Clone Name | rbart28c08 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 410 bits (207), Expect = e-111 Identities = 333/375 (88%) Strand = Plus / Minus Query: 122 tggcaggtctggtgggggtgcccccagggactgcagctctcctactccgtcctcgaccag 181 ||||||||| ||||| || ||| |||| ||||||||||| || || ||||| ||||| || Sbjct: 437464 tggcaggtcaggtggaggcgcctccagcgactgcagctcgccgacgccgtcgtcgacgag 437405 Query: 182 gaaggccatggcgaggccccaggtgatgtgcacatccagatggcagtgcatcagccacac 241 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 437404 gaaggccatggcgaggccccaggtgatgtgcacgtcgagatggcagtgcatcagccacac 437345 Query: 242 cccagggttgtcagcgacgaaccggatgacagcccacccgttcactgggacgcccaccgt 301 ||| |||||||| || |||||||| || || |||||||||||||| || ||||||||||| Sbjct: 437344 ccccgggttgtccgccacgaaccgtatcaccgcccacccgttcaccggcacgcccaccgt 437285 Query: 302 gttcctcattggtgggtcatcgaggttgaactttgcggtgtcggtggcggcatcgaagtt 361 ||||||||| || || || || | ||||||||| || ||||||| | ||||||||||||| Sbjct: 437284 gttcctcatcggcggatcctccatgttgaacttggccgtgtcggcgccggcatcgaagtt 437225 Query: 362 gccgaagccctcagcaaggatgaagaagtcgtagccatggaggtggatagggtggttctc 421 ||| || ||||| || |||||| ||||||||||||| ||||||||||| ||||||||||| Sbjct: 437224 gcccaacccctcggcgaggatgtagaagtcgtagccgtggaggtggatggggtggttctc 437165 Query: 422 cccggcgaagatgttggtgccctggagcacgatctgcaccacggagccgtacttgagctt 481 ||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||| Sbjct: 437164 gccggcgaagatgttggtgccctggagcaccacctgcacggcggagccgtacttgagctt 437105 Query: 482 gtacaccttggtgcc 496 ||||||||||||||| Sbjct: 437104 gtacaccttggtgcc 437090 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 358 agttgccgaagccctcagcaaggatgaagaagtcgtagccatggaggtggatagggtggt 417 ||||||||||||||| || |||| |||||||| | ||||||||||||| || |||||| Sbjct: 8962008 agttgccgaagccctgtgcgaggacgaagaagttgaagccatggaggtgcatcgggtggc 8961949 Query: 418 tctcc 422 ||||| Sbjct: 8961948 tctcc 8961944 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 243 ccagggttgtcagcgacgaaccggatgacagccca 277 ||||| ||||| |||||||| |||||||||||||| Sbjct: 9075274 ccaggattgtcggcgacgaagcggatgacagccca 9075240
>dbj|AK109523.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-F06, full insert sequence Length = 1973 Score = 410 bits (207), Expect = e-111 Identities = 333/375 (88%) Strand = Plus / Minus Query: 122 tggcaggtctggtgggggtgcccccagggactgcagctctcctactccgtcctcgaccag 181 ||||||||| ||||| || ||| |||| ||||||||||| || || ||||| ||||| || Sbjct: 1822 tggcaggtcaggtggaggcgcctccagcgactgcagctcgccgacgccgtcgtcgacgag 1763 Query: 182 gaaggccatggcgaggccccaggtgatgtgcacatccagatggcagtgcatcagccacac 241 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 1762 gaaggccatggcgaggccccaggtgatgtgcacgtcgagatggcagtgcatcagccacac 1703 Query: 242 cccagggttgtcagcgacgaaccggatgacagcccacccgttcactgggacgcccaccgt 301 ||| |||||||| || |||||||| || || |||||||||||||| || ||||||||||| Sbjct: 1702 ccccgggttgtccgccacgaaccgtatcaccgcccacccgttcaccggcacgcccaccgt 1643 Query: 302 gttcctcattggtgggtcatcgaggttgaactttgcggtgtcggtggcggcatcgaagtt 361 ||||||||| || || || || | ||||||||| || ||||||| | ||||||||||||| Sbjct: 1642 gttcctcatcggcggatcctccatgttgaacttggccgtgtcggcgccggcatcgaagtt 1583 Query: 362 gccgaagccctcagcaaggatgaagaagtcgtagccatggaggtggatagggtggttctc 421 ||| || ||||| || |||||| ||||||||||||| ||||||||||| ||||||||||| Sbjct: 1582 gcccaacccctcggcgaggatgtagaagtcgtagccgtggaggtggatggggtggttctc 1523 Query: 422 cccggcgaagatgttggtgccctggagcacgatctgcaccacggagccgtacttgagctt 481 ||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||| Sbjct: 1522 gccggcgaagatgttggtgccctggagcaccacctgcacggcggagccgtacttgagctt 1463 Query: 482 gtacaccttggtgcc 496 ||||||||||||||| Sbjct: 1462 gtacaccttggtgcc 1448
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 410 bits (207), Expect = e-111 Identities = 333/375 (88%) Strand = Plus / Minus Query: 122 tggcaggtctggtgggggtgcccccagggactgcagctctcctactccgtcctcgaccag 181 ||||||||| ||||| || ||| |||| ||||||||||| || || ||||| ||||| || Sbjct: 437464 tggcaggtcaggtggaggcgcctccagcgactgcagctcgccgacgccgtcgtcgacgag 437405 Query: 182 gaaggccatggcgaggccccaggtgatgtgcacatccagatggcagtgcatcagccacac 241 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 437404 gaaggccatggcgaggccccaggtgatgtgcacgtcgagatggcagtgcatcagccacac 437345 Query: 242 cccagggttgtcagcgacgaaccggatgacagcccacccgttcactgggacgcccaccgt 301 ||| |||||||| || |||||||| || || |||||||||||||| || ||||||||||| Sbjct: 437344 ccccgggttgtccgccacgaaccgtatcaccgcccacccgttcaccggcacgcccaccgt 437285 Query: 302 gttcctcattggtgggtcatcgaggttgaactttgcggtgtcggtggcggcatcgaagtt 361 ||||||||| || || || || | ||||||||| || ||||||| | ||||||||||||| Sbjct: 437284 gttcctcatcggcggatcctccatgttgaacttggccgtgtcggcgccggcatcgaagtt 437225 Query: 362 gccgaagccctcagcaaggatgaagaagtcgtagccatggaggtggatagggtggttctc 421 ||| || ||||| || |||||| ||||||||||||| ||||||||||| ||||||||||| Sbjct: 437224 gcccaacccctcggcgaggatgtagaagtcgtagccgtggaggtggatggggtggttctc 437165 Query: 422 cccggcgaagatgttggtgccctggagcacgatctgcaccacggagccgtacttgagctt 481 ||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||| Sbjct: 437164 gccggcgaagatgttggtgccctggagcaccacctgcacggcggagccgtacttgagctt 437105 Query: 482 gtacaccttggtgcc 496 ||||||||||||||| Sbjct: 437104 gtacaccttggtgcc 437090 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 358 agttgccgaagccctcagcaaggatgaagaagtcgtagccatggaggtggatagggtggt 417 ||||||||||||||| || |||| |||||||| | ||||||||||||| || |||||| Sbjct: 8961891 agttgccgaagccctgtgcgaggacgaagaagttgaagccatggaggtgcatcgggtggc 8961832 Query: 418 tctcc 422 ||||| Sbjct: 8961831 tctcc 8961827 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 243 ccagggttgtcagcgacgaaccggatgacagccca 277 ||||| ||||| |||||||| |||||||||||||| Sbjct: 9075159 ccaggattgtcggcgacgaagcggatgacagccca 9075125
>emb|BX000492.1|CNS08CDI Oryza sativa chromosome 12, . BAC OSJNBa0024J08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 141089 Score = 410 bits (207), Expect = e-111 Identities = 333/375 (88%) Strand = Plus / Plus Query: 122 tggcaggtctggtgggggtgcccccagggactgcagctctcctactccgtcctcgaccag 181 ||||||||| ||||| || ||| |||| ||||||||||| || || ||||| ||||| || Sbjct: 109308 tggcaggtcaggtggaggcgcctccagcgactgcagctcgccgacgccgtcgtcgacgag 109367 Query: 182 gaaggccatggcgaggccccaggtgatgtgcacatccagatggcagtgcatcagccacac 241 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 109368 gaaggccatggcgaggccccaggtgatgtgcacgtcgagatggcagtgcatcagccacac 109427 Query: 242 cccagggttgtcagcgacgaaccggatgacagcccacccgttcactgggacgcccaccgt 301 ||| |||||||| || |||||||| || || |||||||||||||| || ||||||||||| Sbjct: 109428 ccccgggttgtccgccacgaaccgtatcaccgcccacccgttcaccggcacgcccaccgt 109487 Query: 302 gttcctcattggtgggtcatcgaggttgaactttgcggtgtcggtggcggcatcgaagtt 361 ||||||||| || || || || | ||||||||| || ||||||| | ||||||||||||| Sbjct: 109488 gttcctcatcggcggatcctccatgttgaacttggccgtgtcggcgccggcatcgaagtt 109547 Query: 362 gccgaagccctcagcaaggatgaagaagtcgtagccatggaggtggatagggtggttctc 421 ||| || ||||| || |||||| ||||||||||||| ||||||||||| ||||||||||| Sbjct: 109548 gcccaacccctcggcgaggatgtagaagtcgtagccgtggaggtggatggggtggttctc 109607 Query: 422 cccggcgaagatgttggtgccctggagcacgatctgcaccacggagccgtacttgagctt 481 ||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||| Sbjct: 109608 gccggcgaagatgttggtgccctggagcaccacctgcacggcggagccgtacttgagctt 109667 Query: 482 gtacaccttggtgcc 496 ||||||||||||||| Sbjct: 109668 gtacaccttggtgcc 109682
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 400 bits (202), Expect = e-108 Identities = 331/374 (88%) Strand = Plus / Minus Query: 123 ggcaggtctggtgggggtgcccccagggactgcagctctcctactccgtcctcgaccagg 182 |||||||| ||||| || ||| |||| ||||||||||| || || ||||| ||||| ||| Sbjct: 395753 ggcaggtcgggtggaggcgcctccagcgactgcagctcgccgacgccgtcgtcgacgagg 395694 Query: 183 aaggccatggcgaggccccaggtgatgtgcacatccagatggcagtgcatcagccacacc 242 |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct: 395693 aaggccatggcgaggccccaggtgatgtgcacgtcgagatggcagtgcatcagccacacc 395634 Query: 243 ccagggttgtcagcgacgaaccggatgacagcccacccgttcactgggacgcccaccgtg 302 || |||||||| || |||||||| || || |||||||||||||| || |||||||||||| Sbjct: 395633 cccgggttgtccgccacgaaccgtatcaccgcccacccgttcaccggcacgcccaccgtg 395574 Query: 303 ttcctcattggtgggtcatcgaggttgaactttgcggtgtcggtggcggcatcgaagttg 362 |||||||| || ||||| || | ||||||||| | ||||||| | |||| ||||||||| Sbjct: 395573 ttcctcatcggcgggtcctccacgttgaacttgcccgtgtcggcgccggcgtcgaagttg 395514 Query: 363 ccgaagccctcagcaaggatgaagaagtcgtagccatggaggtggatagggtggttctcc 422 || || ||||| || |||||| ||||||||||||| ||||||||||| ||||||||||| Sbjct: 395513 cccaacccctcggcgaggatgtagaagtcgtagccgtggaggtggatggggtggttctcg 395454 Query: 423 ccggcgaagatgttggtgccctggagcacgatctgcaccacggagccgtacttgagcttg 482 ||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||| Sbjct: 395453 ccggcgaagatgttggtgccctggagcaccacctgcacggcggagccgtacttgagcttg 395394 Query: 483 tacaccttggtgcc 496 |||||||||||||| Sbjct: 395393 tacaccttggtgcc 395380 Score = 40.1 bits (20), Expect = 6.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 375 gcaaggatgaagaagtcgtagccatggaggtg 406 ||||||| ||||| ||| |||||||||||||| Sbjct: 24578386 gcaaggaggaagacgtcatagccatggaggtg 24578355
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 400 bits (202), Expect = e-108 Identities = 331/374 (88%) Strand = Plus / Minus Query: 123 ggcaggtctggtgggggtgcccccagggactgcagctctcctactccgtcctcgaccagg 182 |||||||| ||||| || ||| |||| ||||||||||| || || ||||| ||||| ||| Sbjct: 395753 ggcaggtcgggtggaggcgcctccagcgactgcagctcgccgacgccgtcgtcgacgagg 395694 Query: 183 aaggccatggcgaggccccaggtgatgtgcacatccagatggcagtgcatcagccacacc 242 |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct: 395693 aaggccatggcgaggccccaggtgatgtgcacgtcgagatggcagtgcatcagccacacc 395634 Query: 243 ccagggttgtcagcgacgaaccggatgacagcccacccgttcactgggacgcccaccgtg 302 || |||||||| || |||||||| || || |||||||||||||| || |||||||||||| Sbjct: 395633 cccgggttgtccgccacgaaccgtatcaccgcccacccgttcaccggcacgcccaccgtg 395574 Query: 303 ttcctcattggtgggtcatcgaggttgaactttgcggtgtcggtggcggcatcgaagttg 362 |||||||| || ||||| || | ||||||||| | ||||||| | |||| ||||||||| Sbjct: 395573 ttcctcatcggcgggtcctccacgttgaacttgcccgtgtcggcgccggcgtcgaagttg 395514 Query: 363 ccgaagccctcagcaaggatgaagaagtcgtagccatggaggtggatagggtggttctcc 422 || || ||||| || |||||| ||||||||||||| ||||||||||| ||||||||||| Sbjct: 395513 cccaacccctcggcgaggatgtagaagtcgtagccgtggaggtggatggggtggttctcg 395454 Query: 423 ccggcgaagatgttggtgccctggagcacgatctgcaccacggagccgtacttgagcttg 482 ||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||| Sbjct: 395453 ccggcgaagatgttggtgccctggagcaccacctgcacggcggagccgtacttgagcttg 395394 Query: 483 tacaccttggtgcc 496 |||||||||||||| Sbjct: 395393 tacaccttggtgcc 395380 Score = 40.1 bits (20), Expect = 6.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 375 gcaaggatgaagaagtcgtagccatggaggtg 406 ||||||| ||||| ||| |||||||||||||| Sbjct: 24890056 gcaaggaggaagacgtcatagccatggaggtg 24890025
>emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 164143 Score = 400 bits (202), Expect = e-108 Identities = 331/374 (88%) Strand = Plus / Minus Query: 123 ggcaggtctggtgggggtgcccccagggactgcagctctcctactccgtcctcgaccagg 182 |||||||| ||||| || ||| |||| ||||||||||| || || ||||| ||||| ||| Sbjct: 103071 ggcaggtcgggtggaggcgcctccagcgactgcagctcgccgacgccgtcgtcgacgagg 103012 Query: 183 aaggccatggcgaggccccaggtgatgtgcacatccagatggcagtgcatcagccacacc 242 |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct: 103011 aaggccatggcgaggccccaggtgatgtgcacgtcgagatggcagtgcatcagccacacc 102952 Query: 243 ccagggttgtcagcgacgaaccggatgacagcccacccgttcactgggacgcccaccgtg 302 || |||||||| || |||||||| || || |||||||||||||| || |||||||||||| Sbjct: 102951 cccgggttgtccgccacgaaccgtatcaccgcccacccgttcaccggcacgcccaccgtg 102892 Query: 303 ttcctcattggtgggtcatcgaggttgaactttgcggtgtcggtggcggcatcgaagttg 362 |||||||| || ||||| || | ||||||||| | ||||||| | |||| ||||||||| Sbjct: 102891 ttcctcatcggcgggtcctccacgttgaacttgcccgtgtcggcgccggcgtcgaagttg 102832 Query: 363 ccgaagccctcagcaaggatgaagaagtcgtagccatggaggtggatagggtggttctcc 422 || || ||||| || |||||| ||||||||||||| ||||||||||| ||||||||||| Sbjct: 102831 cccaacccctcggcgaggatgtagaagtcgtagccgtggaggtggatggggtggttctcg 102772 Query: 423 ccggcgaagatgttggtgccctggagcacgatctgcaccacggagccgtacttgagcttg 482 ||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||| Sbjct: 102771 ccggcgaagatgttggtgccctggagcaccacctgcacggcggagccgtacttgagcttg 102712 Query: 483 tacaccttggtgcc 496 |||||||||||||| Sbjct: 102711 tacaccttggtgcc 102698
>ref|NM_190416.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1704 Score = 137 bits (69), Expect = 4e-29 Identities = 117/133 (87%) Strand = Plus / Minus Query: 354 tcgaagttgccgaagccctcagcaaggatgaagaagtcgtagccatggaggtggataggg 413 |||||||||||||||||||| || |||||| ||||||||||||| |||| |||||| ||| Sbjct: 1463 tcgaagttgccgaagccctcggcgaggatgtagaagtcgtagccgtggatgtggatgggg 1404 Query: 414 tggttctccccggcgaagatgttggtgccctggagcacgatctgcaccacggagccgtac 473 ||||||||| | || |||| ||||| |||| || ||||||||||||||||||||| || Sbjct: 1403 tggttctccggcgagacgatgctggtgtcctgcaggacgatctgcaccacggagccgaac 1344 Query: 474 ttgagcttgtaca 486 ||||||||||||| Sbjct: 1343 ttgagcttgtaca 1331 Score = 129 bits (65), Expect = 9e-27 Identities = 101/113 (89%) Strand = Plus / Minus Query: 171 tcctcgaccaggaaggccatggcgaggccccaggtgatgtgcacatccagatggcagtgc 230 ||||| |||||||| ||||| || ||||||||||| |||||||| || |||||||| ||| Sbjct: 1646 tcctccaccaggaacgccattgccaggccccaggttatgtgcacgtcaagatggcaatgc 1587 Query: 231 atcagccacaccccagggttgtcagcgacgaaccggatgacagcccacccgtt 283 || |||||||||||||||||||| ||||||||||||||||| ||||| ||||| Sbjct: 1586 atgagccacaccccagggttgtcggcgacgaaccggatgacggcccagccgtt 1534
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 137 bits (69), Expect = 4e-29 Identities = 117/133 (87%) Strand = Plus / Minus Query: 354 tcgaagttgccgaagccctcagcaaggatgaagaagtcgtagccatggaggtggataggg 413 |||||||||||||||||||| || |||||| ||||||||||||| |||| |||||| ||| Sbjct: 35398109 tcgaagttgccgaagccctcggcgaggatgtagaagtcgtagccgtggatgtggatgggg 35398050 Query: 414 tggttctccccggcgaagatgttggtgccctggagcacgatctgcaccacggagccgtac 473 ||||||||| | || |||| ||||| |||| || ||||||||||||||||||||| || Sbjct: 35398049 tggttctccggcgagacgatgctggtgtcctgcaggacgatctgcaccacggagccgaac 35397990 Query: 474 ttgagcttgtaca 486 ||||||||||||| Sbjct: 35397989 ttgagcttgtaca 35397977 Score = 129 bits (65), Expect = 9e-27 Identities = 101/113 (89%) Strand = Plus / Minus Query: 171 tcctcgaccaggaaggccatggcgaggccccaggtgatgtgcacatccagatggcagtgc 230 ||||| |||||||| ||||| || ||||||||||| |||||||| || |||||||| ||| Sbjct: 35398292 tcctccaccaggaacgccattgccaggccccaggttatgtgcacgtcaagatggcaatgc 35398233 Query: 231 atcagccacaccccagggttgtcagcgacgaaccggatgacagcccacccgtt 283 || |||||||||||||||||||| ||||||||||||||||| ||||| ||||| Sbjct: 35398232 atgagccacaccccagggttgtcggcgacgaaccggatgacggcccagccgtt 35398180 Score = 54.0 bits (27), Expect = 4e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 356 gaagttgccgaagccctcagcaaggatgaagaagtcgtagccatggaggtggatagggtg 415 ||||||||||| ||||| || || | |||||||| | |||| ||||||||||| ||||| Sbjct: 36620277 gaagttgccgaggccctgggccagcacgaagaagttgaagccgtggaggtggatcgggtg 36620218 Query: 416 gttctcc 422 ||||||| Sbjct: 36620217 gttctcc 36620211
>dbj|AP003734.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1088C09 Length = 154084 Score = 137 bits (69), Expect = 4e-29 Identities = 117/133 (87%) Strand = Plus / Minus Query: 354 tcgaagttgccgaagccctcagcaaggatgaagaagtcgtagccatggaggtggataggg 413 |||||||||||||||||||| || |||||| ||||||||||||| |||| |||||| ||| Sbjct: 22058 tcgaagttgccgaagccctcggcgaggatgtagaagtcgtagccgtggatgtggatgggg 21999 Query: 414 tggttctccccggcgaagatgttggtgccctggagcacgatctgcaccacggagccgtac 473 ||||||||| | || |||| ||||| |||| || ||||||||||||||||||||| || Sbjct: 21998 tggttctccggcgagacgatgctggtgtcctgcaggacgatctgcaccacggagccgaac 21939 Query: 474 ttgagcttgtaca 486 ||||||||||||| Sbjct: 21938 ttgagcttgtaca 21926 Score = 129 bits (65), Expect = 9e-27 Identities = 101/113 (89%) Strand = Plus / Minus Query: 171 tcctcgaccaggaaggccatggcgaggccccaggtgatgtgcacatccagatggcagtgc 230 ||||| |||||||| ||||| || ||||||||||| |||||||| || |||||||| ||| Sbjct: 22241 tcctccaccaggaacgccattgccaggccccaggttatgtgcacgtcaagatggcaatgc 22182 Query: 231 atcagccacaccccagggttgtcagcgacgaaccggatgacagcccacccgtt 283 || |||||||||||||||||||| ||||||||||||||||| ||||| ||||| Sbjct: 22181 atgagccacaccccagggttgtcggcgacgaaccggatgacggcccagccgtt 22129
>dbj|AK105333.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-D07, full insert sequence Length = 1678 Score = 137 bits (69), Expect = 4e-29 Identities = 117/133 (87%) Strand = Plus / Minus Query: 354 tcgaagttgccgaagccctcagcaaggatgaagaagtcgtagccatggaggtggataggg 413 |||||||||||||||||||| || |||||| ||||||||||||| |||| |||||| ||| Sbjct: 1230 tcgaagttgccgaagccctcggcgaggatgtagaagtcgtagccgtggatgtggatgggg 1171 Query: 414 tggttctccccggcgaagatgttggtgccctggagcacgatctgcaccacggagccgtac 473 ||||||||| | || |||| ||||| |||| || ||||||||||||||||||||| || Sbjct: 1170 tggttctccggcgagacgatgctggtgtcctgcaggacgatctgcaccacggagccgaac 1111 Query: 474 ttgagcttgtaca 486 ||||||||||||| Sbjct: 1110 ttgagcttgtaca 1098 Score = 121 bits (61), Expect = 2e-24 Identities = 100/113 (88%) Strand = Plus / Minus Query: 171 tcctcgaccaggaaggccatggcgaggccccaggtgatgtgcacatccagatggcagtgc 230 ||||| |||||||| | ||| || ||||||||||| |||||||| || |||||||| ||| Sbjct: 1413 tcctccaccaggaacgtcattgccaggccccaggttatgtgcacgtcaagatggcaatgc 1354 Query: 231 atcagccacaccccagggttgtcagcgacgaaccggatgacagcccacccgtt 283 || |||||||||||||||||||| ||||||||||||||||| ||||| ||||| Sbjct: 1353 atgagccacaccccagggttgtcggcgacgaaccggatgacggcccagccgtt 1301
>dbj|AK071929.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072C02, full insert sequence Length = 2023 Score = 137 bits (69), Expect = 4e-29 Identities = 117/133 (87%) Strand = Plus / Minus Query: 354 tcgaagttgccgaagccctcagcaaggatgaagaagtcgtagccatggaggtggataggg 413 |||||||||||||||||||| || |||||| ||||||||||||| |||| |||||| ||| Sbjct: 1575 tcgaagttgccgaagccctcggcgaggatgtagaagtcgtagccgtggatgtggatgggg 1516 Query: 414 tggttctccccggcgaagatgttggtgccctggagcacgatctgcaccacggagccgtac 473 ||||||||| | || |||| ||||| |||| || ||||||||||||||||||||| || Sbjct: 1515 tggttctccggcgagacgatgctggtgtcctgcaggacgatctgcaccacggagccgaac 1456 Query: 474 ttgagcttgtaca 486 ||||||||||||| Sbjct: 1455 ttgagcttgtaca 1443 Score = 129 bits (65), Expect = 9e-27 Identities = 101/113 (89%) Strand = Plus / Minus Query: 171 tcctcgaccaggaaggccatggcgaggccccaggtgatgtgcacatccagatggcagtgc 230 ||||| |||||||| ||||| || ||||||||||| |||||||| || |||||||| ||| Sbjct: 1758 tcctccaccaggaacgccattgccaggccccaggttatgtgcacgtcaagatggcaatgc 1699 Query: 231 atcagccacaccccagggttgtcagcgacgaaccggatgacagcccacccgtt 283 || |||||||||||||||||||| ||||||||||||||||| ||||| ||||| Sbjct: 1698 atgagccacaccccagggttgtcggcgacgaaccggatgacggcccagccgtt 1646
>emb|Y13772.1|PTY13772 Populus trichocarpa mRNA for laccase, lac90 gene Length = 2080 Score = 67.9 bits (34), Expect = 3e-08 Identities = 118/146 (80%) Strand = Plus / Minus Query: 186 gccatggcgaggccccaggtgatgtgcacatccagatggcagtgcatcagccacacccca 245 |||||||| || ||||| |||||||| ||||||| || |||||||| |||||||| || Sbjct: 1701 gccatggccagaccccatgtgatgtgaacatccaagtgacagtgcattagccacacacct 1642 Query: 246 gggttgtcagcgacgaaccggatgacagcccacccgttcactgggacgcccaccgtgttc 305 ||||||||||| || || | || || ||||| || ||||| || || | || || ||| Sbjct: 1641 gggttgtcagcaacaaatctaataaccgcccatccattcacgggtactgcaactgtattc 1582 Query: 306 ctcattggtgggtcatcgaggttgaa 331 ||||||||||||||| | |||||||| Sbjct: 1581 ctcattggtgggtcaacaaggttgaa 1556
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 63.9 bits (32), Expect = 5e-07 Identities = 53/60 (88%) Strand = Plus / Minus Query: 222 tggcagtgcatcagccacaccccagggttgtcagcgacgaaccggatgacagcccacccg 281 |||||||||| |||||||||||| |||||||| || |||||||| | ||| ||||||||| Sbjct: 10417709 tggcagtgcaccagccacaccccggggttgtccgccacgaaccgcacgacggcccacccg 10417650 Score = 44.1 bits (22), Expect = 0.43 Identities = 43/50 (86%) Strand = Plus / Minus Query: 424 cggcgaagatgttggtgccctggagcacgatctgcaccacggagccgtac 473 ||||||||||| |||| |||||| |||||||||||||| | ||||||| Sbjct: 10417507 cggcgaagatgccggtgtcctggaagacgatctgcaccaccgcgccgtac 10417458
>gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0039F10, complete sequence Length = 139714 Score = 63.9 bits (32), Expect = 5e-07 Identities = 53/60 (88%) Strand = Plus / Minus Query: 222 tggcagtgcatcagccacaccccagggttgtcagcgacgaaccggatgacagcccacccg 281 |||||||||| |||||||||||| |||||||| || |||||||| | ||| ||||||||| Sbjct: 74262 tggcagtgcaccagccacaccccggggttgtccgccacgaaccgcacgacggcccacccg 74203 Score = 44.1 bits (22), Expect = 0.43 Identities = 43/50 (86%) Strand = Plus / Minus Query: 424 cggcgaagatgttggtgccctggagcacgatctgcaccacggagccgtac 473 ||||||||||| |||| |||||| |||||||||||||| | ||||||| Sbjct: 74060 cggcgaagatgccggtgtcctggaagacgatctgcaccaccgcgccgtac 74011
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 63.9 bits (32), Expect = 5e-07 Identities = 53/60 (88%) Strand = Plus / Minus Query: 222 tggcagtgcatcagccacaccccagggttgtcagcgacgaaccggatgacagcccacccg 281 |||||||||| |||||||||||| |||||||| || |||||||| | ||| ||||||||| Sbjct: 10415810 tggcagtgcaccagccacaccccggggttgtccgccacgaaccgcacgacggcccacccg 10415751 Score = 44.1 bits (22), Expect = 0.43 Identities = 43/50 (86%) Strand = Plus / Minus Query: 424 cggcgaagatgttggtgccctggagcacgatctgcaccacggagccgtac 473 ||||||||||| |||| |||||| |||||||||||||| | ||||||| Sbjct: 10415608 cggcgaagatgccggtgtcctggaagacgatctgcaccaccgcgccgtac 10415559
>emb|AL954154.5|CNS08CCS Oryza sativa chromosome 12, . BAC OSJNBb0072E04 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 151176 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 358 agttgccgaagccctcagcaaggatgaagaagtcgtagccatggaggtggatagggtggt 417 ||||||||||||||| || |||| |||||||| | ||||||||||||| || |||||| Sbjct: 150637 agttgccgaagccctgtgcgaggacgaagaagttgaagccatggaggtgcatcgggtggc 150578 Query: 418 tctcc 422 ||||| Sbjct: 150577 tctcc 150573
>emb|AL844496.4|CNS08CAT Oryza sativa chromosome 12, . BAC OSJNBb0026N09 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 135462 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 358 agttgccgaagccctcagcaaggatgaagaagtcgtagccatggaggtggatagggtggt 417 ||||||||||||||| || |||| |||||||| | ||||||||||||| || |||||| Sbjct: 30777 agttgccgaagccctgtgcgaggacgaagaagttgaagccatggaggtgcatcgggtggc 30718 Query: 418 tctcc 422 ||||| Sbjct: 30717 tctcc 30713
>gb|AF527604.1| Glycine max diphenol oxidase laccase gene, complete cds Length = 4615 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 354 tcgaagttgccgaagccctcagcaaggatgaagaagtcgtagccatggaggtggataggg 413 |||||||| ||||| ||||| |||| ||| |||| ||||| ||||| || ||||||||| Sbjct: 3988 tcgaagttcccgaaaccctctgcaacaatgtagaaatcgtacccatgaagatggataggg 3929 Query: 414 tggttctc 421 |||||||| Sbjct: 3928 tggttctc 3921
>gb|AY113187.2| Glycine max diphenol oxidase laccase mRNA, complete cds Length = 1770 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 354 tcgaagttgccgaagccctcagcaaggatgaagaagtcgtagccatggaggtggataggg 413 |||||||| ||||| ||||| |||| ||| |||| ||||| ||||| || ||||||||| Sbjct: 1529 tcgaagttcccgaaaccctctgcaacaatgtagaaatcgtacccatgaagatggataggg 1470 Query: 414 tggttctc 421 |||||||| Sbjct: 1469 tggttctc 1462
>emb|AJ234679.1|HVU234679 Hordeum vulgare genomic DNA fragment; clone MWG0961.uni Length = 510 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 450 acgatctgcaccacggagccgtacttgagcttgtacaccttggt 493 |||| |||||||||||||||| || |||||||||||| |||||| Sbjct: 2 acgacctgcaccacggagccgaacctgagcttgtacagcttggt 45
>ref|XM_463491.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1563 Score = 54.0 bits (27), Expect = 4e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 356 gaagttgccgaagccctcagcaaggatgaagaagtcgtagccatggaggtggatagggtg 415 ||||||||||| ||||| || || | |||||||| | |||| ||||||||||| ||||| Sbjct: 1323 gaagttgccgaggccctgggccagcacgaagaagttgaagccgtggaggtggatcgggtg 1264 Query: 416 gttctcc 422 ||||||| Sbjct: 1263 gttctcc 1257
>dbj|AP003242.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0414E03 Length = 139598 Score = 54.0 bits (27), Expect = 4e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 356 gaagttgccgaagccctcagcaaggatgaagaagtcgtagccatggaggtggatagggtg 415 ||||||||||| ||||| || || | |||||||| | |||| ||||||||||| ||||| Sbjct: 133652 gaagttgccgaggccctgggccagcacgaagaagttgaagccgtggaggtggatcgggtg 133593 Query: 416 gttctcc 422 ||||||| Sbjct: 133592 gttctcc 133586
>dbj|AP004072.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0529H11 Length = 165969 Score = 54.0 bits (27), Expect = 4e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 356 gaagttgccgaagccctcagcaaggatgaagaagtcgtagccatggaggtggatagggtg 415 ||||||||||| ||||| || || | |||||||| | |||| ||||||||||| ||||| Sbjct: 93543 gaagttgccgaggccctgggccagcacgaagaagttgaagccgtggaggtggatcgggtg 93484 Query: 416 gttctcc 422 ||||||| Sbjct: 93483 gttctcc 93477
>dbj|AK109431.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-A04, full insert sequence Length = 2032 Score = 54.0 bits (27), Expect = 4e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 356 gaagttgccgaagccctcagcaaggatgaagaagtcgtagccatggaggtggatagggtg 415 ||||||||||| ||||| || || | |||||||| | |||| ||||||||||| ||||| Sbjct: 1508 gaagttgccgaggccctgggccagcacgaagaagttgaagccgtggaggtggatcgggtg 1449 Query: 416 gttctcc 422 ||||||| Sbjct: 1448 gttctcc 1442
>dbj|AK065154.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002B17, full insert sequence Length = 1996 Score = 54.0 bits (27), Expect = 4e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 356 gaagttgccgaagccctcagcaaggatgaagaagtcgtagccatggaggtggatagggtg 415 ||||||||||| ||||| || || | |||||||| | |||| ||||||||||| ||||| Sbjct: 1507 gaagttgccgaggccctgggccagcacgaagaagttgaagccgtggaggtggatcgggtg 1448 Query: 416 gttctcc 422 ||||||| Sbjct: 1447 gttctcc 1441
>dbj|AK061816.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-B06, full insert sequence Length = 1978 Score = 54.0 bits (27), Expect = 4e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 356 gaagttgccgaagccctcagcaaggatgaagaagtcgtagccatggaggtggatagggtg 415 ||||||||||| ||||| || || | |||||||| | |||| ||||||||||| ||||| Sbjct: 1486 gaagttgccgaggccctgggccagcacgaagaagttgaagccgtggaggtggatcgggtg 1427 Query: 416 gttctcc 422 ||||||| Sbjct: 1426 gttctcc 1420
>ref|XM_476345.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1752 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Minus Query: 216 tccagatggcagtgcatcagccacaccccagggttgtcagcgacgaaccggatgacagcc 275 ||||| ||||||||||| |||||||| || |||||||| || |||||||||||| ||| Sbjct: 1649 tccaggtggcagtgcatgagccacacgccggggttgtccgccgtgaaccggatgaccgcc 1590 Query: 276 ca 277 || Sbjct: 1589 ca 1588
>emb|Y13773.1|PTY13773 Populus trichocarpa mRNA for laccase, lac110 gene Length = 2109 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 208 tgtgcacatccagatggcagtgcatcagccacaccccagggttgtc 253 |||||||||| |||||||||||||| | ||||||||| || ||||| Sbjct: 1717 tgtgcacatcaagatggcagtgcatgaaccacacccctggattgtc 1672
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 216 tccagatggcagtgcatcagccacaccccagggttgtcagcgacgaaccggatgacagcc 275 ||||| ||||||||||| |||||||| || |||||||| || |||||||||||| ||| Sbjct: 57923 tccaggtggcagtgcatgagccacacgccggggttgtccgccgtgaaccggatgaccgcc 57982 Query: 276 ca 277 || Sbjct: 57983 ca 57984
>dbj|AP005869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1026C12 Length = 170240 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 216 tccagatggcagtgcatcagccacaccccagggttgtcagcgacgaaccggatgacagcc 275 ||||| ||||||||||| |||||||| || |||||||| || |||||||||||| ||| Sbjct: 57222 tccaggtggcagtgcatgagccacacgccggggttgtccgccgtgaaccggatgaccgcc 57281 Query: 276 ca 277 || Sbjct: 57282 ca 57283
>emb|AM086217.1| Zea mays mRNA for putative laccase (lac5 gene) Length = 2044 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 222 tggcagtgcatcagccacaccccagggttgtcagcgacgaaccgga 267 ||||| |||||||||||||| || |||||||| |||| |||||||| Sbjct: 1711 tggcaatgcatcagccacacgcccgggttgtcggcgaggaaccgga 1666
>gb|AY897209.1| Zea mays laccase 1 (LAC1) gene, complete cds Length = 3771 Score = 48.1 bits (24), Expect = 0.028 Identities = 36/40 (90%) Strand = Plus / Minus Query: 383 gaagaagtcgtagccatggaggtggatagggtggttctcc 422 |||||||| | |||| ||||||||||| |||||||||||| Sbjct: 2866 gaagaagttgaagccgtggaggtggatcgggtggttctcc 2827
>gb|AY897208.1| Zea mays laccase 1 (LAC1) mRNA, complete cds Length = 2289 Score = 48.1 bits (24), Expect = 0.028 Identities = 36/40 (90%) Strand = Plus / Minus Query: 383 gaagaagtcgtagccatggaggtggatagggtggttctcc 422 |||||||| | |||| ||||||||||| |||||||||||| Sbjct: 1470 gaagaagttgaagccgtggaggtggatcgggtggttctcc 1431
>gb|AY106856.1| Zea mays PCO061287 mRNA sequence Length = 719 Score = 48.1 bits (24), Expect = 0.028 Identities = 36/40 (90%) Strand = Plus / Minus Query: 383 gaagaagtcgtagccatggaggtggatagggtggttctcc 422 |||||||| | |||| ||||||||||| |||||||||||| Sbjct: 166 gaagaagttgaagccgtggaggtggatcgggtggttctcc 127
>emb|AL713903.5|CNS07YQ3 Oryza sativa chromosome 12, . BAC OJ1471_C07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 103007 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Plus Query: 243 ccagggttgtcagcgacgaaccggatgacagccca 277 ||||| ||||| |||||||| |||||||||||||| Sbjct: 42819 ccaggattgtcggcgacgaagcggatgacagccca 42853
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 44.1 bits (22), Expect = 0.43 Identities = 34/38 (89%) Strand = Plus / Plus Query: 222 tggcagtgcatcagccacaccccagggttgtcagcgac 259 ||||||||||||| |||||| ||||| ||||| ||||| Sbjct: 942635 tggcagtgcatcacccacacgccaggattgtcggcgac 942672
>emb|BX842574.1| Mycobacterium tuberculosis H37Rv complete genome; segment 3/13 Length = 349564 Score = 44.1 bits (22), Expect = 0.43 Identities = 34/38 (89%) Strand = Plus / Plus Query: 222 tggcagtgcatcagccacaccccagggttgtcagcgac 259 ||||||||||||| |||||| ||||| ||||| ||||| Sbjct: 258462 tggcagtgcatcacccacacgccaggattgtcggcgac 258499
>emb|BX248336.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 3/14 Length = 320050 Score = 44.1 bits (22), Expect = 0.43 Identities = 34/38 (89%) Strand = Plus / Plus Query: 222 tggcagtgcatcagccacaccccagggttgtcagcgac 259 ||||||||||||| |||||| ||||| ||||| ||||| Sbjct: 276490 tggcagtgcatcacccacacgccaggattgtcggcgac 276527
>emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete genome; segment 12/29 Length = 276800 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 431 gatgttggtgccctggagcacgatct 456 ||||||| |||||||||||||||||| Sbjct: 56757 gatgttgttgccctggagcacgatct 56782
>gb|AF132122.1|AF132122 Pinus taeda laccase (Lac4) mRNA, complete cds Length = 2208 Score = 44.1 bits (22), Expect = 0.43 Identities = 52/62 (83%) Strand = Plus / Minus Query: 387 aagtcgtagccatggaggtggatagggtggttctccccggcgaagatgttggtgccctgg 446 ||||| || |||||||| |||||||||||| | || || || |||||||| || |||||| Sbjct: 1552 aagtcatacccatggagatggatagggtggctttcacccgcaaagatgttcgttccctgg 1493 Query: 447 ag 448 || Sbjct: 1492 ag 1491 Score = 42.1 bits (21), Expect = 1.7 Identities = 108/137 (78%) Strand = Plus / Minus Query: 198 ccccaggtgatgtgcacatccagatggcagtgcatcagccacaccccagggttgtcagcg 257 ||||| || |||||||| |||| ||||| ||||||| ||| | ||||| ||||| || Sbjct: 1741 ccccatgttatgtgcacgtccaagtggcaatgcatcacccaagctccaggattgtcggca 1682 Query: 258 acgaaccggatgacagcccacccgttcactgggacgcccaccgtgttcctcattggtggg 317 ||||| | ||| ||||||| ||||| || |||||| ||| ||||| | |||||| || Sbjct: 1681 acgaatcttatggcagcccagccgttgaccgggacgttcacagtgttgcgcattggagga 1622 Query: 318 tcatcgaggttgaactt 334 || ||||||||||||| Sbjct: 1621 tcgacgaggttgaactt 1605
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 431 gatgttggtgccctggagcacgatct 456 ||||||| |||||||||||||||||| Sbjct: 4390819 gatgttgttgccctggagcacgatct 4390844
>ref|NM_190569.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1692 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 225 cagtgcatcagccacaccccagggttgtcagcgacgaaccg 265 |||||||| ||||||||||| || ||||| |||| |||||| Sbjct: 1580 cagtgcatgagccacaccccgggattgtcggcgaggaaccg 1540
>ref|XM_601171.2| PREDICTED: Bos taurus similar to SLIT-ROBO Rho GTPase-activating protein 1 (LOC522883), partial mRNA Length = 988 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 agcaaattggcaggtctggtg 135 ||||||||||||||||||||| Sbjct: 759 agcaaattggcaggtctggtg 779
>gb|AY645909.1|AY645907S3 Pinus taeda laccase-like multicopper oxidase 90 gene, exon 5 and partial cds Length = 812 Score = 42.1 bits (21), Expect = 1.7 Identities = 33/37 (89%) Strand = Plus / Minus Query: 380 gatgaagaagtcgtagccatggaggtggatagggtgg 416 |||| |||| |||||||| ||||| |||||||||||| Sbjct: 812 gatgtagaaatcgtagccgtggagatggatagggtgg 776
>gb|AF465469.1| Lolium perenne laccase LAC2-1 mRNA, complete cds Length = 2056 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 378 aggatgaagaagtcgtagccatggaggtg 406 |||| ||||||||||| |||||||||||| Sbjct: 1474 aggacgaagaagtcgtggccatggaggtg 1446
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 342 tcggtggcggcatcgaagttg 362 ||||||||||||||||||||| Sbjct: 2315037 tcggtggcggcatcgaagttg 2315017
>emb|Y18219.1|PTR18219 Populus trichocarpa GLac90 gene Length = 2767 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 303 ttcctcattggtgggtcatcgaggttgaa 331 |||||||||||||||||| | |||||||| Sbjct: 2312 ttcctcattggtgggtcaacaaggttgaa 2284
>emb|BX569692.1| Synechococcus sp. WH8102 complete genome; segment 4/7 Length = 345997 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 479 cttgtacaccttggtgcctgg 499 ||||||||||||||||||||| Sbjct: 57789 cttgtacaccttggtgcctgg 57769
>gb|AC147775.5| Medicago truncatula clone mth2-13d20, complete sequence Length = 117523 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 65 aataatcagtagaattgagcaacaa 89 ||||||| ||||||||||||||||| Sbjct: 80849 aataatccgtagaattgagcaacaa 80873
>gb|AF132120.1|AF132120 Pinus taeda laccase (Lac2) mRNA, complete cds Length = 1958 Score = 42.1 bits (21), Expect = 1.7 Identities = 54/65 (83%) Strand = Plus / Minus Query: 198 ccccaggtgatgtgcacatccagatggcagtgcatcagccacaccccagggttgtcagcg 257 ||||| || |||||||| |||| ||||||||||||| ||| | ||||| |||||||| Sbjct: 1714 ccccatgttatgtgcacgtccaagtggcagtgcatcacccaagctccaggattgtcagcc 1655 Query: 258 acgaa 262 ||||| Sbjct: 1654 acgaa 1650
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Minus Query: 236 ccacaccccagggttgtcagcgacgaaccggat 268 ||||||||| |||||||| || ||||||||||| Sbjct: 21550044 ccacaccccggggttgtccgccacgaaccggat 21550012
>dbj|AP005458.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0567G03 Length = 196834 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Minus Query: 236 ccacaccccagggttgtcagcgacgaaccggat 268 ||||||||| |||||||| || ||||||||||| Sbjct: 107228 ccacaccccggggttgtccgccacgaaccggat 107196
>dbj|D49538.1|ASNDHGO Aspergillus terreus DHGO gene for dihydrogeodin oxidase, complete cds (exon1-7) Length = 3041 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Minus Query: 222 tggcagtgcatcagccacaccccagggttgtca 254 |||||||||| ||||||| | |||||||||||| Sbjct: 2680 tggcagtgcaacagccacgctccagggttgtca 2648
>ref|NM_129597.2| Arabidopsis thaliana copper ion binding AT2G40370 mRNA, complete cds Length = 1778 Score = 40.1 bits (20), Expect = 6.8 Identities = 53/64 (82%) Strand = Plus / Minus Query: 214 catccagatggcagtgcatcagccacaccccagggttgtcagcgacgaaccggatgacag 273 |||| ||||| || ||||| | ||| |||||||||||||| |||| ||| | |||||| | Sbjct: 1655 catctagatgacaatgcattatccagaccccagggttgtctgcgatgaatctgatgacgg 1596 Query: 274 ccca 277 |||| Sbjct: 1595 ccca 1592
>ref|XM_463490.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1761 Score = 40.1 bits (20), Expect = 6.8 Identities = 50/60 (83%) Strand = Plus / Minus Query: 221 atggcagtgcatcagccacaccccagggttgtcagcgacgaaccggatgacagcccaccc 280 |||||||||||| ||||| || ||||| || |||||||| |||||||| |||||||| Sbjct: 1653 atggcagtgcatggcccacattcctgggttatcggcgacgaagcggatgactgcccaccc 1594
>gb|AE014843.1| Plasmodium falciparum 3D7 chromosome 11 section 8 of 8 of the complete sequence Length = 271546 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 ctttgacttcttcagcaaat 121 |||||||||||||||||||| Sbjct: 190356 ctttgacttcttcagcaaat 190337
>ref|XM_953405.1| Neurospora crassa OR74A hypothetical protein (NCU09279.1) partial mRNA Length = 1572 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 389 gtcgtagccatggaggtggatagg 412 ||||| |||||||||||||||||| Sbjct: 1206 gtcgtggccatggaggtggatagg 1183
>ref|XM_331970.1| Neurospora crassa OR74A hypothetical protein (NCU09279.1) partial mRNA Length = 1572 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 389 gtcgtagccatggaggtggatagg 412 ||||| |||||||||||||||||| Sbjct: 1206 gtcgtggccatggaggtggatagg 1183
>gb|AF202180.3| Plasmodium falciparum erythrocyte membrane-associated giant protein antigen 332 gene, complete cds Length = 16377 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 ctttgacttcttcagcaaat 121 |||||||||||||||||||| Sbjct: 4960 ctttgacttcttcagcaaat 4941
>gb|AY362758.1| Cutandia memphitica granule-bound starch synthase I gene, partial cds Length = 1122 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 437 ggtgccctggagcacgatctgcac 460 ||||||| |||||||||||||||| Sbjct: 382 ggtgcccaggagcacgatctgcac 359
>gb|AC113249.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0041L19, complete sequence Length = 155086 Score = 40.1 bits (20), Expect = 6.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 375 gcaaggatgaagaagtcgtagccatggaggtg 406 ||||||| ||||| ||| |||||||||||||| Sbjct: 55288 gcaaggaggaagacgtcatagccatggaggtg 55257
>gb|AC105024.8| Homo sapiens chromosome 17, clone CTD-2132N18, complete sequence Length = 147662 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 tgcccccagggactgcagct 159 |||||||||||||||||||| Sbjct: 83533 tgcccccagggactgcagct 83552
>gb|AC097273.3| Genomic sequence for Mus musculus, clone RP23-118N13, complete sequence Length = 211657 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 cagccacaccccagggttgt 252 |||||||||||||||||||| Sbjct: 175842 cagccacaccccagggttgt 175823
>gb|AF506030.1| Arabidopsis thaliana laccase (lac1) mRNA, complete cds Length = 1782 Score = 40.1 bits (20), Expect = 6.8 Identities = 53/64 (82%) Strand = Plus / Minus Query: 214 catccagatggcagtgcatcagccacaccccagggttgtcagcgacgaaccggatgacag 273 |||| ||||| || ||||| | ||| |||||||||||||| |||| ||| | |||||| | Sbjct: 1655 catctagatgacaatgcattatccagaccccagggttgtctgcgatgaatctgatgacgg 1596 Query: 274 ccca 277 |||| Sbjct: 1595 ccca 1592
>dbj|AK128007.1| Homo sapiens cDNA FLJ46126 fis, clone TESTI2041362 Length = 2085 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 tgcccccagggactgcagct 159 |||||||||||||||||||| Sbjct: 1560 tgcccccagggactgcagct 1541
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome Length = 6260361 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 tggcaggtctggtgggggtg 141 |||||||||||||||||||| Sbjct: 3458562 tggcaggtctggtgggggtg 3458543
>emb|BX640495.10| Zebrafish DNA sequence from clone CH211-107H7 in linkage group 20, complete sequence Length = 73842 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 aatgaatcgaatgtaaataa 23 |||||||||||||||||||| Sbjct: 57492 aatgaatcgaatgtaaataa 57473
>dbj|AK066963.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093P21, full insert sequence Length = 2095 Score = 40.1 bits (20), Expect = 6.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 375 gcaaggatgaagaagtcgtagccatggaggtg 406 ||||||| ||||| ||| |||||||||||||| Sbjct: 1543 gcaaggaggaagacgtcatagccatggaggtg 1512
>gb|AF079289.1|AF079289 Lygeum spartum granule-bound starch synthase (waxy) gene, partial cds Length = 1184 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 437 ggtgccctggagcacgatctgcac 460 ||||||| |||||||||||||||| Sbjct: 423 ggtgcccaggagcacgatctgcac 400
>gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta H, complete genome Length = 1751377 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 tgatgtgcacatccagatgg 224 |||||||||||||||||||| Sbjct: 532336 tgatgtgcacatccagatgg 532317
>gb|AC003104.1|AC003104 Homo sapiens chromosome 17, clone HCIT48C15, complete sequence Length = 100635 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 tgcccccagggactgcagct 159 |||||||||||||||||||| Sbjct: 76565 tgcccccagggactgcagct 76546
>emb|AM086214.1| Zea mays mRNA for putative laccase (lac2 gene) Length = 2188 Score = 40.1 bits (20), Expect = 6.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 336 gcggtgtcggtggcggcatcgaagttgccgaagccc 371 ||||||||| ||| ||| ||| |||||||||||||| Sbjct: 1628 gcggtgtcgttggtggcgtcgtagttgccgaagccc 1593 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,507,014 Number of Sequences: 3902068 Number of extensions: 3507014 Number of successful extensions: 66353 Number of sequences better than 10.0: 73 Number of HSP's better than 10.0 without gapping: 77 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65759 Number of HSP's gapped (non-prelim): 589 length of query: 499 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 477 effective length of database: 17,147,199,772 effective search space: 8179214291244 effective search space used: 8179214291244 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)