>GAG_SIVG1 (Q02843) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24; Core protein p15]
          Length = 513

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = -3

Query: 485 EEREQKRKQATSRATFVQDLVLSTLFGDD 399
           EEREQ RKQ       V+D+ LS+LFG D
Sbjct: 487 EEREQTRKQKEKE---VEDVSLSSLFGGD 512

>DOS_ECOLI (P76129) Heme-regulated cyclic AMP phosphodiesterase (EC 3.1.4.-)|
           (Direct oxygen sensor protein)
          Length = 807

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = -2

Query: 234 ILFGLDTYTLIYGSLSRISLCRRIIGQRFLALYH--PFHRQGTIVCTNITGLLHTLH 70
           +L  L    + +  ++     R++ G    A+    PFH  G I+C NI  +L+  H
Sbjct: 242 VLAHLQNLVMTFSDITEERQIRQLEGNILAAMCSSPPFHEMGEIICRNIESVLNESH 298

>SRA21_CAEEL (O18690) Serpentine receptor class alpha-21 (Protein sra-21)|
          Length = 339

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
 Frame = -1

Query: 151 VPCLVPSF---SSSRDNRLYQHHRAVTYATQ-CNEKYRSSTCVEEI 26
           + CL+ S    ++  ++R+ Q +R+  +A++ CN  YRSS CV E+
Sbjct: 68  IACLLNSVVHQTTMLESRMRQTYRSFVFASEPCNLLYRSSDCVFEL 113

>YWCF_BACSU (P39604) Hypothetical protein ywcF|
          Length = 393

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -2

Query: 135 HPFHRQGTIVCTNITGL--LHTLHNAMRNIEVPPV 37
           HPF+R  +  C   T L  +HT  N   NI + PV
Sbjct: 317 HPFNRFASFFCVGYTALIVIHTFQNIGMNIGIMPV 351

>PFPN_ENTHI (Q07831) Nonpathogenic pore-forming peptide precursor (APNP)|
          Length = 97

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -2

Query: 123 RQGTIVCTNITGLLHTLHNAM 61
           RQG IVC   TGL++TL N +
Sbjct: 19  RQGPIVCNLCTGLINTLENLL 39

>LAMP3_MOUSE (Q7TST5) Lysosome-associated membrane glycoprotein 3 precursor|
           (LAMP-3) (Lysosomal-associated membrane protein 3)
           (DC-lysosome-associated membrane glycoprotein) (DC LAMP)
           (CD208 antigen)
          Length = 411

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -1

Query: 457 PLAGRPLCKTWSSPLYLETTECSNG 383
           PL  RP   TWSSP  + T E  NG
Sbjct: 204 PLVPRPTLVTWSSPAKIGTYEVLNG 228

>DOCK6_MOUSE (Q8VDR9) Dedicator of cytokinesis protein 6 (Fragment)|
          Length = 849

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = -1

Query: 475 NKSGNKPLAGRPLCKTWSSPLYLETTECSNGPTFSLLDGCFLHADSDRTAALCL 314
           N S    +AG PL            T  S GP+ +   GC L A+S RT  +C+
Sbjct: 13  NPSVAMAIAGGPLAPG-------SRTSISQGPSTAARSGCPLSAESSRTLLVCV 59


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,590,788
Number of Sequences: 219361
Number of extensions: 1535140
Number of successful extensions: 3393
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3393
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3362826254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)