ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart28c06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51... 44 2e-04
2APG_ARATH (P40602) Anter-specific proline-rich protein APG precu... 40 0.003
3APG_BRANA (P40603) Anter-specific proline-rich protein APG (Prot... 38 0.010
4EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule... 33 0.25
5LRTM2_HUMAN (O43300) Leucine-rich repeat transmembrane neuronal ... 31 1.2
6LRTM2_MOUSE (Q8BGA3) Leucine-rich repeat transmembrane neuronal ... 30 2.1
7CARA_METTH (O27079) Carbamoyl-phosphate synthase small chain (EC... 30 2.1
8HLT_VIBPA (Q99289) Thermolabile hemolysin precursor (TL) (Lecith... 30 2.7
9ADA20_HUMAN (O43506) ADAM 20 precursor (EC 3.4.24.-) (A disinteg... 29 6.0
10HUTU_MOUSE (Q8VC12) Probable urocanate hydratase (EC 4.2.1.49) (... 28 7.9

>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)|
           (Alpha-L-fucoside fucohydrolase 2)
           (Alpha-1,2-fucosidase) (AtFXG1)
          Length = 372

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 14/86 (16%)
 Frame = -2

Query: 447 YSVVKELIDHPQRNGFTTSDTSCCGVDTK--------------VGGLCLPDSTPCRDRKA 310
           YS+  EL  H Q +GF  S  SCCG   K              V G  +    PC +   
Sbjct: 281 YSLKHELFVHAQGHGFKGSLVSCCGHGGKYNYNKGIGCGMKKIVKGKEVYIGKPCDEPDK 340

Query: 309 YVFWDAYHTSDAANRVIADRLWAGMT 232
            V WD  H + AAN+ I D++  G++
Sbjct: 341 AVVWDGVHFTQAANKFIFDKIAPGLS 366



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>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 39.7 bits (91), Expect = 0.003
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = -2

Query: 447 YSVVKELIDHPQRNGFTTSDTSCCGVDT-KVGGLCLPDSTP-CRDRKAYVFWDAYHTSDA 274
           Y+++ ++++ P   GF  +   CC       G LC   ++  C +  +Y+FWD  H +  
Sbjct: 456 YTIISQMLETPAAYGFEETKKPCCKTGLLSAGALCKKSTSKICPNTSSYLFWDGVHPTQR 515

Query: 273 ANRVI 259
           A + I
Sbjct: 516 AYKTI 520



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>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)|
           (Fragment)
          Length = 449

 Score = 38.1 bits (87), Expect = 0.010
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = -2

Query: 447 YSVVKELIDHPQRNGFTTSDTSCCGVDTKVGGLCLPDST--PCRDRKAYVFWDAYHTSDA 274
           YS+  ++++ P+  GF      CC +    GG+   + T     +  +Y+FWD  H S  
Sbjct: 373 YSIFSKMLESPEDYGFEEIKKPCCKIGLTKGGVFCKERTLKNMSNASSYLFWDGLHPSQR 432

Query: 273 ANRV 262
           A  +
Sbjct: 433 AYEI 436



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>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific|
           protein homolog) (Latex allergen Hev b 13)
          Length = 391

 Score = 33.5 bits (75), Expect = 0.25
 Identities = 23/87 (26%), Positives = 32/87 (36%), Gaps = 17/87 (19%)
 Frame = -2

Query: 447 YSVVKELIDHPQRNGFTTSDTSCCGVDTKVGGLCLPDSTPCRDR---------------- 316
           YSV   L   P+++GF     +CCG   K        + PC D                 
Sbjct: 283 YSVKYSLFSEPEKHGFEFPLITCCGYGGKYN---FSVTAPCGDTVTADDGTKIVVGSCAC 339

Query: 315 -KAYVFWDAYHTSDAANRVIADRLWAG 238
               V WD  H ++AAN    D++  G
Sbjct: 340 PSVRVNWDGAHYTEAANEYFFDQISTG 366



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>LRTM2_HUMAN (O43300) Leucine-rich repeat transmembrane neuronal protein 2|
           precursor (Leucine-rich repeat neuronal 2 protein)
          Length = 516

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
 Frame = +2

Query: 251 RSAMTRLAASEVWYASQNTYALRSRQGVESGRQRPPTLVSTPQH----DVSDVVNPFLCG 418
           RS  T   +  +W  S    AL S  G   GR     L  +P H    D+ D V+ F   
Sbjct: 301 RSLTTVGLSGNLWECSARICALASWLGSFQGRWEHSILCHSPDHTQGEDILDAVHGFQLC 360

Query: 419 WSMSSLTT 442
           W++S+  T
Sbjct: 361 WNLSTTVT 368



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>LRTM2_MOUSE (Q8BGA3) Leucine-rich repeat transmembrane neuronal protein 2|
           precursor
          Length = 515

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
 Frame = +2

Query: 251 RSAMTRLAASEVWYASQNTYALRSRQGVESGRQRPPTLVSTPQH----DVSDVVNPFLCG 418
           +S  T   +  +W  S    AL S  G   GR     L  +P H    D+ D V+ F   
Sbjct: 301 KSLTTVGLSGNLWECSPRVCALASWLGSFQGRWEHSILCHSPDHTQGEDILDAVHGFQLC 360

Query: 419 WSMSSLTT 442
           W++S+  T
Sbjct: 361 WNLSTTVT 368



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>CARA_METTH (O27079) Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase glutamine chain)
          Length = 356

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
 Frame = -2

Query: 414 QRNGFTTSDTSCCGVDTKVGGLCLPDSTP--CRDRKAYVFWDAYHTS------DAANRVI 259
           Q +GFT    S  G D ++  L L D TP     R+  VF   YH        D  N  I
Sbjct: 292 QNHGFTVDPDSVKGTDIEITQLNLNDGTPEGIEHRELPVFSVQYHPEAGPGPHDTVN--I 349

Query: 258 ADRLW 244
            DRLW
Sbjct: 350 FDRLW 354



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>HLT_VIBPA (Q99289) Thermolabile hemolysin precursor (TL) (Lecithin-dependent|
           haemolysin) (LDH) (Atypical phospholipase)
           (Phospholipase A2) (Lysophospholipase)
          Length = 418

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
 Frame = -2

Query: 447 YSVVKELIDHPQRNGFTTSDTSCCGVDTKVG-----GLCLPDSTPCRDRKAYVFWDAYHT 283
           +++ + L   P+ +GF  +   C  ++            L         + +VFWD  H 
Sbjct: 335 HALFETLTSAPEEHGFVNASDPCLDINRSSSVDYMYTHALRSECAASGAEKFVFWDVTHP 394

Query: 282 SDAANRVIADRL 247
           + A +R +A+++
Sbjct: 395 TTATHRYVAEKM 406



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>ADA20_HUMAN (O43506) ADAM 20 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 20)
          Length = 726

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 441 VVKELIDHPQRNGFTTSDTSCCGVDTKVGGLCLPDSTPCRD 319
           V+  LI+H     F  +DT+C G D  + G+ +PD    +D
Sbjct: 571 VIPNLIEHSTVQQFHLNDTTCWGTDYHL-GMAIPDIGEVKD 610



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>HUTU_MOUSE (Q8VC12) Probable urocanate hydratase (EC 4.2.1.49) (Urocanase)|
           (Imidazolonepropionate hydrolase)
          Length = 676

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 311 ALRSRQGVESGRQRPPTLVSTPQHDVSDVVNPF 409
           A+   Q + SG+ + P ++S   HDVS   +PF
Sbjct: 523 AVAINQAIASGKIKAPVVLSRDHHDVSGTDSPF 555


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,268,734
Number of Sequences: 219361
Number of extensions: 778094
Number of successful extensions: 2153
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2150
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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