ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart28d01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_464260.1| Oryza sativa (japonica cultivar-group), mRNA 313 3e-82
2dbj|AK067291.1| Oryza sativa (japonica cultivar-group) cDNA clon... 313 3e-82
3gb|AY106393.1| Zea mays PCO117653 mRNA sequence 268 2e-68
4dbj|AK073551.1| Oryza sativa (japonica cultivar-group) cDNA clon... 234 2e-58
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
6dbj|AP005071.3| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
7dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
8dbj|AP003635.2| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
9gb|AC099685.2| Homo sapiens chromosome 8, clone RP11-87N16, comp... 46 0.11
10ref|NM_202996.1| Arabidopsis thaliana cysteine-type peptidase AT... 44 0.43
11ref|NM_120411.3| Arabidopsis thaliana cysteine-type peptidase AT... 44 0.43
12emb|AL162751.1|ATF12E4 Arabidopsis thaliana DNA chromosome 5, BA... 44 0.43
13emb|BX833026.1|CNS0A27J Arabidopsis thaliana Full-length cDNA Co... 44 0.43
14gb|AC115358.7| Mus musculus BAC clone RP23-190I17 from chromosom... 42 1.7
15gb|AC159716.6| Mus musculus 6 BAC RP23-80P15 (Roswell Park Cance... 42 1.7
16dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
17dbj|AP005498.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
18gb|AC152962.1| Mus musculus 6 BAC RP23-465F11 (Roswell Park Canc... 42 1.7
19ref|NM_113124.1| Arabidopsis thaliana cysteine-type peptidase AT... 40 6.7
20ref|XM_517863.1| PREDICTED: Pan troglodytes fer (fps/fes related... 40 6.7
21gb|AC069541.5| Homo sapiens chromosome 10 clone RP11-389O2, comp... 40 6.7
22ref|XM_755050.1| Ustilago maydis 521 hypothetical protein (UM039... 40 6.7
23gb|AC124495.2| Mus musculus BAC clone RP23-468F5 from chromosome... 40 6.7
24gb|AC096852.3| Sus scrofa clone RP44-524D11, complete sequence 40 6.7
25gb|AF038605.2| Caenorhabditis elegans cosmid C02B10, complete se... 40 6.7
26gb|AC091772.5| Homo sapiens chromosome 10 clone RP11-257L6, comp... 40 6.7
27gb|AC099776.2| Homo sapiens chromosome 3 clone RP11-280I3, compl... 40 6.7
28emb|BX571694.10| Zebrafish DNA sequence from clone CH211-159E21 ... 40 6.7
29dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.7
30gb|AY085012.1| Arabidopsis thaliana clone 124466 mRNA, complete ... 40 6.7
31gb|AC087591.2| Homo sapiens chromosome 3 clone RP11-95M5 map 3p,... 40 6.7
32gb|AC090937.2| Homo sapiens chromosome 3 clone RP11-316A10 map 3... 40 6.7
33gb|AC018359.7|AC018359 Homo sapiens 3 BAC RP11-35C18 (Roswell Pa... 40 6.7
34dbj|AP003750.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.7
35gb|BC087421.1| Xenopus laevis hypothetical LOC496028, mRNA (cDNA... 40 6.7 
>ref|XM_464260.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1106

 Score =  313 bits (158), Expect = 3e-82
 Identities = 254/286 (88%)
 Strand = Plus / Minus

                                                                       
Query: 210 cctacctagaacagccagtgcttctttttggtcttgcgcgtgggaagatcttcattggca 269
           ||||| ||||||||||||||||||||| ||||||||||  | |||||||||||| | |||
Sbjct: 871 cctacttagaacagccagtgcttctttctggtcttgcgatttggaagatcttcagttgca 812

                                                                       
Query: 270 tacaaagaattgtagtgtacttcgcaccagaaacttagccaaagctctcttgtaggagcg 329
           ||||| ||||||||||| || || | |||||| |||| |||||||||| |||| |||| |
Sbjct: 811 tacaaggaattgtagtgcacctcactccagaagcttaaccaaagctcttttgtgggagtg 752

                                                                       
Query: 330 gcgtccctggggactatctcgatcaggcatgtgtctctaaacgacgtcagcaggcaaatt 389
           ||  | ||||||||||||||||| ||||||||||||||||| || |||||||||||||| 
Sbjct: 751 gcacctctggggactatctcgattaggcatgtgtctctaaatgatgtcagcaggcaaatc 692

                                                                       
Query: 390 ttggcaccaaaccggtctgcagccgcttgtaaagtcacatgatctccccattccccagat 449
           |||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 691 ttggcagcaaaccggtctgcagccgcttgtaaggtcacatgatctccccattctccagat 632

                                                         
Query: 450 cttttcattttcttcaagtaaaccttgtagtccaatggtacatagc 495
           |||||||||||||||||||| ||||| || ||||  ||||||||||
Sbjct: 631 cttttcattttcttcaagtacaccttatattccatcggtacatagc 586
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>dbj|AK067291.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013104L05, full
           insert sequence
          Length = 1107

 Score =  313 bits (158), Expect = 3e-82
 Identities = 254/286 (88%)
 Strand = Plus / Minus

                                                                       
Query: 210 cctacctagaacagccagtgcttctttttggtcttgcgcgtgggaagatcttcattggca 269
           ||||| ||||||||||||||||||||| ||||||||||  | |||||||||||| | |||
Sbjct: 871 cctacttagaacagccagtgcttctttctggtcttgcgatttggaagatcttcagttgca 812

                                                                       
Query: 270 tacaaagaattgtagtgtacttcgcaccagaaacttagccaaagctctcttgtaggagcg 329
           ||||| ||||||||||| || || | |||||| |||| |||||||||| |||| |||| |
Sbjct: 811 tacaaggaattgtagtgcacctcactccagaagcttaaccaaagctcttttgtgggagtg 752

                                                                       
Query: 330 gcgtccctggggactatctcgatcaggcatgtgtctctaaacgacgtcagcaggcaaatt 389
           ||  | ||||||||||||||||| ||||||||||||||||| || |||||||||||||| 
Sbjct: 751 gcacctctggggactatctcgattaggcatgtgtctctaaatgatgtcagcaggcaaatc 692

                                                                       
Query: 390 ttggcaccaaaccggtctgcagccgcttgtaaagtcacatgatctccccattccccagat 449
           |||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 691 ttggcagcaaaccggtctgcagccgcttgtaaggtcacatgatctccccattctccagat 632

                                                         
Query: 450 cttttcattttcttcaagtaaaccttgtagtccaatggtacatagc 495
           |||||||||||||||||||| ||||| || ||||  ||||||||||
Sbjct: 631 cttttcattttcttcaagtacaccttatattccatcggtacatagc 586
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>gb|AY106393.1| Zea mays PCO117653 mRNA sequence
          Length = 1006

 Score =  268 bits (135), Expect = 2e-68
 Identities = 243/279 (87%)
 Strand = Plus / Minus

                                                                       
Query: 215 ctagaacagccagtgcttctttttggtcttgcgcgtgggaagatcttcattggcatacaa 274
           |||||||||||| |||||||| || || || || || ||||||||||||   ||||||||
Sbjct: 819 ctagaacagccaatgcttcttcttagttttccgtgttggaagatcttcaactgcatacaa 760

                                                                       
Query: 275 agaattgtagtgtacttcgcaccagaaacttagccaaagctctcttgtaggagcggcgtc 334
            ||||||||||||||||| | ||||||||||||||||||||||||||| |||| ||| ||
Sbjct: 759 tgaattgtagtgtacttcacgccagaaacttagccaaagctctcttgttggagtggcatc 700

                                                                       
Query: 335 cctggggactatctcgatcaggcatgtgtctctaaacgacgtcagcaggcaaattttggc 394
            |||||||||||||| |  |||||||||||||||||||| |||| ||| || ||||| ||
Sbjct: 699 tctggggactatctcaactaggcatgtgtctctaaacgatgtcaacagacatattttagc 640

                                                                       
Query: 395 accaaaccggtctgcagccgcttgtaaagtcacatgatctccccattccccagatctttt 454
           | |||||| ||||||||| || ||||| ||||||||||| |||||||||||||| |||||
Sbjct: 639 agcaaacctgtctgcagctgcctgtaaggtcacatgatcaccccattccccagacctttt 580

                                                  
Query: 455 cattttcttcaagtaaaccttgtagtccaatggtacata 493
           ||||||||||||||||||||| || |||| ||| |||||
Sbjct: 579 cattttcttcaagtaaaccttatattccattggcacata 541
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>dbj|AK073551.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044I12, full
           insert sequence
          Length = 1227

 Score =  234 bits (118), Expect = 2e-58
 Identities = 241/282 (85%)
 Strand = Plus / Minus

                                                                       
Query: 214 cctagaacagccagtgcttctttttggtcttgcgcgtgggaagatcttcattggcataca 273
           ||||||||| ||| |||||||| ||||| ||||| ||  | ||||| ||| | || ||||
Sbjct: 871 cctagaacaaccaatgcttcttcttggttttgcgggttaggagatcgtcagttgcgtaca 812

                                                                       
Query: 274 aagaattgtagtgtacttcgcaccagaaacttagccaaagctctcttgtaggagcggcgt 333
           | ||||||||||| ||||| |||||||| |||||||| | ||| ||||| ||||   | |
Sbjct: 811 aggaattgtagtgcacttcacaccagaagcttagccacaactcccttgtgggagtcacat 752

                                                                       
Query: 334 ccctggggactatctcgatcaggcatgtgtctctaaacgacgtcagcaggcaaattttgg 393
           |||||||||||||||| || ||||| |||||||| || ||||||||||  ||||||||||
Sbjct: 751 ccctggggactatctcaattaggcaggtgtctctgaatgacgtcagcaaacaaattttgg 692

                                                                       
Query: 394 caccaaaccggtctgcagccgcttgtaaagtcacatgatctccccattccccagatcttt 453
           ||||||||| ||||||||| ||||||||||||| |||||| |||||||||||||||||||
Sbjct: 691 caccaaacctgtctgcagctgcttgtaaagtcagatgatccccccattccccagatcttt 632

                                                     
Query: 454 tcattttcttcaagtaaaccttgtagtccaatggtacatagc 495
           |||||||||||||||| || || || ||||  ||||||||||
Sbjct: 631 tcattttcttcaagtagactttatattccataggtacatagc 590
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 61/66 (92%)
 Strand = Plus / Plus

                                                                           
Query: 336     ctggggactatctcgatcaggcatgtgtctctaaacgacgtcagcaggcaaattttggca 395
               ||||||||||||||||| ||||||||||||||||| || |||||||||||||| ||||||
Sbjct: 3706754 ctggggactatctcgattaggcatgtgtctctaaatgatgtcagcaggcaaatcttggca 3706813

                     
Query: 396     ccaaac 401
                |||||
Sbjct: 3706814 gcaaac 3706819



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 49/51 (96%)
 Strand = Plus / Plus

                                                                  
Query: 401     ccggtctgcagccgcttgtaaagtcacatgatctccccattccccagatct 451
               ||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 3707424 ccggtctgcagccgcttgtaaggtcacatgatctccccattctccagatct 3707474



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                                  
Query: 210     cctacctagaacagccagtgcttctttttggtcttgcgcgtgggaagatct 260
               ||||| ||||||||||||||||||||| ||||||||||  | |||||||||
Sbjct: 3706118 cctacttagaacagccagtgcttctttctggtcttgcgatttggaagatct 3706168



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                             
Query: 450     cttttcattttcttcaagtaaaccttgtagtccaatggtacatagc 495
               |||||||||||||||||||| ||||| || ||||  ||||||||||
Sbjct: 3707566 cttttcattttcttcaagtacaccttatattccatcggtacatagc 3707611



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                  
Query: 267     gcatacaaagaattgtagtgtacttcgcaccagaaacttagccaaagctct 317
               |||||||| ||||||||||| || || | |||||| |||| ||||||||||
Sbjct: 3706444 gcatacaaggaattgtagtgcacctcactccagaagcttaaccaaagctct 3706494
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>dbj|AP005071.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0669G09
          Length = 140067

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 61/66 (92%)
 Strand = Plus / Plus

                                                                         
Query: 336   ctggggactatctcgatcaggcatgtgtctctaaacgacgtcagcaggcaaattttggca 395
             ||||||||||||||||| ||||||||||||||||| || |||||||||||||| ||||||
Sbjct: 47071 ctggggactatctcgattaggcatgtgtctctaaatgatgtcagcaggcaaatcttggca 47130

                   
Query: 396   ccaaac 401
              |||||
Sbjct: 47131 gcaaac 47136



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 49/51 (96%)
 Strand = Plus / Plus

                                                                
Query: 401   ccggtctgcagccgcttgtaaagtcacatgatctccccattccccagatct 451
             ||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 47741 ccggtctgcagccgcttgtaaggtcacatgatctccccattctccagatct 47791



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                                
Query: 210   cctacctagaacagccagtgcttctttttggtcttgcgcgtgggaagatct 260
             ||||| ||||||||||||||||||||| ||||||||||  | |||||||||
Sbjct: 46435 cctacttagaacagccagtgcttctttctggtcttgcgatttggaagatct 46485



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                           
Query: 450   cttttcattttcttcaagtaaaccttgtagtccaatggtacatagc 495
             |||||||||||||||||||| ||||| || ||||  ||||||||||
Sbjct: 47883 cttttcattttcttcaagtacaccttatattccatcggtacatagc 47928



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                
Query: 267   gcatacaaagaattgtagtgtacttcgcaccagaaacttagccaaagctct 317
             |||||||| ||||||||||| || || | |||||| |||| ||||||||||
Sbjct: 46761 gcatacaaggaattgtagtgcacctcactccagaagcttaaccaaagctct 46811
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Minus

                                                                            
Query: 333      tccctggggactatctcgatcaggcatgtgtctctaaacgacgtcagcaggcaaattttg 392
                ||||||||||||||||| || ||||| |||||||| || ||||||||||  |||||||||
Sbjct: 27362687 tccctggggactatctcaattaggcaggtgtctctgaatgacgtcagcaaacaaattttg 27362628

                         
Query: 393      gcaccaaac 401
                |||||||||
Sbjct: 27362627 gcaccaaac 27362619



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 45/48 (93%)
 Strand = Plus / Minus

                                                                
Query: 404      gtctgcagccgcttgtaaagtcacatgatctccccattccccagatct 451
                ||||||||| ||||||||||||| |||||| |||||||||||||||||
Sbjct: 27362131 gtctgcagctgcttgtaaagtcagatgatccccccattccccagatct 27362084



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                         
Query: 270      tacaaagaattgtagtgtacttcgcaccagaaacttagcca 310
                ||||| ||||||||||| ||||| |||||||| ||||||||
Sbjct: 27362857 tacaaggaattgtagtgcacttcacaccagaagcttagcca 27362817



 Score = 44.1 bits (22), Expect = 0.43
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                              
Query: 450      cttttcattttcttcaagtaaaccttgtagtccaatggtacatagc 495
                |||||||||||||||||||| || || || ||||  ||||||||||
Sbjct: 27362008 cttttcattttcttcaagtagactttatattccataggtacatagc 27361963
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>dbj|AP003635.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0686E06
          Length = 150474

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Minus

                                                                          
Query: 333    tccctggggactatctcgatcaggcatgtgtctctaaacgacgtcagcaggcaaattttg 392
              ||||||||||||||||| || ||||| |||||||| || ||||||||||  |||||||||
Sbjct: 105514 tccctggggactatctcaattaggcaggtgtctctgaatgacgtcagcaaacaaattttg 105455

                       
Query: 393    gcaccaaac 401
              |||||||||
Sbjct: 105454 gcaccaaac 105446



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 45/48 (93%)
 Strand = Plus / Minus

                                                              
Query: 404    gtctgcagccgcttgtaaagtcacatgatctccccattccccagatct 451
              ||||||||| ||||||||||||| |||||| |||||||||||||||||
Sbjct: 104958 gtctgcagctgcttgtaaagtcagatgatccccccattccccagatct 104911



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                       
Query: 270    tacaaagaattgtagtgtacttcgcaccagaaacttagcca 310
              ||||| ||||||||||| ||||| |||||||| ||||||||
Sbjct: 105684 tacaaggaattgtagtgcacttcacaccagaagcttagcca 105644



 Score = 44.1 bits (22), Expect = 0.43
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                            
Query: 450    cttttcattttcttcaagtaaaccttgtagtccaatggtacatagc 495
              |||||||||||||||||||| || || || ||||  ||||||||||
Sbjct: 104835 cttttcattttcttcaagtagactttatattccataggtacatagc 104790
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>gb|AC099685.2| Homo sapiens chromosome 8, clone RP11-87N16, complete sequence
          Length = 182413

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                             
Query: 274    aagaattgtagtgtacttcgcaccagaaact 304
              |||||||||||| |||||| |||||||||||
Sbjct: 109600 aagaattgtagtatacttctcaccagaaact 109570
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>ref|NM_202996.1| Arabidopsis thaliana cysteine-type peptidase AT5G03330 transcript
           variant AT5G03330.2 mRNA, complete cds
          Length = 1288

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 405 tctgcagccgcttgtaaagtcacatgatctccccattc 442
           |||||||| || ||||| ||||||||||| ||||||||
Sbjct: 931 tctgcagctgcctgtaatgtcacatgatcgccccattc 894
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>ref|NM_120411.3| Arabidopsis thaliana cysteine-type peptidase AT5G03330 transcript
            variant AT5G03330.1 mRNA, complete cds
          Length = 1463

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 405  tctgcagccgcttgtaaagtcacatgatctccccattc 442
            |||||||| || ||||| ||||||||||| ||||||||
Sbjct: 1106 tctgcagctgcctgtaatgtcacatgatcgccccattc 1069
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>emb|AL162751.1|ATF12E4 Arabidopsis thaliana DNA chromosome 5, BAC clone F12E4 (ESSA project)
          Length = 121552

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 405   tctgcagccgcttgtaaagtcacatgatctccccattc 442
             |||||||| || ||||| ||||||||||| ||||||||
Sbjct: 22922 tctgcagctgcctgtaatgtcacatgatcgccccattc 22885
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>emb|BX833026.1|CNS0A27J Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTSIL30ZB09 of Silique of strain col-0 of Arabidopsis
            thaliana (thale cress)
          Length = 1512

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 405  tctgcagccgcttgtaaagtcacatgatctccccattc 442
            |||||||| || ||||| ||||||||||| ||||||||
Sbjct: 1107 tctgcagctgcctgtaatgtcacatgatcgccccattc 1070
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>gb|AC115358.7| Mus musculus BAC clone RP23-190I17 from chromosome 18, complete sequence
          Length = 218573

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 141    acatgcagatgctgctggact 161
              |||||||||||||||||||||
Sbjct: 159663 acatgcagatgctgctggact 159683
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>gb|AC159716.6| Mus musculus 6 BAC RP23-80P15 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 239739

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 118    catcagcagtatgaaataagg 138
              |||||||||||||||||||||
Sbjct: 198275 catcagcagtatgaaataagg 198295
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 382      ggcaaattttggcaccaaacc 402
                |||||||||||||||||||||
Sbjct: 13754525 ggcaaattttggcaccaaacc 13754505
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>dbj|AP005498.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0406D01
          Length = 163932

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 382   ggcaaattttggcaccaaacc 402
             |||||||||||||||||||||
Sbjct: 68594 ggcaaattttggcaccaaacc 68574
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>gb|AC152962.1| Mus musculus 6 BAC RP23-465F11 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 187047

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 118   catcagcagtatgaaataagg 138
             |||||||||||||||||||||
Sbjct: 83223 catcagcagtatgaaataagg 83243
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>ref|NM_113124.1| Arabidopsis thaliana cysteine-type peptidase AT3G22260 transcript
           variant AT3G22260.1 mRNA, complete cds
          Length = 1145

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 50/60 (83%)
 Strand = Plus / Minus

                                                                       
Query: 252 ggaagatcttcattggcatacaaagaattgtagtgtacttcgcaccagaaacttagccaa 311
           |||| |||| |||| || || ||||||||||| || ||||||| |||||| || ||||||
Sbjct: 957 ggaacatctccattagcgtataaagaattgtaatgcacttcgctccagaagctgagccaa 898
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>ref|XM_517863.1| PREDICTED: Pan troglodytes fer (fps/fes related) tyrosine kinase
           (phosphoprotein NCP94) (LOC461981), mRNA
          Length = 3241

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 451 ttttcattttcttcaagtaa 470
           ||||||||||||||||||||
Sbjct: 866 ttttcattttcttcaagtaa 847
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>gb|AC069541.5| Homo sapiens chromosome 10 clone RP11-389O2, complete sequence
          Length = 158568

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 290   ttcgcaccagaaacttagccaaag 313
             |||||||||||||||||| |||||
Sbjct: 65981 ttcgcaccagaaacttaggcaaag 66004
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>ref|XM_755050.1| Ustilago maydis 521 hypothetical protein (UM03996.1) partial mRNA
          Length = 1131

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 311 aagctctcttgtaggagcgg 330
           ||||||||||||||||||||
Sbjct: 774 aagctctcttgtaggagcgg 755
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>gb|AC124495.2| Mus musculus BAC clone RP23-468F5 from chromosome 1, complete sequence
          Length = 182578

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 76     cataaaagcttacatgagtc 95
              ||||||||||||||||||||
Sbjct: 122567 cataaaagcttacatgagtc 122548
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>gb|AC096852.3| Sus scrofa clone RP44-524D11, complete sequence
          Length = 69000

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   ggctacatgcagatgctgct 156
             ||||||||||||||||||||
Sbjct: 44462 ggctacatgcagatgctgct 44443
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>gb|AF038605.2| Caenorhabditis elegans cosmid C02B10, complete sequence
          Length = 40489

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 447   gatcttttcattttcttcaa 466
             ||||||||||||||||||||
Sbjct: 18060 gatcttttcattttcttcaa 18041
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>gb|AC091772.5| Homo sapiens chromosome 10 clone RP11-257L6, complete sequence
          Length = 158559

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 290   ttcgcaccagaaacttagccaaag 313
             |||||||||||||||||| |||||
Sbjct: 92588 ttcgcaccagaaacttaggcaaag 92565
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>gb|AC099776.2| Homo sapiens chromosome 3 clone RP11-280I3, complete sequence
          Length = 171347

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 451   ttttcattttcttcaagtaaacct 474
             ||||||||||||||||| ||||||
Sbjct: 25776 ttttcattttcttcaagaaaacct 25799
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>emb|BX571694.10| Zebrafish DNA sequence from clone CH211-159E21 in linkage group 10,
             complete sequence
          Length = 163542

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 456   attttcttcaagtaaacctt 475
             ||||||||||||||||||||
Sbjct: 61245 attttcttcaagtaaacctt 61226
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 259      cttcattggcatacaaagaattgtagtg 286
                ||||| |||||||||| |||||||||||
Sbjct: 24006957 cttcaatggcatacaaggaattgtagtg 24006984
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>gb|AY085012.1| Arabidopsis thaliana clone 124466 mRNA, complete sequence
          Length = 1145

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 50/60 (83%)
 Strand = Plus / Minus

                                                                       
Query: 252 ggaagatcttcattggcatacaaagaattgtagtgtacttcgcaccagaaacttagccaa 311
           |||| |||| |||| || || ||||||||||| || ||||||| |||||| || ||||||
Sbjct: 957 ggaacatctccattagcgtataaagaattgtaatgcacttcgctccagaagctgagccaa 898
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>gb|AC087591.2| Homo sapiens chromosome 3 clone RP11-95M5 map 3p, complete sequence
          Length = 161014

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 440    ttccccagatcttttcattt 459
              ||||||||||||||||||||
Sbjct: 159236 ttccccagatcttttcattt 159217
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>gb|AC090937.2| Homo sapiens chromosome 3 clone RP11-316A10 map 3p, complete sequence
          Length = 160702

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 440  ttccccagatcttttcattt 459
            ||||||||||||||||||||
Sbjct: 8358 ttccccagatcttttcattt 8339
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>gb|AC018359.7|AC018359 Homo sapiens 3 BAC RP11-35C18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 160307

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 451    ttttcattttcttcaagtaaacct 474
              ||||||||||||||||| ||||||
Sbjct: 146990 ttttcattttcttcaagaaaacct 147013
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>dbj|AP003750.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1174_G05
          Length = 111202

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 259   cttcattggcatacaaagaattgtagtg 286
             ||||| |||||||||| |||||||||||
Sbjct: 48565 cttcaatggcatacaaggaattgtagtg 48592
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>gb|BC087421.1| Xenopus laevis hypothetical LOC496028, mRNA (cDNA clone MGC:99222
           IMAGE:7209238), complete cds
          Length = 1434

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 226 agtgcttctttttggtcttg 245
           ||||||||||||||||||||
Sbjct: 215 agtgcttctttttggtcttg 196


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,645,457
Number of Sequences: 3902068
Number of extensions: 4645457
Number of successful extensions: 91973
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91808
Number of HSP's gapped (non-prelim): 165
length of query: 495
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 473
effective length of database: 17,147,199,772
effective search space: 8110625492156
effective search space used: 8110625492156
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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