ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart28c03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 0.67
2dbj|AP005295.3| Oryza sativa (japonica cultivar-group) genomic D... 38 0.67
3dbj|AP007227.2| Oryza sativa (japonica cultivar-group) genomic D... 38 0.67
4emb|BX927351.14| Zebrafish DNA sequence from clone DKEY-59K9 in ... 36 2.7
5gb|AC182644.4| Pan troglodytes BAC clone CH251-64L5 from chromos... 36 2.7
6emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, comp... 36 2.7
7dbj|AB232923.1| Oryzias latipes hox gene cluster, complete cds, ... 36 2.7
8gb|AC104049.4| Homo sapiens chromosome 8, clone CTD-2313B19, com... 36 2.7
9gb|AC090740.5| Homo sapiens chromosome 8, clone RP11-595O22, com... 36 2.7
10gb|AC018692.9| Homo sapiens BAC clone RP11-555K2 from 4, complet... 36 2.7
11gb|AC018687.6| Homo sapiens BAC clone RP11-462G22 from 4, comple... 36 2.7
12gb|AC084534.1|CBRG22P10 Caenorhabditis briggsae cosmid G22P10, c... 36 2.7
13emb|BX649290.6| Zebrafish DNA sequence from clone DKEYP-10B2 in ... 36 2.7
14gb|AC157495.2| Gallus gallus BAC clone CH261-13P20 from chromoso... 36 2.7
15emb|CR848815.7| Zebrafish DNA sequence from clone CH211-197C11 i... 36 2.7

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 0.67
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 2        acacaaaactggatcaatt 20
                |||||||||||||||||||
Sbjct: 34078702 acacaaaactggatcaatt 34078684



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>dbj|AP005295.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1695_D07
          Length = 110585

 Score = 38.2 bits (19), Expect = 0.67
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 2      acacaaaactggatcaatt 20
              |||||||||||||||||||
Sbjct: 105977 acacaaaactggatcaatt 105959



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>dbj|AP007227.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OSJNBa0032L17
          Length = 165808

 Score = 38.2 bits (19), Expect = 0.67
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 2    acacaaaactggatcaatt 20
            |||||||||||||||||||
Sbjct: 6216 acacaaaactggatcaatt 6198



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>emb|BX927351.14| Zebrafish DNA sequence from clone DKEY-59K9 in linkage group 17,
             complete sequence
          Length = 180081

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 7     aaactggatcaattacca 24
             ||||||||||||||||||
Sbjct: 82599 aaactggatcaattacca 82616



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>gb|AC182644.4| Pan troglodytes BAC clone CH251-64L5 from chromosome 4, complete
             sequence
          Length = 157801

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 15    tcaattaccaagttcatg 32
             ||||||||||||||||||
Sbjct: 93261 tcaattaccaagttcatg 93278



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>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence
          Length = 4744671

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 4       acaaaactggatcaatta 21
               ||||||||||||||||||
Sbjct: 3141873 acaaaactggatcaatta 3141856



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>dbj|AB232923.1| Oryzias latipes hox gene cluster, complete cds, contains hoxDa
          Length = 225033

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 2     acacaaaactggatcaat 19
             ||||||||||||||||||
Sbjct: 71651 acacaaaactggatcaat 71668



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>gb|AC104049.4| Homo sapiens chromosome 8, clone CTD-2313B19, complete sequence
          Length = 129819

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 4     acaaaactggatcaattaccaa 25
             |||||||||||| |||||||||
Sbjct: 74539 acaaaactggatgaattaccaa 74518



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>gb|AC090740.5| Homo sapiens chromosome 8, clone RP11-595O22, complete sequence
          Length = 184838

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 4      acaaaactggatcaattaccaa 25
              |||||||||||| |||||||||
Sbjct: 180111 acaaaactggatgaattaccaa 180090



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>gb|AC018692.9| Homo sapiens BAC clone RP11-555K2 from 4, complete sequence
          Length = 189789

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 15   tcaattaccaagttcatg 32
            ||||||||||||||||||
Sbjct: 9718 tcaattaccaagttcatg 9701



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>gb|AC018687.6| Homo sapiens BAC clone RP11-462G22 from 4, complete sequence
          Length = 156378

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 15    tcaattaccaagttcatg 32
             ||||||||||||||||||
Sbjct: 57014 tcaattaccaagttcatg 56997



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>gb|AC084534.1|CBRG22P10 Caenorhabditis briggsae cosmid G22P10, complete sequence
          Length = 38419

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 6    aaaactggatcaattacc 23
            ||||||||||||||||||
Sbjct: 5646 aaaactggatcaattacc 5663



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>emb|BX649290.6| Zebrafish DNA sequence from clone DKEYP-10B2 in linkage group 17,
             complete sequence
          Length = 128837

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 7     aaactggatcaattacca 24
             ||||||||||||||||||
Sbjct: 69992 aaactggatcaattacca 69975



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>gb|AC157495.2| Gallus gallus BAC clone CH261-13P20 from chromosome unknown, complete
             sequence
          Length = 228855

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 12    ggatcaattaccaagttc 29
             ||||||||||||||||||
Sbjct: 83029 ggatcaattaccaagttc 83046



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>emb|CR848815.7| Zebrafish DNA sequence from clone CH211-197C11 in linkage group 15,
             complete sequence
          Length = 161902

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 2     acacaaaactggatcaat 19
             ||||||||||||||||||
Sbjct: 30634 acacaaaactggatcaat 30651


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 260,685
Number of Sequences: 3902068
Number of extensions: 260685
Number of successful extensions: 56877
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56823
Number of HSP's gapped (non-prelim): 54
length of query: 32
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 12
effective length of database: 17,155,003,908
effective search space: 205860046896
effective search space used: 205860046896
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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