ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart28c10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1R13AD_ARATH (Q9FKC0) 60S ribosomal protein L13a-4 58 1e-08
2R13AA_ARATH (Q9SFU1) 60S ribosomal protein L13a-1 58 2e-08
3RL13A_LUPLU (O49885) 60S ribosomal protein L13a 56 6e-08
4R13AC_ARATH (Q9SVR0) 60S ribosomal protein L13a-3 55 8e-08
5R13AB_ARATH (Q9LRX8) 60S ribosomal protein L13a-2 55 1e-07
6RL13A_PICMA (O65055) 60S ribosomal protein L13a 44 2e-04
7RL13A_BOVIN (Q3SZ90) 60S ribosomal protein L13a 31 1.6
8RL13A_PONPY (Q5RA38) 60S ribosomal protein L13a 30 3.6
9RL13A_HUMAN (P40429) 60S ribosomal protein L13a (23 kDa highly b... 30 4.7
10T2R60_PONPY (Q645U7) Taste receptor type 2 member 60 (T2R60) (T2... 29 6.1
11T2R60_MACMU (Q645S2) Taste receptor type 2 member 60 (T2R60) (T2... 29 7.9
12NPT2C_MOUSE (Q80SU6) Sodium-dependent phosphate transport protei... 29 7.9
13CO9A2_CHICK (P12108) Collagen alpha-2(IX) chain precursor 29 7.9

>R13AD_ARATH (Q9FKC0) 60S ribosomal protein L13a-4|
          Length = 206

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 27/34 (79%), Positives = 31/34 (91%)
 Frame = -1

Query: 498 YDRRKQLAKLRVKAEKAAEEKLGTQLEILAPIKY 397
           Y+R+KQL KLRVKAEK AEEKLG QL+ILAP+KY
Sbjct: 173 YERKKQLNKLRVKAEKVAEEKLGAQLDILAPVKY 206



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>R13AA_ARATH (Q9SFU1) 60S ribosomal protein L13a-1|
          Length = 206

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 25/34 (73%), Positives = 32/34 (94%)
 Frame = -1

Query: 498 YDRRKQLAKLRVKAEKAAEEKLGTQLEILAPIKY 397
           Y+R+KQL+KLR KAEK AEEKLG+QL++LAP+KY
Sbjct: 173 YERKKQLSKLRAKAEKVAEEKLGSQLDVLAPVKY 206



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>RL13A_LUPLU (O49885) 60S ribosomal protein L13a|
          Length = 205

 Score = 55.8 bits (133), Expect = 6e-08
 Identities = 25/34 (73%), Positives = 32/34 (94%)
 Frame = -1

Query: 498 YDRRKQLAKLRVKAEKAAEEKLGTQLEILAPIKY 397
           Y+R+KQL KLRVKAE+ A+EKLG+QL+ILAP+KY
Sbjct: 172 YERKKQLNKLRVKAEQVAQEKLGSQLDILAPVKY 205



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>R13AC_ARATH (Q9SVR0) 60S ribosomal protein L13a-3|
          Length = 206

 Score = 55.5 bits (132), Expect = 8e-08
 Identities = 24/34 (70%), Positives = 31/34 (91%)
 Frame = -1

Query: 498 YDRRKQLAKLRVKAEKAAEEKLGTQLEILAPIKY 397
           Y+R+KQL KLR KAEK AEE+LG+QL++LAP+KY
Sbjct: 173 YERKKQLNKLRTKAEKVAEERLGSQLDVLAPVKY 206



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>R13AB_ARATH (Q9LRX8) 60S ribosomal protein L13a-2|
          Length = 206

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 25/34 (73%), Positives = 30/34 (88%)
 Frame = -1

Query: 498 YDRRKQLAKLRVKAEKAAEEKLGTQLEILAPIKY 397
           Y+R+KQL KLR KAEK AEEKLG+QL++LA IKY
Sbjct: 173 YERKKQLTKLRAKAEKVAEEKLGSQLDVLASIKY 206



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>RL13A_PICMA (O65055) 60S ribosomal protein L13a|
          Length = 206

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 20/34 (58%), Positives = 28/34 (82%)
 Frame = -1

Query: 498 YDRRKQLAKLRVKAEKAAEEKLGTQLEILAPIKY 397
           Y+RRKQLAKLR KA + AE++L  ++E+LA +KY
Sbjct: 173 YERRKQLAKLRSKAVELAEKQLAPEMELLASLKY 206



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>RL13A_BOVIN (Q3SZ90) 60S ribosomal protein L13a|
          Length = 202

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = -1

Query: 498 YDRRKQLAKLRVKAEKAAEEKLGTQLEIL 412
           Y ++KQL +LR +AEK  E+K+G   E+L
Sbjct: 167 YRKKKQLMRLRKQAEKNIEKKIGKFTEVL 195



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>RL13A_PONPY (Q5RA38) 60S ribosomal protein L13a|
          Length = 202

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -1

Query: 498 YDRRKQLAKLRVKAEKAAEEKLGTQLEIL 412
           Y ++KQL +LR +AEK  E+K+    E+L
Sbjct: 167 YRKKKQLVRLRKQAEKNVEKKIDKYTEVL 195



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>RL13A_HUMAN (P40429) 60S ribosomal protein L13a (23 kDa highly basic protein)|
          Length = 202

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -1

Query: 498 YDRRKQLAKLRVKAEKAAEEKLGTQLEIL 412
           Y ++KQL +LR +AEK  E+K+    E+L
Sbjct: 167 YRKKKQLMRLRKQAEKNVEKKIDKYTEVL 195



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>T2R60_PONPY (Q645U7) Taste receptor type 2 member 60 (T2R60) (T2R56)|
          Length = 318

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 19/60 (31%), Positives = 26/60 (43%)
 Frame = -3

Query: 256 LKFSTWSTVSFIKCVHLKILVNVYQVIIWCCSRFSSLQPWQPLVMACCGCFSDFLSYIKN 77
           L FSTW +V +  CV  KI    + V +W   + S   PW          F+  L +I N
Sbjct: 108 LWFSTWLSVFY--CV--KIATFTHPVFLWLKHKLSEWVPWMLFSSVGLSSFTTILFFIGN 163



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>T2R60_MACMU (Q645S2) Taste receptor type 2 member 60 (T2R60) (T2R56)|
          Length = 318

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = -3

Query: 256 LKFSTWSTVSFIKCVHLKILVNVYQVIIWCCSRFSSLQPWQPLVMACCGCFSDFLSYIKN 77
           L FS+W +V +  CV  KI    + V +W   + S   PW          F+  L +I N
Sbjct: 108 LWFSSWLSVFY--CV--KIATFTHPVFLWLKHKLSEWVPWMFFSSVGLSSFTTILFFIGN 163

Query: 76  LSV 68
            S+
Sbjct: 164 HSI 166



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>NPT2C_MOUSE (Q80SU6) Sodium-dependent phosphate transport protein 2C|
           (Sodium/phosphate cotransporter 2C) (Na(+)/Pi
           cotransporter 2C) (Sodium-phosphate transport protein
           2C) (Na(+)-dependent phosphate cotransporter 2C)
           (NaPi-2c) (Solute carrier family 34
          Length = 601

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 172 WCCSRFSSLQPWQPLVMACCGC 107
           W      SL+PW  LV ACC C
Sbjct: 553 WLPLWLHSLEPWDRLVTACCPC 574



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>CO9A2_CHICK (P12108) Collagen alpha-2(IX) chain precursor|
          Length = 677

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = -3

Query: 484 AAGEAPRQGREGSRGEVGNSA--GDPGP 407
           A GE  +QG++G +G+VG S   G PGP
Sbjct: 198 ALGEPGQQGKQGPKGDVGVSGEQGVPGP 225


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,976,792
Number of Sequences: 219361
Number of extensions: 1157041
Number of successful extensions: 2853
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2851
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3523384522
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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