ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart28b08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PATR_THEFY (Q47KH1) Putative phenylalanine aminotransferase (EC ... 30 4.6
2ATPBM_CHLRE (P38482) ATP synthase beta chain, mitochondrial prec... 29 7.8

>PATR_THEFY (Q47KH1) Putative phenylalanine aminotransferase (EC 2.6.1.-)|
          Length = 359

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -1

Query: 178 ERQANPGGLAAMPWVAMELYSTLPGLAGV--LSVPVLPSVYDL 56
           E  A PG      W + E Y  L GLAG   + VP+    +DL
Sbjct: 100 EATAEPGAEVVYAWRSFEAYPLLTGLAGATPIHVPLREETHDL 142



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>ATPBM_CHLRE (P38482) ATP synthase beta chain, mitochondrial precursor (EC|
           3.6.3.14)
          Length = 574

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +3

Query: 213 RRLLLLASPAIVPWWWLNQARCHNLVMLPLRHARPLACSFVWSSWDEAPQ 362
           ++++   SP  VP       R  N++  P+    P+ CS VWS   EAP+
Sbjct: 100 QKVVNTGSPIKVPVGRGTLGRIMNVIGEPVDEQGPIECSEVWSIHREAPE 149


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,770,321
Number of Sequences: 219361
Number of extensions: 1709915
Number of successful extensions: 4149
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4148
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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