Clone Name | rbart28c03 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 38.2 bits (19), Expect = 0.67 Identities = 19/19 (100%) Strand = Plus / Minus Query: 2 acacaaaactggatcaatt 20 ||||||||||||||||||| Sbjct: 34078702 acacaaaactggatcaatt 34078684
>dbj|AP005295.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1695_D07 Length = 110585 Score = 38.2 bits (19), Expect = 0.67 Identities = 19/19 (100%) Strand = Plus / Minus Query: 2 acacaaaactggatcaatt 20 ||||||||||||||||||| Sbjct: 105977 acacaaaactggatcaatt 105959
>dbj|AP007227.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0032L17 Length = 165808 Score = 38.2 bits (19), Expect = 0.67 Identities = 19/19 (100%) Strand = Plus / Minus Query: 2 acacaaaactggatcaatt 20 ||||||||||||||||||| Sbjct: 6216 acacaaaactggatcaatt 6198
>emb|BX927351.14| Zebrafish DNA sequence from clone DKEY-59K9 in linkage group 17, complete sequence Length = 180081 Score = 36.2 bits (18), Expect = 2.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 7 aaactggatcaattacca 24 |||||||||||||||||| Sbjct: 82599 aaactggatcaattacca 82616
>gb|AC182644.4| Pan troglodytes BAC clone CH251-64L5 from chromosome 4, complete sequence Length = 157801 Score = 36.2 bits (18), Expect = 2.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 15 tcaattaccaagttcatg 32 |||||||||||||||||| Sbjct: 93261 tcaattaccaagttcatg 93278
>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence Length = 4744671 Score = 36.2 bits (18), Expect = 2.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 4 acaaaactggatcaatta 21 |||||||||||||||||| Sbjct: 3141873 acaaaactggatcaatta 3141856
>dbj|AB232923.1| Oryzias latipes hox gene cluster, complete cds, contains hoxDa Length = 225033 Score = 36.2 bits (18), Expect = 2.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 2 acacaaaactggatcaat 19 |||||||||||||||||| Sbjct: 71651 acacaaaactggatcaat 71668
>gb|AC104049.4| Homo sapiens chromosome 8, clone CTD-2313B19, complete sequence Length = 129819 Score = 36.2 bits (18), Expect = 2.7 Identities = 21/22 (95%) Strand = Plus / Minus Query: 4 acaaaactggatcaattaccaa 25 |||||||||||| ||||||||| Sbjct: 74539 acaaaactggatgaattaccaa 74518
>gb|AC090740.5| Homo sapiens chromosome 8, clone RP11-595O22, complete sequence Length = 184838 Score = 36.2 bits (18), Expect = 2.7 Identities = 21/22 (95%) Strand = Plus / Minus Query: 4 acaaaactggatcaattaccaa 25 |||||||||||| ||||||||| Sbjct: 180111 acaaaactggatgaattaccaa 180090
>gb|AC018692.9| Homo sapiens BAC clone RP11-555K2 from 4, complete sequence Length = 189789 Score = 36.2 bits (18), Expect = 2.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 15 tcaattaccaagttcatg 32 |||||||||||||||||| Sbjct: 9718 tcaattaccaagttcatg 9701
>gb|AC018687.6| Homo sapiens BAC clone RP11-462G22 from 4, complete sequence Length = 156378 Score = 36.2 bits (18), Expect = 2.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 15 tcaattaccaagttcatg 32 |||||||||||||||||| Sbjct: 57014 tcaattaccaagttcatg 56997
>gb|AC084534.1|CBRG22P10 Caenorhabditis briggsae cosmid G22P10, complete sequence Length = 38419 Score = 36.2 bits (18), Expect = 2.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 6 aaaactggatcaattacc 23 |||||||||||||||||| Sbjct: 5646 aaaactggatcaattacc 5663
>emb|BX649290.6| Zebrafish DNA sequence from clone DKEYP-10B2 in linkage group 17, complete sequence Length = 128837 Score = 36.2 bits (18), Expect = 2.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 7 aaactggatcaattacca 24 |||||||||||||||||| Sbjct: 69992 aaactggatcaattacca 69975
>gb|AC157495.2| Gallus gallus BAC clone CH261-13P20 from chromosome unknown, complete sequence Length = 228855 Score = 36.2 bits (18), Expect = 2.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 12 ggatcaattaccaagttc 29 |||||||||||||||||| Sbjct: 83029 ggatcaattaccaagttc 83046
>emb|CR848815.7| Zebrafish DNA sequence from clone CH211-197C11 in linkage group 15, complete sequence Length = 161902 Score = 36.2 bits (18), Expect = 2.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 2 acacaaaactggatcaat 19 |||||||||||||||||| Sbjct: 30634 acacaaaactggatcaat 30651 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 260,685 Number of Sequences: 3902068 Number of extensions: 260685 Number of successful extensions: 56877 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56823 Number of HSP's gapped (non-prelim): 54 length of query: 32 length of database: 17,233,045,268 effective HSP length: 20 effective length of query: 12 effective length of database: 17,155,003,908 effective search space: 205860046896 effective search space used: 205860046896 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)