ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart28c12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YM47_YEAST (Q03233) Hypothetical 22.1 kDa protein in SSO2-HSC82 ... 29 4.1

>YM47_YEAST (Q03233) Hypothetical 22.1 kDa protein in SSO2-HSC82 intergenic|
           region
          Length = 198

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 261 RTDAREKTKPANCGGGRTTVQFLDLTSNTHSA 356
           R+ ++++TK   C  GR   + LDL  NT +A
Sbjct: 37  RSKSKQRTKSKRCVSGRLATEVLDLYGNTKTA 68


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,675,315
Number of Sequences: 219361
Number of extensions: 854966
Number of successful extensions: 2029
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2027
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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