3404 ctttattattaaggaaaaata 3424
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>gb|AC105214.6| Homo sapiens chromosome 8, clone RP11-354G4, complete sequence
          Length = 158209

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 14     ctttattattaaggaaaaata 34
              |||||||||||||||||||||
Sbjct: 117468 ctttattattaaggaaaaata 117488
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>gb|AC026698.6| Homo sapiens chromosome 5 clone CTC-457H17, complete sequence
          Length = 192731

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 19    ttattaaggaaaaatagggca 39
             |||||||||||||||||||||
Sbjct: 21407 ttattaaggaaaaatagggca 21427
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>gb|AC005406.2| Homo sapiens clone b128f11, complete sequence
          Length = 226345

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 19     ttattaaggaaaaatagggca 39
              |||||||||||||||||||||
Sbjct: 171385 ttattaaggaaaaatagggca 171365
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>gb|AC130366.5| Homo sapiens chromosome 8, clone RP11-1236K1, complete sequence
          Length = 178000

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 14    ctttattattaaggaaaaata 34
             |||||||||||||||||||||
Sbjct: 40990 ctttattattaaggaaaaata 41010
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>gb|AC010598.6| Homo sapiens chromosome 5 clone CTC-560O9, complete sequence
          Length = 174551

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 19    ttattaaggaaaaatagggca 39
             |||||||||||||||||||||
Sbjct: 10840 ttattaaggaaaaatagggca 10820
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>gb|AC130339.12| Homo sapiens chromosome 8, clone RP13-941O14, complete sequence
          Length = 173255

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 14    ctttattattaaggaaaaata 34
             |||||||||||||||||||||
Sbjct: 47754 ctttattattaaggaaaaata 47774
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>gb|AC134683.9| Homo sapiens chromosome 8, clone RP11-1175L4, complete sequence
          Length = 172084

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 14     ctttattattaaggaaaaata 34
              |||||||||||||||||||||
Sbjct: 161360 ctttattattaaggaaaaata 161340
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>gb|AC134395.7| Homo sapiens chromosome 8, clone RP11-739E3, complete sequence
          Length = 178401

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 14     ctttattattaaggaaaaata 34
              |||||||||||||||||||||
Sbjct: 158204 ctttattattaaggaaaaata 158184
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>gb|AC130379.8| Homo sapiens chromosome 17, clone RP13-383M5, complete sequence
          Length = 195488

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 14     ctttattattaaggaaaaata 34
              |||||||||||||||||||||
Sbjct: 158553 ctttattattaaggaaaaata 158573
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>gb|AC130365.5| Homo sapiens chromosome 8, clone RP11-1195F20, complete sequence
          Length = 171639

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 14    ctttattattaaggaaaaata 34
             |||||||||||||||||||||
Sbjct: 30219 ctttattattaaggaaaaata 30239
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>gb|AC117621.7| Mus musculus chromosome 8, clone RP23-114B10, complete sequence
          Length = 214933

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    attaaggaaaaatagggcac 40
             ||||||||||||||||||||
Sbjct: 38768 attaaggaaaaatagggcac 38749
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>emb|Z78421.1|HSN121E8 Human DNA sequence from clone LL22NC03-121E8 on chromosome 22, complete
             sequence
          Length = 39372

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 141   gtaagcgggggcatcagtca 160
             ||||||||||||||||||||
Sbjct: 20743 gtaagcgggggcatcagtca 20762
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>emb|AL139818.15| Human DNA sequence from clone RP11-311B18 on chromosome 10 Contains a
             novel gene, complete sequence
          Length = 103124

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 18    attattaaggaaaaataggg 37
             ||||||||||||||||||||
Sbjct: 95828 attattaaggaaaaataggg 95809
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>emb|AL138772.8| Human DNA sequence from clone RP4-576A20 on chromosome 10, complete
            sequence
          Length = 55835

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 57   aacaattaaaatctatgctc 76
            ||||||||||||||||||||
Sbjct: 7066 aacaattaaaatctatgctc 7085
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>gb|AC162797.6| Mus musculus chromosome 8, clone RP23-293E17, complete sequence
          Length = 142444

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    attaaggaaaaatagggcac 40
             ||||||||||||||||||||
Sbjct: 65886 attaaggaaaaatagggcac 65867
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>gb|AC131956.1| Homo sapiens BAC clone RP11-793B23 from 4, complete sequence
          Length = 195404

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 15     tttattattaaggaaaaata 34
              ||||||||||||||||||||
Sbjct: 167485 tttattattaaggaaaaata 167466
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>gb|AF279874.3| Homo sapiens chromosome 8 clone CTD-2351C9 map q21-q23, complete
             sequence
          Length = 109808

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 89    atgatttcactcataaatca 108
             ||||||||||||||||||||
Sbjct: 16336 atgatttcactcataaatca 16317
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>gb|AC171557.7| Mus musculus chromosome 7, clone RP24-62E17, complete sequence
          Length = 163762

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 102   taaatcaatttactcaaacctaaa 125
             |||||||||||| |||||||||||
Sbjct: 91142 taaatcaatttagtcaaacctaaa 91119
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>emb|CR394550.5| Zebrafish DNA sequence from clone CH211-231O11 in linkage group 10,
              complete sequence
          Length = 170825

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 3      agcattatatgctttattat 22
              ||||||||||||||||||||
Sbjct: 140830 agcattatatgctttattat 140849
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>gb|AC122424.4| Mus musculus BAC clone RP24-173E19 from 8, complete sequence
          Length = 175181

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 208   tggtctgcagcccaaacaaa 227
             ||||||||||||||||||||
Sbjct: 63815 tggtctgcagcccaaacaaa 63834
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>gb|AC142262.3| Mus musculus BAC clone RP24-486I4 from 8, complete sequence
          Length = 204183

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 208  tggtctgcagcccaaacaaa 227
            ||||||||||||||||||||
Sbjct: 3142 tggtctgcagcccaaacaaa 3123
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>gb|AC103359.6| Mus musculus chromosome 8, clone RP24-365B9, complete sequence
          Length = 178620

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 186    cttgaatccttggttcctgg 205
              ||||||||||||||||||||
Sbjct: 115713 cttgaatccttggttcctgg 115732
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>emb|AL592224.17| Mouse DNA sequence from clone RP23-174G1 on chromosome 1, complete
              sequence
          Length = 217775

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 15     tttattattaaggaaaaata 34
              ||||||||||||||||||||
Sbjct: 137763 tttattattaaggaaaaata 137782


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,934,521
Number of Sequences: 3902068
Number of extensions: 2934521
Number of successful extensions: 57907
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57790
Number of HSP's gapped (non-prelim): 117
length of query: 274
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 252
effective length of database: 17,147,199,772
effective search space: 4321094342544
effective search space used: 4321094342544
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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