ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart28b07 |
|---|---|
| Clone Library Name | barley_pub |
>CI078_MOUSE (Q3TQI7) Protein C9orf78 homolog| Length = 289 Score = 57.0 bits (136), Expect = 3e-08 Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 4/130 (3%) Frame = -3 Query: 532 KKNMEESSTQWTTGIAEVQLPIEYKLRNIEETEAAK-KMLQERRLAGKTKSDANIPSSYS 356 KK E S Q +GI EV L I+ K++NI TE AK ++L E++ K + +P++ + Sbjct: 159 KKTEEMLSNQMLSGIPEVDLGIDAKIKNIISTEDAKARLLAEQQNKKKDSETSFVPTNMA 218 Query: 355 ADFFHRGRDYAEKLR---REHPELYKGQDSQANETGGKPTDSNNPGGPPAAHREAATDEL 185 ++ R Y E+L R + E K + + +T KP +P E ATD+ Sbjct: 219 VNYVQHNRFYHEELNAPIRRNKEEPKARPLRVGDTE-KPEPERSPPNRKRPANEKATDDY 277 Query: 184 LLERFRKREK 155 E+F+K + Sbjct: 278 HYEKFKKMNR 287
>CI078_HUMAN (Q9NZ63) Protein C9orf78 (Hepatocellular carcinoma-associated| antigen 59) Length = 289 Score = 57.0 bits (136), Expect = 3e-08 Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 4/130 (3%) Frame = -3 Query: 532 KKNMEESSTQWTTGIAEVQLPIEYKLRNIEETEAAK-KMLQERRLAGKTKSDANIPSSYS 356 KK E S Q +GI EV L I+ K++NI TE AK ++L E++ K + +P++ + Sbjct: 159 KKTEEMLSNQMLSGIPEVDLGIDAKIKNIISTEDAKARLLAEQQNKKKDSETSFVPTNMA 218 Query: 355 ADFFHRGRDYAEKLR---REHPELYKGQDSQANETGGKPTDSNNPGGPPAAHREAATDEL 185 ++ R Y E+L R + E K + + +T KP +P E ATD+ Sbjct: 219 VNYVQHNRFYHEELNAPIRRNKEEPKARPLRVGDTE-KPEPERSPPNRKRPANEKATDDY 277 Query: 184 LLERFRKREK 155 E+F+K + Sbjct: 278 HYEKFKKMNR 287
>CI078_PONPY (Q5RC87) Protein C9orf78 homolog| Length = 289 Score = 54.7 bits (130), Expect = 2e-07 Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 4/130 (3%) Frame = -3 Query: 532 KKNMEESSTQWTTGIAEVQLPIEYKLRNIEETEAAK-KMLQERRLAGKTKSDANIPSSYS 356 KK E S Q +GI EV I+ K++NI TE AK ++L E++ K + +P++ + Sbjct: 159 KKTEEMLSNQMLSGIPEVDQGIDAKIKNIISTEDAKARLLAEQQNKKKDSETSFVPTNMA 218 Query: 355 ADFFHRGRDYAEKLR---REHPELYKGQDSQANETGGKPTDSNNPGGPPAAHREAATDEL 185 ++ R Y E+L R + E K + + +T KP +P E ATD+ Sbjct: 219 VNYVQHNRFYHEELNAPIRRNKEEPKARPLRVGDTE-KPEPERSPPNRKRPANEKATDDY 277 Query: 184 LLERFRKREK 155 E+F+K + Sbjct: 278 HYEKFKKMNR 287
>INAR2_BOVIN (Q95141) Interferon-alpha/beta receptor beta chain precursor| (IFN-alpha-REC) (Type I interferon receptor) (IFN-R) (Interferon alpha/beta receptor-2) Length = 530 Score = 34.3 bits (77), Expect = 0.23 Identities = 16/58 (27%), Positives = 33/58 (56%) Frame = -1 Query: 360 TVLIFSIVGEIMLKNCEENILSCTKVKIHKLMKLEANQQIVTIQVVHLQRIEKLLPMN 187 TV+I +G I L+N +L+ K+ + +L +++ T++V+H+ R +K+ N Sbjct: 263 TVMILKRIGYICLRNDFPKVLNFYKLSVWVFAELPPLEKVATVEVIHVNRKKKVWNYN 320
>YX07_CAEEL (Q11114) Hypothetical protein C03B1.7| Length = 818 Score = 33.9 bits (76), Expect = 0.30 Identities = 22/85 (25%), Positives = 37/85 (43%) Frame = -3 Query: 487 AEVQLPIEYKLRNIEETEAAKKMLQERRLAGKTKSDANIPSSYSADFFHRGRDYAEKLRR 308 AE Q +E+KL N E+T + ++ L GK K R +D K ++ Sbjct: 277 AEKQATVEFKLENFEQTNGEAQSVENDILTGKEK--------------RRLKDKLRKEKK 322 Query: 307 EHPELYKGQDSQANETGGKPTDSNN 233 E +L+ +D + N+ + S N Sbjct: 323 EQSKLFVEKDLEKNKESSSASLSTN 347
>RFIP2_HUMAN (Q7L804) Rab11 family-interacting protein 2 (Rab11-FIP2) (NRip11)| Length = 512 Score = 32.3 bits (72), Expect = 0.87 Identities = 41/152 (26%), Positives = 60/152 (39%), Gaps = 23/152 (15%) Frame = -3 Query: 535 RKKN-MEESSTQWTTGIAEVQLPIEYKLRNIEETEAAKKMLQERRLAGKTKS-------- 383 RKKN EESS W + + PIE + N + E +K+ R+ GK S Sbjct: 320 RKKNPFEESSETWDSSMNLFSKPIEIRKEN--KREKREKVSLFERVTGKKDSRRSDKLNN 377 Query: 382 -------DANIPSSYS---ADFF--HRGRDYAEKLRREH--PELYKGQDSQANETGGKPT 245 D P+++S D+F + K R + P +NE K Sbjct: 378 GGSDSPCDLKSPNAFSENRQDYFDYESTNPFTAKFRASNIMPSSSFHMSPTSNEDLRKIP 437 Query: 244 DSNNPGGPPAAHREAATDELLLERFRKREKFR 149 DS NP A +R +E+L E + +E R Sbjct: 438 DS-NPFDATAGYRSLTYEEVLQELVKHKELLR 468
>TEGU_EBV (P03186) Large tegument protein| Length = 3149 Score = 31.6 bits (70), Expect = 1.5 Identities = 21/62 (33%), Positives = 29/62 (46%) Frame = -3 Query: 406 RLAGKTKSDANIPSSYSADFFHRGRDYAEKLRREHPELYKGQDSQANETGGKPTDSNNPG 227 R+ K A IP +D G+ E RR +L G D +A E GG+P D++ Sbjct: 867 RVDAGAKMLAEIPQLAESD---DGKFDLEAARRRLTDLLSGGDQEAGEGGGEPEDNSIYR 923 Query: 226 GP 221 GP Sbjct: 924 GP 925
>RECA_LACAC (Q5FL82) Protein recA (Recombinase A)| Length = 363 Score = 31.6 bits (70), Expect = 1.5 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = -3 Query: 364 SYSADFFHRGRDYAEKLRREHPELYKGQDSQANETGG 254 SY +D +GR+ A+K EHP++Y+ Q + G Sbjct: 292 SYKSDRIGQGRENAKKYLEEHPDIYQKVQEQVRQAYG 328
>GIDA_BORGA (Q662I6) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 621 Score = 31.2 bits (69), Expect = 1.9 Identities = 16/45 (35%), Positives = 27/45 (60%) Frame = -3 Query: 463 YKLRNIEETEAAKKMLQERRLAGKTKSDANIPSSYSADFFHRGRD 329 +K R +EE K++L++RRL+ K +D + S DF+H +D Sbjct: 465 FKKRRVEEI---KELLKQRRLSLKDVADEQLKKHVSKDFYHILKD 506
>INAR2_SHEEP (Q95207) Interferon-alpha/beta receptor beta chain precursor| (IFN-alpha-REC) (Type I interferon receptor) (IFN-R) (Interferon alpha/beta receptor-2) Length = 536 Score = 30.8 bits (68), Expect = 2.5 Identities = 15/53 (28%), Positives = 30/53 (56%) Frame = -1 Query: 360 TVLIFSIVGEIMLKNCEENILSCTKVKIHKLMKLEANQQIVTIQVVHLQRIEK 202 TV+I +G I L+N L+ K+ + +L +++ T++V+H+ R +K Sbjct: 263 TVMILKRIGYICLRNDFPEALNFYKLSVWVFPELPPLEKMATVEVIHITRKKK 315
>GBP2_HUMAN (P32456) Interferon-induced guanylate-binding protein 2| (GTP-binding protein 2) (Guanine nucleotide-binding protein 2) (HuGBP-2) Length = 591 Score = 30.8 bits (68), Expect = 2.5 Identities = 20/85 (23%), Positives = 39/85 (45%) Frame = -3 Query: 532 KKNMEESSTQWTTGIAEVQLPIEYKLRNIEETEAAKKMLQERRLAGKTKSDANIPSSYSA 353 K+++ ++ Q ++E + IE + E EAAKKML+E + K + + Sbjct: 466 KEDVADALLQTDQSLSEKEKAIEVERIKAESAEAAKKMLEEIQ-----KKNEEMMEQKEK 520 Query: 352 DFFHRGRDYAEKLRREHPELYKGQD 278 + + EK+ R+ +L Q+ Sbjct: 521 SYQEHVKQLTEKMERDRAQLMAEQE 545
>SYY_STRAW (Q829F2) Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosine--tRNA| ligase) (TyrRS) Length = 422 Score = 30.4 bits (67), Expect = 3.3 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%) Frame = -3 Query: 514 SSTQWTTGIAEVQLPIEYKLRNIEETEAAKKMLQERRLAGKTKSDANIPSSYSADFFHRG 335 ++ WT G++ ++ LR++ + KM+ + ++ + SDA I + + +G Sbjct: 121 NNLDWTQGLSAIEF-----LRDVGKYFRVNKMIAKEAVSRRLNSDAGISYTEFSYQILQG 175 Query: 334 RDYAEKLRREHPELYK-GQDSQANETGG 254 D+ E RR L G D N T G Sbjct: 176 MDFLELYRRYGCTLQTGGSDQWGNLTSG 203
>RL18_PYRAE (Q8ZVV7) 50S ribosomal protein L18P| Length = 205 Score = 30.4 bits (67), Expect = 3.3 Identities = 13/28 (46%), Positives = 20/28 (71%) Frame = -3 Query: 331 DYAEKLRREHPELYKGQDSQANETGGKP 248 +YAEKL+ E+PE YK + S+ + G +P Sbjct: 150 EYAEKLKEENPEAYKARFSRYLQRGLEP 177
>RECA_RHIME (P27865) Protein recA (Recombinase A)| Length = 348 Score = 29.6 bits (65), Expect = 5.6 Identities = 16/58 (27%), Positives = 28/58 (48%) Frame = -3 Query: 364 SYSADFFHRGRDYAEKLRREHPELYKGQDSQANETGGKPTDSNNPGGPPAAHREAATD 191 SY++ +GR+ A+ RE+PEL + ++ + G D G P + + A D Sbjct: 290 SYNSQRLGQGRENAKLFLRENPELLREIETALRQNAGLIADRFLENGGPESDGDEAAD 347
>SH2P1_HUMAN (Q6PD62) SH2 domain-binding protein 1| Length = 1173 Score = 29.6 bits (65), Expect = 5.6 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = -3 Query: 337 GRDYAEKLRREHPELYKGQDSQANETGGKPTDSNNPGGPPAAHREAA 197 G + +K RR HP+ +G D E G KP PP A ++ A Sbjct: 952 GGERKKKKRRRHPKGEEGSDDDETENGPKPKKRR----PPKAEKKKA 994
>VHCA_METVO (Q00404) F420-non-reducing hydrogenase vhc subunit A (EC 1.12.99.-)| Length = 474 Score = 29.3 bits (64), Expect = 7.4 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 5/63 (7%) Frame = +2 Query: 23 HLLSSPS-DDIRKIHLPSTCFLLKGQRHQASSLPGQLL----LSSHDTEFFSLAETLKQQ 187 HL S+ + D++ + +P T +L+ HQAS++ L L+S D F + + LK+ Sbjct: 69 HLASAKAVDNVFGVKIPETANMLRNLIHQASNVHSHALHFGMLASPDLMFPTTDDALKRN 128 Query: 188 FIG 196 +G Sbjct: 129 LLG 131
>PLCB4_HUMAN (Q15147) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase| beta 4 (EC 3.1.4.11) (Phosphoinositide phospholipase C) (Phospholipase C-beta-4) (PLC-beta-4) Length = 1175 Score = 29.3 bits (64), Expect = 7.4 Identities = 18/51 (35%), Positives = 23/51 (45%) Frame = +2 Query: 2 WRTIVYCHLLSSPSDDIRKIHLPSTCFLLKGQRHQASSLPGQLLLSSHDTE 154 W ++ H S+ +IR +HL C LLK A Q L SHD E Sbjct: 1024 WSEMINTH--SAEEQEIRDLHLSQQCELLKKLLINAHEQQTQQLKLSHDRE 1072
>RECA2_MYXXA (P48292) Protein recA 2 (Recombinase A 2)| Length = 358 Score = 29.3 bits (64), Expect = 7.4 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 7/63 (11%) Frame = -3 Query: 364 SYSADFFHRGRDYAEKLRREHPELYKGQDSQANETGG-------KPTDSNNPGGPPAAHR 206 S++ + +GR+ ++ REHPE+ K + + E G P +P P A R Sbjct: 295 SFNGERIGQGRENVKEYLREHPEIAKDIEGRVLEKYGIGKSGAPSPRRRTSPRRPKVAAR 354 Query: 205 EAA 197 AA Sbjct: 355 SAA 357
>SYKC_YEAST (P15180) Lysyl-tRNA synthetase, cytoplasmic (EC 6.1.1.6)| (Lysine--tRNA ligase) (LysRS) Length = 590 Score = 29.3 bits (64), Expect = 7.4 Identities = 19/67 (28%), Positives = 29/67 (43%) Frame = -3 Query: 490 IAEVQLPIEYKLRNIEETEAAKKMLQERRLAGKTKSDANIPSSYSADFFHRGRDYAEKLR 311 +++ +L K R +E +AAKK + + A K K+D S F R R E + Sbjct: 26 VSKSELKKRIKQRQVEAKKAAKKAAAQPKPASKKKTDLFADLDPSQYFETRSRQIQELRK 85 Query: 310 REHPELY 290 P Y Sbjct: 86 THEPNPY 92
>TYDP1_DROME (Q9VQM4) Probable tyrosyl-DNA phosphodiesterase (EC 3.1.4.-)| (Tyr-DNA phosphodiesterase) (Protein glaikit) Length = 580 Score = 28.9 bits (63), Expect = 9.6 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 14/92 (15%) Frame = -3 Query: 397 GKTKSDANIPSSYSADFFHRGRDYAEKLRREHPELYKGQDSQANETGGKPTDS------- 239 G D IP++YS++ H EKL P+ ++ +A+ + KP + Sbjct: 33 GNESGDYEIPANYSSEMIHTQLKLLEKL---FPKQATNKEQEAHSSSSKPAVTAPVASGS 89 Query: 238 -------NNPGGPPAAHREAATDELLLERFRK 164 NP G A+ A+ D L + +K Sbjct: 90 SSSGSLDTNPSGSSASGPAASQDTSNLAKKQK 121
>RECA_STRP8 (Q8NZ30) Protein recA (Recombinase A)| Length = 378 Score = 28.9 bits (63), Expect = 9.6 Identities = 18/63 (28%), Positives = 29/63 (46%) Frame = -3 Query: 364 SYSADFFHRGRDYAEKLRREHPELYKGQDSQANETGGKPTDSNNPGGPPAAHREAATDEL 185 SY+ + +G + A++ EHPEL+ D + G +S A E TD+L Sbjct: 309 SYNGEKIGQGSENAKRYLAEHPELFDEIDRKVRVKFGLLEESEEESAMAVASEE--TDDL 366 Query: 184 LLE 176 L+ Sbjct: 367 ALD 369
>RECA_STRP6 (Q5X9I0) Protein recA (Recombinase A)| Length = 378 Score = 28.9 bits (63), Expect = 9.6 Identities = 18/63 (28%), Positives = 29/63 (46%) Frame = -3 Query: 364 SYSADFFHRGRDYAEKLRREHPELYKGQDSQANETGGKPTDSNNPGGPPAAHREAATDEL 185 SY+ + +G + A++ EHPEL+ D + G +S A E TD+L Sbjct: 309 SYNGEKIGQGSENAKRYLAEHPELFDEIDRKVRVKFGLLEESEEESAMAVASEE--TDDL 366 Query: 184 LLE 176 L+ Sbjct: 367 ALD 369
>Y956_HELPY (O25610) Hypothetical RNA pseudouridine synthase HP0956 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 242 Score = 28.9 bits (63), Expect = 9.6 Identities = 22/58 (37%), Positives = 26/58 (44%) Frame = -1 Query: 303 ILSCTKVKIHKLMKLEANQQIVTIQVVHLQRIEKLLPMNCCLSVSASEKNSVSCEDSN 130 ILS + HK K + +V+I L K LP N SV EK SV ED N Sbjct: 7 ILSVQENISHKKAKALIDSGLVSIGGKKLMVARKELPKNTHFSVQKVEKPSVIFEDEN 64
>OX26_RAT (P83860) Orexigenic neuropeptide QRFP precursor (P518) [Contains:| QRF-amide (Pyroglutamylated arginine-phenylalanine-amide peptide) (Neuropeptide RF-amide)] Length = 124 Score = 28.9 bits (63), Expect = 9.6 Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 1/32 (3%) Frame = -3 Query: 313 RREHPELYKG-QDSQANETGGKPTDSNNPGGP 221 RREH G QDS + TG PTDS GP Sbjct: 69 RREHTGFRLGRQDSGSEATGFLPTDSEKASGP 100 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,291,187 Number of Sequences: 219361 Number of extensions: 1480678 Number of successful extensions: 4903 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 4758 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4902 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4258037034 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
