ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart28c10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY846823.1| Triticum aestivum ribosomal protein L13a mRNA, complete cds Length = 666 Score = 214 bits (108), Expect = 2e-52 Identities = 126/132 (95%) Strand = Plus / Minus Query: 367 gatggcgcacaaaagctctgatctctcttagtatttgatcggggccaggatctccagctg 426 |||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 666 gatggcgcacggaagctctaatctctcttagtatttgatcggggctaggatctccagctg 607 Query: 427 agttcccaacttctcctcggctgccttctcggccttgacgcggagcttcgccagctgctt 486 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct: 606 agttcccaacttctcctcggccgccttctcggccttgacgcggagcttcgccagttgctt 547 Query: 487 tctcctgtcgta 498 |||||||||||| Sbjct: 546 tctcctgtcgta 535
>ref|XM_469814.1| Oryza sativa (japonica cultivar-group), mRNA Length = 935 Score = 111 bits (56), Expect = 2e-21 Identities = 89/100 (89%) Strand = Plus / Minus Query: 396 agtatttgatcggggccaggatctccagctgagttcccaacttctcctcggctgccttct 455 ||||||||||||| || || ||||||||||||| |||| |||||||||||||||||||| Sbjct: 692 agtatttgatcggagcaagaatctccagctgaggacccagcttctcctcggctgccttct 633 Query: 456 cggccttgacgcggagcttcgccagctgctttctcctgtc 495 | |||||||| || ||||||||||| ||||| |||||||| Sbjct: 632 cagccttgacacgcagcttcgccagttgcttcctcctgtc 593 Score = 75.8 bits (38), Expect = 1e-10 Identities = 85/98 (86%), Gaps = 2/98 (2%) Strand = Plus / Minus Query: 198 agaatcttcaaatgcacacatttgataaac-gaaacagttgaccaagtagaaaatttcaa 256 ||||||| ||||||||||||||||| |||| ||||||||| | | | ||||||||||||| Sbjct: 885 agaatctccaaatgcacacatttgacaaacagaaacagttcatcgactagaaaatttcaa 826 Query: 257 atgagggtagcagaact-gcatgcataacaaaggttta 293 || | ||||||||||| | ||||||||||| |||||| Sbjct: 825 ataggagtagcagaactgggatgcataacaacggttta 788
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 111 bits (56), Expect = 2e-21 Identities = 89/100 (89%) Strand = Plus / Minus Query: 396 agtatttgatcggggccaggatctccagctgagttcccaacttctcctcggctgccttct 455 ||||||||||||| || || ||||||||||||| |||| |||||||||||||||||||| Sbjct: 30901123 agtatttgatcggagcaagaatctccagctgaggacccagcttctcctcggctgccttct 30901064 Query: 456 cggccttgacgcggagcttcgccagctgctttctcctgtc 495 | |||||||| || ||||||||||| ||||| |||||||| Sbjct: 30901063 cagccttgacacgcagcttcgccagttgcttcctcctgtc 30901024 Score = 75.8 bits (38), Expect = 1e-10 Identities = 85/98 (86%), Gaps = 2/98 (2%) Strand = Plus / Minus Query: 198 agaatcttcaaatgcacacatttgataaac-gaaacagttgaccaagtagaaaatttcaa 256 ||||||| ||||||||||||||||| |||| ||||||||| | | | ||||||||||||| Sbjct: 30901316 agaatctccaaatgcacacatttgacaaacagaaacagttcatcgactagaaaatttcaa 30901257 Query: 257 atgagggtagcagaact-gcatgcataacaaaggttta 293 || | ||||||||||| | ||||||||||| |||||| Sbjct: 30901256 ataggagtagcagaactgggatgcataacaacggttta 30901219
>gb|AC120509.3| Oryza sativa chromosome 3 BAC OSJNBb0081K01 genomic sequence, complete sequence Length = 122496 Score = 111 bits (56), Expect = 2e-21 Identities = 89/100 (89%) Strand = Plus / Plus Query: 396 agtatttgatcggggccaggatctccagctgagttcccaacttctcctcggctgccttct 455 ||||||||||||| || || ||||||||||||| |||| |||||||||||||||||||| Sbjct: 41967 agtatttgatcggagcaagaatctccagctgaggacccagcttctcctcggctgccttct 42026 Query: 456 cggccttgacgcggagcttcgccagctgctttctcctgtc 495 | |||||||| || ||||||||||| ||||| |||||||| Sbjct: 42027 cagccttgacacgcagcttcgccagttgcttcctcctgtc 42066 Score = 75.8 bits (38), Expect = 1e-10 Identities = 85/98 (86%), Gaps = 2/98 (2%) Strand = Plus / Plus Query: 198 agaatcttcaaatgcacacatttgataaac-gaaacagttgaccaagtagaaaatttcaa 256 ||||||| ||||||||||||||||| |||| ||||||||| | | | ||||||||||||| Sbjct: 41774 agaatctccaaatgcacacatttgacaaacagaaacagttcatcgactagaaaatttcaa 41833 Query: 257 atgagggtagcagaact-gcatgcataacaaaggttta 293 || | ||||||||||| | ||||||||||| |||||| Sbjct: 41834 ataggagtagcagaactgggatgcataacaacggttta 41871
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 111 bits (56), Expect = 2e-21 Identities = 89/100 (89%) Strand = Plus / Minus Query: 396 agtatttgatcggggccaggatctccagctgagttcccaacttctcctcggctgccttct 455 ||||||||||||| || || ||||||||||||| |||| |||||||||||||||||||| Sbjct: 30991646 agtatttgatcggagcaagaatctccagctgaggacccagcttctcctcggctgccttct 30991587 Query: 456 cggccttgacgcggagcttcgccagctgctttctcctgtc 495 | |||||||| || ||||||||||| ||||| |||||||| Sbjct: 30991586 cagccttgacacgcagcttcgccagttgcttcctcctgtc 30991547 Score = 75.8 bits (38), Expect = 1e-10 Identities = 85/98 (86%), Gaps = 2/98 (2%) Strand = Plus / Minus Query: 198 agaatcttcaaatgcacacatttgataaac-gaaacagttgaccaagtagaaaatttcaa 256 ||||||| ||||||||||||||||| |||| ||||||||| | | | ||||||||||||| Sbjct: 30991839 agaatctccaaatgcacacatttgacaaacagaaacagttcatcgactagaaaatttcaa 30991780 Query: 257 atgagggtagcagaact-gcatgcataacaaaggttta 293 || | ||||||||||| | ||||||||||| |||||| Sbjct: 30991779 ataggagtagcagaactgggatgcataacaacggttta 30991742
>dbj|AK106078.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-A04, full insert sequence Length = 1048 Score = 111 bits (56), Expect = 2e-21 Identities = 89/100 (89%) Strand = Plus / Minus Query: 396 agtatttgatcggggccaggatctccagctgagttcccaacttctcctcggctgccttct 455 ||||||||||||| || || ||||||||||||| |||| |||||||||||||||||||| Sbjct: 702 agtatttgatcggagcaagaatctccagctgaggacccagcttctcctcggctgccttct 643 Query: 456 cggccttgacgcggagcttcgccagctgctttctcctgtc 495 | |||||||| || ||||||||||| ||||| |||||||| Sbjct: 642 cagccttgacacgcagcttcgccagttgcttcctcctgtc 603 Score = 75.8 bits (38), Expect = 1e-10 Identities = 85/98 (86%), Gaps = 2/98 (2%) Strand = Plus / Minus Query: 198 agaatcttcaaatgcacacatttgataaac-gaaacagttgaccaagtagaaaatttcaa 256 ||||||| ||||||||||||||||| |||| ||||||||| | | | ||||||||||||| Sbjct: 895 agaatctccaaatgcacacatttgacaaacagaaacagttcatcgactagaaaatttcaa 836 Query: 257 atgagggtagcagaact-gcatgcataacaaaggttta 293 || | ||||||||||| | ||||||||||| |||||| Sbjct: 835 ataggagtagcagaactgggatgcataacaacggttta 798
>dbj|AK103893.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033150E09, full insert sequence Length = 943 Score = 111 bits (56), Expect = 2e-21 Identities = 89/100 (89%) Strand = Plus / Minus Query: 396 agtatttgatcggggccaggatctccagctgagttcccaacttctcctcggctgccttct 455 ||||||||||||| || || ||||||||||||| |||| |||||||||||||||||||| Sbjct: 702 agtatttgatcggagcaagaatctccagctgaggacccagcttctcctcggctgccttct 643 Query: 456 cggccttgacgcggagcttcgccagctgctttctcctgtc 495 | |||||||| || ||||||||||| ||||| |||||||| Sbjct: 642 cagccttgacacgcagcttcgccagttgcttcctcctgtc 603 Score = 75.8 bits (38), Expect = 1e-10 Identities = 85/98 (86%), Gaps = 2/98 (2%) Strand = Plus / Minus Query: 198 agaatcttcaaatgcacacatttgataaac-gaaacagttgaccaagtagaaaatttcaa 256 ||||||| ||||||||||||||||| |||| ||||||||| | | | ||||||||||||| Sbjct: 895 agaatctccaaatgcacacatttgacaaacagaaacagttcatcgactagaaaatttcaa 836 Query: 257 atgagggtagcagaact-gcatgcataacaaaggttta 293 || | ||||||||||| | ||||||||||| |||||| Sbjct: 835 ataggagtagcagaactgggatgcataacaacggttta 798
>gb|AF503433.1| Sorghum bicolor BAC 170F8, complete sequence Length = 142376 Score = 105 bits (53), Expect = 1e-19 Identities = 86/97 (88%) Strand = Plus / Minus Query: 396 agtatttgatcggggccaggatctccagctgagttcccaacttctcctcggctgccttct 455 |||||||||||||||| || ||||||||||||| ||||| |||||||||||||| ||||| Sbjct: 70475 agtatttgatcggggcaagaatctccagctgagatcccagcttctcctcggctgtcttct 70416 Query: 456 cggccttgacgcggagcttcgccagctgctttctcct 492 | |||||||| || ||||| ||||| ||||| ||||| Sbjct: 70415 cagccttgacacgcagcttggccagttgcttcctcct 70379
>gb|BT016389.1| Zea mays clone Contig222 mRNA sequence Length = 880 Score = 87.7 bits (44), Expect = 3e-14 Identities = 74/84 (88%) Strand = Plus / Minus Query: 396 agtatttgatcggggccaggatctccagctgagttcccaacttctcctcggctgccttct 455 |||| ||||| ||||| || ||||||| ||||| ||||||||||||||||||||||||| Sbjct: 678 agtacttgataggggcaagaatctccaactgagaccccaacttctcctcggctgccttct 619 Query: 456 cggccttgacgcggagcttcgcca 479 |||||||||| || ||||| |||| Sbjct: 618 cggccttgacacgcagcttggcca 595
>gb|AY109365.1| Zea mays CL4861_1 mRNA sequence Length = 1506 Score = 87.7 bits (44), Expect = 3e-14 Identities = 74/84 (88%) Strand = Plus / Minus Query: 396 agtatttgatcggggccaggatctccagctgagttcccaacttctcctcggctgccttct 455 |||| ||||| ||||| || ||||||| ||||| ||||||||||||||||||||||||| Sbjct: 1166 agtacttgataggggcaagaatctccaactgagaccccaacttctcctcggctgccttct 1107 Query: 456 cggccttgacgcggagcttcgcca 479 |||||||||| || ||||| |||| Sbjct: 1106 cggccttgacacgcagcttggcca 1083
>gb|DQ200397.1| Solanum tuberosum clone 070F10 60S ribosomal protein L13a-like protein mRNA, complete cds Length = 848 Score = 54.0 bits (27), Expect = 4e-04 Identities = 54/63 (85%) Strand = Plus / Minus Query: 436 cttctcctcggctgccttctcggccttgacgcggagcttcgccagctgctttctcctgtc 495 ||||||||| || |||||||||||||| || | ||| || |||| |||||||||||| || Sbjct: 618 cttctcctcagcagccttctcggccttaaccctgagtttggccaactgctttctcctctc 559 Query: 496 gta 498 ||| Sbjct: 558 gta 556
>gb|AC140724.4| Mus musculus chromosome 8, clone RP24-291N1, complete sequence Length = 159182 Score = 48.1 bits (24), Expect = 0.028 Identities = 24/24 (100%) Strand = Plus / Minus Query: 309 taacacagagttaccaaactactt 332 |||||||||||||||||||||||| Sbjct: 85840 taacacagagttaccaaactactt 85817
>gb|AC134323.3| Mus musculus BAC clone RP24-512P7 from chromosome 8, complete sequence Length = 176667 Score = 48.1 bits (24), Expect = 0.028 Identities = 24/24 (100%) Strand = Plus / Plus Query: 309 taacacagagttaccaaactactt 332 |||||||||||||||||||||||| Sbjct: 144654 taacacagagttaccaaactactt 144677
>ref|XM_456551.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0A05302g) partial mRNA Length = 681 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 192 ttcacaagaatcttcaaatgc 212 ||||||||||||||||||||| Sbjct: 252 ttcacaagaatcttcaaatgc 232
>gb|AY498745.1| Capsicum annuum 60S ribosomal protein L13a (RpL13a) mRNA, complete cds Length = 797 Score = 42.1 bits (21), Expect = 1.7 Identities = 49/57 (85%), Gaps = 1/57 (1%) Strand = Plus / Minus Query: 436 cttctcctcggctgccttctcggccttgacgcggagcttcgccagctgctttctcct 492 |||||||||||| ||||| || ||||| || | ||| || ||||||||||||||||| Sbjct: 644 cttctcctcggcagcctt-tcagccttaaccctgagtttggccagctgctttctcct 589
>ref|XM_673595.1| Plasmodium berghei strain ANKA hypothetical protein (PB000517.00.0) partial mRNA Length = 6858 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 249 aatttcaaatgagggtagcagaact 273 |||||||||||||||||||| |||| Sbjct: 966 aatttcaaatgagggtagcacaact 990
>emb|CR382133.1| Debaryomyces hansenii chromosome A of strain CBS767 of Debaryomyces hansenii Length = 1249565 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 192 ttcacaagaatcttcaaatgc 212 ||||||||||||||||||||| Sbjct: 426048 ttcacaagaatcttcaaatgc 426028
>emb|CR733475.2|CNS0GSQA Tetraodon nigroviridis full-length cDNA Length = 1100 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 ttttcattagtactttgttt 31 |||||||||||||||||||| Sbjct: 887 ttttcattagtactttgttt 906
>emb|CR731957.2|CNS0GRQ2 Tetraodon nigroviridis full-length cDNA Length = 1109 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 ttttcattagtactttgttt 31 |||||||||||||||||||| Sbjct: 893 ttttcattagtactttgttt 912
>emb|CR730468.2|CNS0GQKP Tetraodon nigroviridis full-length cDNA Length = 1052 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 ttttcattagtactttgttt 31 |||||||||||||||||||| Sbjct: 872 ttttcattagtactttgttt 891
>emb|CR729970.2|CNS0GQ6W Tetraodon nigroviridis full-length cDNA Length = 1104 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 ttttcattagtactttgttt 31 |||||||||||||||||||| Sbjct: 891 ttttcattagtactttgttt 910
>emb|CR729778.2|CNS0GQ1K Tetraodon nigroviridis full-length cDNA Length = 1106 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 ttttcattagtactttgttt 31 |||||||||||||||||||| Sbjct: 891 ttttcattagtactttgttt 910
>emb|CR728728.1|CNS0GP8E Tetraodon nigroviridis full-length cDNA Length = 1084 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 ttttcattagtactttgttt 31 |||||||||||||||||||| Sbjct: 884 ttttcattagtactttgttt 903
>emb|CR726083.2|CNS0GN6X Tetraodon nigroviridis full-length cDNA Length = 1094 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 ttttcattagtactttgttt 31 |||||||||||||||||||| Sbjct: 877 ttttcattagtactttgttt 896
>emb|CR724163.1|CNS0GLPL Tetraodon nigroviridis full-length cDNA Length = 1094 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 ttttcattagtactttgttt 31 |||||||||||||||||||| Sbjct: 888 ttttcattagtactttgttt 907
>gb|AF098501.2| Caenorhabditis elegans fosmid H28G03, complete sequence Length = 44352 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 gtgaagagaaacggctacag 167 |||||||||||||||||||| Sbjct: 37621 gtgaagagaaacggctacag 37602
>emb|AL590092.6| Human DNA sequence from clone RP11-237C19 on chromosome 1, complete sequence Length = 109470 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 ttcaaatgcacacatttgat 223 |||||||||||||||||||| Sbjct: 19823 ttcaaatgcacacatttgat 19842
>ref|XM_504032.1| Yarrowia lipolytica CLIB122, YALI0E16665g predicted mRNA Length = 762 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 438 tctcctcggctgccttctcggcct 461 |||||| ||||||||||||||||| Sbjct: 574 tctccttggctgccttctcggcct 551
>gb|AC096051.7| Rattus norvegicus 10 BAC CH230-21G1 (Children's Hospital Oakland Research Institute) complete sequence Length = 216194 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 agatttttaatgtagctcag 94 |||||||||||||||||||| Sbjct: 176116 agatttttaatgtagctcag 176097
>emb|AL606466.12| Mouse DNA sequence from clone RP23-348N2 on chromosome 11 Contains the 5' end of the Ppp3r1 gene for protein phospatase 3 regulatory subunit B alpha isoform (calcineurin B, type I), a ribosomal protein L39 (Rpl39) pseudogene, a novel gene, the Plek gene for pleckstrin, a CUB domain and EGF-like repeat containing (Cegf) protein pseudogene and a CpG island, complete sequence Length = 201805 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 gattataacacttttcatta 20 |||||||||||||||||||| Sbjct: 112525 gattataacacttttcatta 112506
>gb|AC104232.5| Homo sapiens chromosome 8, clone RP11-1D12, complete sequence Length = 148933 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 aacagttgaccaagtagaaa 249 |||||||||||||||||||| Sbjct: 119755 aacagttgaccaagtagaaa 119736
>gb|AC092422.3| Homo sapiens chromosome 3 clone RP11-537O8, complete sequence Length = 188643 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 tttgtttattacagaagttg 44 |||||||||||||||||||| Sbjct: 134744 tttgtttattacagaagttg 134763
>gb|S48758.1| cyclin B [goldfish, oocytes, mRNA, 1425 nt] Length = 1425 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 cagaggtttcccaaaactga 368 |||||||||||||||||||| Sbjct: 815 cagaggtttcccaaaactga 796
>ref|NM_076487.2| Caenorhabditis elegans MTM (myotubularin) family member (mtm-5) (mtm-5) mRNA, complete cds Length = 5495 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 gtgaagagaaacggctacag 167 |||||||||||||||||||| Sbjct: 4145 gtgaagagaaacggctacag 4164
>gb|BC066506.1| Danio rerio tropomyosin 1 (alpha), mRNA (cDNA clone MGC:77009 IMAGE:6805687), complete cds Length = 1719 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 438 tctcctcggctgccttctcggcct 461 |||| ||||||||||||||||||| Sbjct: 441 tctcatcggctgccttctcggcct 418
>gb|BC045504.1| Danio rerio tropomyosin 1 (alpha), mRNA (cDNA clone MGC:55951 IMAGE:3819329), complete cds Length = 1217 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 438 tctcctcggctgccttctcggcct 461 |||| ||||||||||||||||||| Sbjct: 436 tctcatcggctgccttctcggcct 413
>gb|AC027035.5|AC027035 Arabidopsis thaliana chromosome 1 BAC T16O9 genomic sequence, complete sequence Length = 81609 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 tttgtttattacagaagttg 44 |||||||||||||||||||| Sbjct: 30402 tttgtttattacagaagttg 30383
>ref|XM_342921.2| PREDICTED: Rattus norvegicus similar to RIKEN cDNA 9330177P20 (LOC362602), mRNA Length = 2967 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 446 gctgccttctcggccttgac 465 |||||||||||||||||||| Sbjct: 2845 gctgccttctcggccttgac 2864
>gb|AC021045.2|AC021045 Arabidopsis thaliana chromosome I BAC T9L6 genomic sequence, complete sequence Length = 90632 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 tttgtttattacagaagttg 44 |||||||||||||||||||| Sbjct: 86666 tttgtttattacagaagttg 86647
>gb|AF273495.1|AF273495 Carassius auratus cyclin B mRNA, complete cds Length = 1501 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 cagaggtttcccaaaactga 368 |||||||||||||||||||| Sbjct: 877 cagaggtttcccaaaactga 858
>emb|AJ003216.1|ATAJ3216 Arabidopsis thaliana GTL2 gene Length = 3752 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 tttgtttattacagaagttg 44 |||||||||||||||||||| Sbjct: 1972 tttgtttattacagaagttg 1991
>emb|AJ003215.1|ATAJ3215 Arabidopsis thaliana GTL1 gene Length = 3061 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 tttgtttattacagaagttg 44 |||||||||||||||||||| Sbjct: 1141 tttgtttattacagaagttg 1160
>gb|AC151896.3| Mus musculus BAC clone RP24-501F15 from 18, complete sequence Length = 189528 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 380 agctctgatctctcttagtatttg 403 |||||||||||||||| ||||||| Sbjct: 30953 agctctgatctctcttggtatttg 30976
>ref|NM_200934.2| Danio rerio tropomyosin 1 (alpha) (tpm1), mRNA Length = 1719 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 438 tctcctcggctgccttctcggcct 461 |||| ||||||||||||||||||| Sbjct: 441 tctcatcggctgccttctcggcct 418
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 438 tctcctcggctgccttctcggcct 461 |||||| ||||||||||||||||| Sbjct: 1975373 tctccttggctgccttctcggcct 1975350
>gb|AC135965.2| Homo sapiens chromosome 3 clone RP11-6P8, complete sequence Length = 189173 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 tttgtttattacagaagttg 44 |||||||||||||||||||| Sbjct: 610 tttgtttattacagaagttg 629 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,959,178 Number of Sequences: 3902068 Number of extensions: 4959178 Number of successful extensions: 102500 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 102348 Number of HSP's gapped (non-prelim): 140 length of query: 498 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 476 effective length of database: 17,147,199,772 effective search space: 8162067091472 effective search space used: 8162067091472 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
