ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart28c04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_191972.1| Oryza sativa (japonica cultivar-group), predic... 111 2e-21
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
3dbj|AP003264.3| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
4dbj|AP003223.3| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
5dbj|AK101922.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 2e-21
6dbj|AK064817.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 2e-21
7dbj|AK060901.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 2e-21
8dbj|AK061329.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 2e-21
9gb|AY105163.1| Zea mays PCO060632 mRNA sequence 66 1e-07
10gb|AC113333.2| Oryza sativa (japonica cultivar-group) chromosome... 48 0.027
11dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.027
12dbj|AK109438.2| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.027
13dbj|AK061766.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.027
14emb|AL356288.15| Human DNA sequence from clone RP11-6E3 on chrom... 44 0.42
15gb|AC124909.3| Equus caballus clone CH241-91H15, complete sequence 44 0.42
16gb|DP000020.1| Equus caballus target 1 genomic scaffold 44 0.42
17ref|XM_461927.1| Debaryomyces hansenii CBS767 hypothetical prote... 42 1.7
18emb|AL135784.4| Human DNA sequence from clone RP4-687J17 on chro... 42 1.7
19emb|CR382139.1| Debaryomyces hansenii chromosome G of strain CBS... 42 1.7
20gb|AC132443.3| Mus musculus BAC clone RP23-157C23 from 6, comple... 42 1.7
21gb|AC164620.5| Mus musculus BAC clone RP23-64H20 from chromosome... 40 6.6
22gb|AC121296.7| Mus musculus chromosome 14, clone RP23-286K8, com... 40 6.6
23gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 40 6.6
24gb|AC116597.3| Mus musculus BAC clone RP24-409C23 from chromosom... 40 6.6
25gb|AC115785.9| Mus musculus chromosome 12, clone RP23-170K17, co... 40 6.6
26emb|AL590365.14| Human DNA sequence from clone RP11-455B2 on chr... 40 6.6
27dbj|AK143432.1| Mus musculus 2 days pregnant adult female ovary ... 40 6.6
28gb|AC128709.6| Homo sapiens 3 BAC RP13-616I3 (Roswell Park Cance... 40 6.6

>ref|NM_191972.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 195

 Score =  111 bits (56), Expect = 2e-21
 Identities = 77/84 (91%)
 Strand = Plus / Minus

                                                                       
Query: 402 gtctccaaataaagtggagaggaccaggtcttgcacaaaggtcgccctgctagtggcttg 461
           |||| |||||||||||||||| |||||| ||||||||||||| || |||  |||||||||
Sbjct: 192 gtcttcaaataaagtggagagcaccaggccttgcacaaaggttgctctgtcagtggcttg 133

                                   
Query: 462 tttccgcttttgttccctttcctc 485
           ||||||||||||||||||||||||
Sbjct: 132 tttccgcttttgttccctttcctc 109



to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  111 bits (56), Expect = 2e-21
 Identities = 77/84 (91%)
 Strand = Plus / Minus

                                                                            
Query: 402      gtctccaaataaagtggagaggaccaggtcttgcacaaaggtcgccctgctagtggcttg 461
                |||| |||||||||||||||| |||||| ||||||||||||| || |||  |||||||||
Sbjct: 27597800 gtcttcaaataaagtggagagcaccaggccttgcacaaaggttgctctgtcagtggcttg 27597741

                                        
Query: 462      tttccgcttttgttccctttcctc 485
                ||||||||||||||||||||||||
Sbjct: 27597740 tttccgcttttgttccctttcctc 27597717



to top

>dbj|AP003264.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0485G01
          Length = 167203

 Score =  111 bits (56), Expect = 2e-21
 Identities = 77/84 (91%)
 Strand = Plus / Minus

                                                                        
Query: 402  gtctccaaataaagtggagaggaccaggtcttgcacaaaggtcgccctgctagtggcttg 461
            |||| |||||||||||||||| |||||| ||||||||||||| || |||  |||||||||
Sbjct: 6366 gtcttcaaataaagtggagagcaccaggccttgcacaaaggttgctctgtcagtggcttg 6307

                                    
Query: 462  tttccgcttttgttccctttcctc 485
            ||||||||||||||||||||||||
Sbjct: 6306 tttccgcttttgttccctttcctc 6283



to top

>dbj|AP003223.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0007F06
          Length = 150817

 Score =  111 bits (56), Expect = 2e-21
 Identities = 77/84 (91%)
 Strand = Plus / Minus

                                                                         
Query: 402   gtctccaaataaagtggagaggaccaggtcttgcacaaaggtcgccctgctagtggcttg 461
             |||| |||||||||||||||| |||||| ||||||||||||| || |||  |||||||||
Sbjct: 65094 gtcttcaaataaagtggagagcaccaggccttgcacaaaggttgctctgtcagtggcttg 65035

                                     
Query: 462   tttccgcttttgttccctttcctc 485
             ||||||||||||||||||||||||
Sbjct: 65034 tttccgcttttgttccctttcctc 65011



to top

>dbj|AK101922.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071L05, full
           insert sequence
          Length = 1158

 Score =  111 bits (56), Expect = 2e-21
 Identities = 77/84 (91%)
 Strand = Plus / Minus

                                                                       
Query: 402 gtctccaaataaagtggagaggaccaggtcttgcacaaaggtcgccctgctagtggcttg 461
           |||| |||||||||||||||| |||||| ||||||||||||| || |||  |||||||||
Sbjct: 791 gtcttcaaataaagtggagagcaccaggccttgcacaaaggttgctctgtcagtggcttg 732

                                   
Query: 462 tttccgcttttgttccctttcctc 485
           ||||||||||||||||||||||||
Sbjct: 731 tttccgcttttgttccctttcctc 708



to top

>dbj|AK064817.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000E14, full
            insert sequence
          Length = 2618

 Score =  111 bits (56), Expect = 2e-21
 Identities = 77/84 (91%)
 Strand = Plus / Minus

                                                                        
Query: 402  gtctccaaataaagtggagaggaccaggtcttgcacaaaggtcgccctgctagtggcttg 461
            |||| |||||||||||||||| |||||| ||||||||||||| || |||  |||||||||
Sbjct: 2247 gtcttcaaataaagtggagagcaccaggccttgcacaaaggttgctctgtcagtggcttg 2188

                                    
Query: 462  tttccgcttttgttccctttcctc 485
            ||||||||||||||||||||||||
Sbjct: 2187 tttccgcttttgttccctttcctc 2164



to top

>dbj|AK060901.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-D08, full
            insert sequence
          Length = 1364

 Score =  111 bits (56), Expect = 2e-21
 Identities = 77/84 (91%)
 Strand = Plus / Minus

                                                                        
Query: 402  gtctccaaataaagtggagaggaccaggtcttgcacaaaggtcgccctgctagtggcttg 461
            |||| |||||||||||||||| |||||| ||||||||||||| || |||  |||||||||
Sbjct: 1060 gtcttcaaataaagtggagagcaccaggccttgcacaaaggttgctctgtcagtggcttg 1001

                                    
Query: 462  tttccgcttttgttccctttcctc 485
            ||||||||||||||||||||||||
Sbjct: 1000 tttccgcttttgttccctttcctc 977



to top

>dbj|AK061329.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-A03, full
            insert sequence
          Length = 1374

 Score =  111 bits (56), Expect = 2e-21
 Identities = 77/84 (91%)
 Strand = Plus / Minus

                                                                        
Query: 402  gtctccaaataaagtggagaggaccaggtcttgcacaaaggtcgccctgctagtggcttg 461
            |||| |||||||||||||||| |||||| ||||||||||||| || |||  |||||||||
Sbjct: 1118 gtcttcaaataaagtggagagcaccaggccttgcacaaaggttgctctgtcagtggcttg 1059

                                    
Query: 462  tttccgcttttgttccctttcctc 485
            ||||||||||||||||||||||||
Sbjct: 1058 tttccgcttttgttccctttcctc 1035



to top

>gb|AY105163.1| Zea mays PCO060632 mRNA sequence
          Length = 1505

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                     
Query: 431  cttgcacaaaggtcgccctgctagtggcttgtttccgcttttgttccctttcctcgc 487
            ||||||||||||| ||||| |  ||||| |||||||||||||| |||||||||||||
Sbjct: 1099 cttgcacaaaggttgccctcccggtggcctgtttccgcttttgctccctttcctcgc 1043



to top

>gb|AC113333.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1115_B06,
              complete sequence
          Length = 139139

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 66/80 (82%)
 Strand = Plus / Plus

                                                                          
Query: 403    tctccaaataaagtggagaggaccaggtcttgcacaaaggtcgccctgctagtggcttgt 462
              |||||||||||||| | ||| | ||||||||||||||| || || |||  | | ||||| 
Sbjct: 112351 tctccaaataaagtagtgagcagcaggtcttgcacaaatgttgctctgacactcgcttgc 112410

                                  
Query: 463    ttccgcttttgttccctttc 482
              ||||| || |||||||||||
Sbjct: 112411 ttccgtttctgttccctttc 112430



to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 66/80 (82%)
 Strand = Plus / Plus

                                                                            
Query: 403      tctccaaataaagtggagaggaccaggtcttgcacaaaggtcgccctgctagtggcttgt 462
                |||||||||||||| | ||| | ||||||||||||||| || || |||  | | ||||| 
Sbjct: 27747793 tctccaaataaagtagtgagcagcaggtcttgcacaaatgttgctctgacactcgcttgc 27747852

                                    
Query: 463      ttccgcttttgttccctttc 482
                ||||| || |||||||||||
Sbjct: 27747853 ttccgtttctgttccctttc 27747872



to top

>dbj|AK109438.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-F07, full
           insert sequence
          Length = 1324

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 66/80 (82%)
 Strand = Plus / Minus

                                                                       
Query: 403 tctccaaataaagtggagaggaccaggtcttgcacaaaggtcgccctgctagtggcttgt 462
           |||||||||||||| | ||| | ||||||||||||||| || || |||  | | ||||| 
Sbjct: 886 tctccaaataaagtagtgagcagcaggtcttgcacaaatgttgctctgacactcgcttgc 827

                               
Query: 463 ttccgcttttgttccctttc 482
           ||||| || |||||||||||
Sbjct: 826 ttccgtttctgttccctttc 807



to top

>dbj|AK061766.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-B10, full
           insert sequence
          Length = 1387

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 66/80 (82%)
 Strand = Plus / Minus

                                                                       
Query: 403 tctccaaataaagtggagaggaccaggtcttgcacaaaggtcgccctgctagtggcttgt 462
           |||||||||||||| | ||| | ||||||||||||||| || || |||  | | ||||| 
Sbjct: 906 tctccaaataaagtagtgagcagcaggtcttgcacaaatgttgctctgacactcgcttgc 847

                               
Query: 463 ttccgcttttgttccctttc 482
           ||||| || |||||||||||
Sbjct: 846 ttccgtttctgttccctttc 827



to top

>emb|AL356288.15| Human DNA sequence from clone RP11-6E3 on chromosome 1, complete
             sequence
          Length = 184469

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 213   atgtgtcaagcccaaataaaat 234
             ||||||||||||||||||||||
Sbjct: 33066 atgtgtcaagcccaaataaaat 33045



to top

>gb|AC124909.3| Equus caballus clone CH241-91H15, complete sequence
          Length = 171421

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 57     ttctcattgcattgtgtagcgtatgt 82
              |||||||||||||| |||||||||||
Sbjct: 124665 ttctcattgcattgggtagcgtatgt 124690



to top

>gb|DP000020.1| Equus caballus target 1 genomic scaffold
          Length = 1907055

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 57      ttctcattgcattgtgtagcgtatgt 82
               |||||||||||||| |||||||||||
Sbjct: 1138133 ttctcattgcattgggtagcgtatgt 1138158



to top

>ref|XM_461927.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0G09482g)
           partial mRNA
          Length = 744

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 117 cttgacgatgaaaaggatggt 137
           |||||||||||||||||||||
Sbjct: 610 cttgacgatgaaaaggatggt 630



to top

>emb|AL135784.4| Human DNA sequence from clone RP4-687J17 on chromosome Xq26.1-26.3
             Contains the 5' end of the IGSF1 gene for immunoglobulin
             superfamily member 1 and an olfactory receptor family
             pseudogene, complete sequence
          Length = 92697

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 126   gaaaaggatggtacaaggcaa 146
             |||||||||||||||||||||
Sbjct: 14996 gaaaaggatggtacaaggcaa 14976



to top

>emb|CR382139.1| Debaryomyces hansenii chromosome G of strain CBS767 of Debaryomyces
              hansenii
          Length = 2051428

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 117    cttgacgatgaaaaggatggt 137
              |||||||||||||||||||||
Sbjct: 745229 cttgacgatgaaaaggatggt 745209



to top

>gb|AC132443.3| Mus musculus BAC clone RP23-157C23 from 6, complete sequence
          Length = 179231

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 2      acatacaaggacctgagttct 22
              |||||||||||||||||||||
Sbjct: 144977 acatacaaggacctgagttct 144957



to top

>gb|AC164620.5| Mus musculus BAC clone RP23-64H20 from chromosome 18, complete
            sequence
          Length = 182838

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 4    atacaaggacctgagttctg 23
            ||||||||||||||||||||
Sbjct: 2089 atacaaggacctgagttctg 2070



to top

>gb|AC121296.7| Mus musculus chromosome 14, clone RP23-286K8, complete sequence
          Length = 232049

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     acatacaaggacctgagttc 21
             ||||||||||||||||||||
Sbjct: 83836 acatacaaggacctgagttc 83855



to top

>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 339     gaatcagcgtgaaggaagca 358
               ||||||||||||||||||||
Sbjct: 2888993 gaatcagcgtgaaggaagca 2888974



to top

>gb|AC116597.3| Mus musculus BAC clone RP24-409C23 from chromosome 18, complete sequence
          Length = 198519

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 4      atacaaggacctgagttctg 23
              ||||||||||||||||||||
Sbjct: 151117 atacaaggacctgagttctg 151098



to top

>gb|AC115785.9| Mus musculus chromosome 12, clone RP23-170K17, complete sequence
          Length = 261721

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 4      atacaaggacctgagttctg 23
              ||||||||||||||||||||
Sbjct: 157174 atacaaggacctgagttctg 157155



to top

>emb|AL590365.14| Human DNA sequence from clone RP11-455B2 on chromosome 10 Contains the
             gene for a novel thioesterase domain containing protein
             (FLJ11106), the gene for ribonuclease P (38kD) (RPP38),
             the gene for a novel protein (FLJ38219), the gene for a
             novel protein, the NMT2 gene for N-myristoyltransferase 2,
             the 3' end of the gene for a novel protein (LOC221061), a
             novel gene, a pseudogene similar to part of
             glyceraldehyde-3-phosphate dehydrogenase
             (GAPD)(G3PD,GAPDH), a peptidylprolyl isomerase A
             (cyclophilin A) (PPIA)(CYPA,CYPH) pseudogene, a NADH
             dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa
             (NDUFA4)(MLRQ) pseudogene and three CpG islands, complete
             sequence
          Length = 194802

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    tttcttccacacaggtggaa 47
             ||||||||||||||||||||
Sbjct: 74950 tttcttccacacaggtggaa 74931



to top

>dbj|AK143432.1| Mus musculus 2 days pregnant adult female ovary cDNA, RIKEN
            full-length enriched library, clone:E330038K21
            product:unclassifiable, full insert sequence
          Length = 1897

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 4    atacaaggacctgagttctg 23
            ||||||||||||||||||||
Sbjct: 1027 atacaaggacctgagttctg 1046



to top

>gb|AC128709.6| Homo sapiens 3 BAC RP13-616I3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 163031

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 53    atatttctcattgcattgtgtagc 76
             ||||||||||||||||||| ||||
Sbjct: 71824 atatttctcattgcattgtttagc 71801


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,044,955
Number of Sequences: 3902068
Number of extensions: 4044955
Number of successful extensions: 68208
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68106
Number of HSP's gapped (non-prelim): 98
length of query: 487
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 465
effective length of database: 17,147,199,772
effective search space: 7973447893980
effective search space used: 7973447893980
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top