Clone Name | rbart28c04 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_191972.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 195 Score = 111 bits (56), Expect = 2e-21 Identities = 77/84 (91%) Strand = Plus / Minus Query: 402 gtctccaaataaagtggagaggaccaggtcttgcacaaaggtcgccctgctagtggcttg 461 |||| |||||||||||||||| |||||| ||||||||||||| || ||| ||||||||| Sbjct: 192 gtcttcaaataaagtggagagcaccaggccttgcacaaaggttgctctgtcagtggcttg 133 Query: 462 tttccgcttttgttccctttcctc 485 |||||||||||||||||||||||| Sbjct: 132 tttccgcttttgttccctttcctc 109
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 111 bits (56), Expect = 2e-21 Identities = 77/84 (91%) Strand = Plus / Minus Query: 402 gtctccaaataaagtggagaggaccaggtcttgcacaaaggtcgccctgctagtggcttg 461 |||| |||||||||||||||| |||||| ||||||||||||| || ||| ||||||||| Sbjct: 27597800 gtcttcaaataaagtggagagcaccaggccttgcacaaaggttgctctgtcagtggcttg 27597741 Query: 462 tttccgcttttgttccctttcctc 485 |||||||||||||||||||||||| Sbjct: 27597740 tttccgcttttgttccctttcctc 27597717
>dbj|AP003264.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0485G01 Length = 167203 Score = 111 bits (56), Expect = 2e-21 Identities = 77/84 (91%) Strand = Plus / Minus Query: 402 gtctccaaataaagtggagaggaccaggtcttgcacaaaggtcgccctgctagtggcttg 461 |||| |||||||||||||||| |||||| ||||||||||||| || ||| ||||||||| Sbjct: 6366 gtcttcaaataaagtggagagcaccaggccttgcacaaaggttgctctgtcagtggcttg 6307 Query: 462 tttccgcttttgttccctttcctc 485 |||||||||||||||||||||||| Sbjct: 6306 tttccgcttttgttccctttcctc 6283
>dbj|AP003223.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0007F06 Length = 150817 Score = 111 bits (56), Expect = 2e-21 Identities = 77/84 (91%) Strand = Plus / Minus Query: 402 gtctccaaataaagtggagaggaccaggtcttgcacaaaggtcgccctgctagtggcttg 461 |||| |||||||||||||||| |||||| ||||||||||||| || ||| ||||||||| Sbjct: 65094 gtcttcaaataaagtggagagcaccaggccttgcacaaaggttgctctgtcagtggcttg 65035 Query: 462 tttccgcttttgttccctttcctc 485 |||||||||||||||||||||||| Sbjct: 65034 tttccgcttttgttccctttcctc 65011
>dbj|AK101922.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071L05, full insert sequence Length = 1158 Score = 111 bits (56), Expect = 2e-21 Identities = 77/84 (91%) Strand = Plus / Minus Query: 402 gtctccaaataaagtggagaggaccaggtcttgcacaaaggtcgccctgctagtggcttg 461 |||| |||||||||||||||| |||||| ||||||||||||| || ||| ||||||||| Sbjct: 791 gtcttcaaataaagtggagagcaccaggccttgcacaaaggttgctctgtcagtggcttg 732 Query: 462 tttccgcttttgttccctttcctc 485 |||||||||||||||||||||||| Sbjct: 731 tttccgcttttgttccctttcctc 708
>dbj|AK064817.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000E14, full insert sequence Length = 2618 Score = 111 bits (56), Expect = 2e-21 Identities = 77/84 (91%) Strand = Plus / Minus Query: 402 gtctccaaataaagtggagaggaccaggtcttgcacaaaggtcgccctgctagtggcttg 461 |||| |||||||||||||||| |||||| ||||||||||||| || ||| ||||||||| Sbjct: 2247 gtcttcaaataaagtggagagcaccaggccttgcacaaaggttgctctgtcagtggcttg 2188 Query: 462 tttccgcttttgttccctttcctc 485 |||||||||||||||||||||||| Sbjct: 2187 tttccgcttttgttccctttcctc 2164
>dbj|AK060901.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-D08, full insert sequence Length = 1364 Score = 111 bits (56), Expect = 2e-21 Identities = 77/84 (91%) Strand = Plus / Minus Query: 402 gtctccaaataaagtggagaggaccaggtcttgcacaaaggtcgccctgctagtggcttg 461 |||| |||||||||||||||| |||||| ||||||||||||| || ||| ||||||||| Sbjct: 1060 gtcttcaaataaagtggagagcaccaggccttgcacaaaggttgctctgtcagtggcttg 1001 Query: 462 tttccgcttttgttccctttcctc 485 |||||||||||||||||||||||| Sbjct: 1000 tttccgcttttgttccctttcctc 977
>dbj|AK061329.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-A03, full insert sequence Length = 1374 Score = 111 bits (56), Expect = 2e-21 Identities = 77/84 (91%) Strand = Plus / Minus Query: 402 gtctccaaataaagtggagaggaccaggtcttgcacaaaggtcgccctgctagtggcttg 461 |||| |||||||||||||||| |||||| ||||||||||||| || ||| ||||||||| Sbjct: 1118 gtcttcaaataaagtggagagcaccaggccttgcacaaaggttgctctgtcagtggcttg 1059 Query: 462 tttccgcttttgttccctttcctc 485 |||||||||||||||||||||||| Sbjct: 1058 tttccgcttttgttccctttcctc 1035
>gb|AY105163.1| Zea mays PCO060632 mRNA sequence Length = 1505 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Minus Query: 431 cttgcacaaaggtcgccctgctagtggcttgtttccgcttttgttccctttcctcgc 487 ||||||||||||| ||||| | ||||| |||||||||||||| ||||||||||||| Sbjct: 1099 cttgcacaaaggttgccctcccggtggcctgtttccgcttttgctccctttcctcgc 1043
>gb|AC113333.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1115_B06, complete sequence Length = 139139 Score = 48.1 bits (24), Expect = 0.027 Identities = 66/80 (82%) Strand = Plus / Plus Query: 403 tctccaaataaagtggagaggaccaggtcttgcacaaaggtcgccctgctagtggcttgt 462 |||||||||||||| | ||| | ||||||||||||||| || || ||| | | ||||| Sbjct: 112351 tctccaaataaagtagtgagcagcaggtcttgcacaaatgttgctctgacactcgcttgc 112410 Query: 463 ttccgcttttgttccctttc 482 ||||| || ||||||||||| Sbjct: 112411 ttccgtttctgttccctttc 112430
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 48.1 bits (24), Expect = 0.027 Identities = 66/80 (82%) Strand = Plus / Plus Query: 403 tctccaaataaagtggagaggaccaggtcttgcacaaaggtcgccctgctagtggcttgt 462 |||||||||||||| | ||| | ||||||||||||||| || || ||| | | ||||| Sbjct: 27747793 tctccaaataaagtagtgagcagcaggtcttgcacaaatgttgctctgacactcgcttgc 27747852 Query: 463 ttccgcttttgttccctttc 482 ||||| || ||||||||||| Sbjct: 27747853 ttccgtttctgttccctttc 27747872
>dbj|AK109438.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-F07, full insert sequence Length = 1324 Score = 48.1 bits (24), Expect = 0.027 Identities = 66/80 (82%) Strand = Plus / Minus Query: 403 tctccaaataaagtggagaggaccaggtcttgcacaaaggtcgccctgctagtggcttgt 462 |||||||||||||| | ||| | ||||||||||||||| || || ||| | | ||||| Sbjct: 886 tctccaaataaagtagtgagcagcaggtcttgcacaaatgttgctctgacactcgcttgc 827 Query: 463 ttccgcttttgttccctttc 482 ||||| || ||||||||||| Sbjct: 826 ttccgtttctgttccctttc 807
>dbj|AK061766.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-B10, full insert sequence Length = 1387 Score = 48.1 bits (24), Expect = 0.027 Identities = 66/80 (82%) Strand = Plus / Minus Query: 403 tctccaaataaagtggagaggaccaggtcttgcacaaaggtcgccctgctagtggcttgt 462 |||||||||||||| | ||| | ||||||||||||||| || || ||| | | ||||| Sbjct: 906 tctccaaataaagtagtgagcagcaggtcttgcacaaatgttgctctgacactcgcttgc 847 Query: 463 ttccgcttttgttccctttc 482 ||||| || ||||||||||| Sbjct: 846 ttccgtttctgttccctttc 827
>emb|AL356288.15| Human DNA sequence from clone RP11-6E3 on chromosome 1, complete sequence Length = 184469 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 213 atgtgtcaagcccaaataaaat 234 |||||||||||||||||||||| Sbjct: 33066 atgtgtcaagcccaaataaaat 33045
>gb|AC124909.3| Equus caballus clone CH241-91H15, complete sequence Length = 171421 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 57 ttctcattgcattgtgtagcgtatgt 82 |||||||||||||| ||||||||||| Sbjct: 124665 ttctcattgcattgggtagcgtatgt 124690
>gb|DP000020.1| Equus caballus target 1 genomic scaffold Length = 1907055 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 57 ttctcattgcattgtgtagcgtatgt 82 |||||||||||||| ||||||||||| Sbjct: 1138133 ttctcattgcattgggtagcgtatgt 1138158
>ref|XM_461927.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0G09482g) partial mRNA Length = 744 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 cttgacgatgaaaaggatggt 137 ||||||||||||||||||||| Sbjct: 610 cttgacgatgaaaaggatggt 630
>emb|AL135784.4| Human DNA sequence from clone RP4-687J17 on chromosome Xq26.1-26.3 Contains the 5' end of the IGSF1 gene for immunoglobulin superfamily member 1 and an olfactory receptor family pseudogene, complete sequence Length = 92697 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 126 gaaaaggatggtacaaggcaa 146 ||||||||||||||||||||| Sbjct: 14996 gaaaaggatggtacaaggcaa 14976
>emb|CR382139.1| Debaryomyces hansenii chromosome G of strain CBS767 of Debaryomyces hansenii Length = 2051428 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 117 cttgacgatgaaaaggatggt 137 ||||||||||||||||||||| Sbjct: 745229 cttgacgatgaaaaggatggt 745209
>gb|AC132443.3| Mus musculus BAC clone RP23-157C23 from 6, complete sequence Length = 179231 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 acatacaaggacctgagttct 22 ||||||||||||||||||||| Sbjct: 144977 acatacaaggacctgagttct 144957
>gb|AC164620.5| Mus musculus BAC clone RP23-64H20 from chromosome 18, complete sequence Length = 182838 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 atacaaggacctgagttctg 23 |||||||||||||||||||| Sbjct: 2089 atacaaggacctgagttctg 2070
>gb|AC121296.7| Mus musculus chromosome 14, clone RP23-286K8, complete sequence Length = 232049 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 acatacaaggacctgagttc 21 |||||||||||||||||||| Sbjct: 83836 acatacaaggacctgagttc 83855
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 gaatcagcgtgaaggaagca 358 |||||||||||||||||||| Sbjct: 2888993 gaatcagcgtgaaggaagca 2888974
>gb|AC116597.3| Mus musculus BAC clone RP24-409C23 from chromosome 18, complete sequence Length = 198519 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 atacaaggacctgagttctg 23 |||||||||||||||||||| Sbjct: 151117 atacaaggacctgagttctg 151098
>gb|AC115785.9| Mus musculus chromosome 12, clone RP23-170K17, complete sequence Length = 261721 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 atacaaggacctgagttctg 23 |||||||||||||||||||| Sbjct: 157174 atacaaggacctgagttctg 157155
>emb|AL590365.14| Human DNA sequence from clone RP11-455B2 on chromosome 10 Contains the gene for a novel thioesterase domain containing protein (FLJ11106), the gene for ribonuclease P (38kD) (RPP38), the gene for a novel protein (FLJ38219), the gene for a novel protein, the NMT2 gene for N-myristoyltransferase 2, the 3' end of the gene for a novel protein (LOC221061), a novel gene, a pseudogene similar to part of glyceraldehyde-3-phosphate dehydrogenase (GAPD)(G3PD,GAPDH), a peptidylprolyl isomerase A (cyclophilin A) (PPIA)(CYPA,CYPH) pseudogene, a NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa (NDUFA4)(MLRQ) pseudogene and three CpG islands, complete sequence Length = 194802 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 tttcttccacacaggtggaa 47 |||||||||||||||||||| Sbjct: 74950 tttcttccacacaggtggaa 74931
>dbj|AK143432.1| Mus musculus 2 days pregnant adult female ovary cDNA, RIKEN full-length enriched library, clone:E330038K21 product:unclassifiable, full insert sequence Length = 1897 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 atacaaggacctgagttctg 23 |||||||||||||||||||| Sbjct: 1027 atacaaggacctgagttctg 1046
>gb|AC128709.6| Homo sapiens 3 BAC RP13-616I3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 163031 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 53 atatttctcattgcattgtgtagc 76 ||||||||||||||||||| |||| Sbjct: 71824 atatttctcattgcattgtttagc 71801 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,044,955 Number of Sequences: 3902068 Number of extensions: 4044955 Number of successful extensions: 68208 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68106 Number of HSP's gapped (non-prelim): 98 length of query: 487 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 465 effective length of database: 17,147,199,772 effective search space: 7973447893980 effective search space used: 7973447893980 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)